data_4JS9 # _model_server_result.job_id dwOrxrFKj7gOaKfO0Ost2Q _model_server_result.datetime_utc '2024-11-23 20:29:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4js9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4JS9 # _exptl.entry_id 4JS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JS9 _cell.length_a 215.039 _cell.length_b 215.039 _cell.length_c 115.547 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2 B,F,G,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -19.257833 3 'crystal symmetry operation' 8_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -115.547 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 129 A CYS 194 1_555 C FE MH0 . A MH0 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc2 B SG CYS 129 B CYS 194 1_555 F FE MH0 . B MH0 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 129 n y N1 C8A H4B sing 130 n y C2 N2 H4B sing 131 n n C2 N3 H4B sing 132 n y N2 HN21 H4B sing 133 n n N2 HN22 H4B sing 134 n n N3 C4 H4B sing 135 n y N3 HN3 H4B sing 136 n n C4 O4 H4B doub 137 n n C4 C4A H4B sing 138 n y C4A C8A H4B doub 139 n y C4A N5 H4B sing 140 n n C8A N8 H4B sing 141 n n N5 C6 H4B sing 142 n n N5 HN5 H4B sing 143 n n N8 C7 H4B sing 144 n n N8 HN8 H4B sing 145 n n C6 C7 H4B sing 146 n n C6 C9 H4B sing 147 n n C6 H6 H4B sing 148 n n C7 H71 H4B sing 149 n n C7 H72 H4B sing 150 n n C9 O9 H4B sing 151 n n C9 C10 H4B sing 152 n n C9 H9 H4B sing 153 n n O9 HO9 H4B sing 154 n n C10 C11 H4B sing 155 n n C10 O10 H4B sing 156 n n C10 H10 H4B sing 157 n n C11 H111 H4B sing 158 n n C11 H112 H4B sing 159 n n C11 H113 H4B sing 160 n n O10 HO0 H4B sing 161 n n # _atom_sites.entry_id 4JS9 _atom_sites.fract_transf_matrix[1][1] 0.00465 _atom_sites.fract_transf_matrix[1][2] 0.002685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MH0 A 1 501 900 MH0 MHM . D 3 H4B A 1 502 901 H4B H4B . E 4 SO4 A 1 503 1 SO4 SO4 . F 2 MH0 B 1 900 900 MH0 MHM . G 3 H4B B 1 901 901 H4B H4B . H 5 HOH A 1 601 1 HOH HOH . H 5 HOH A 2 602 3 HOH HOH . H 5 HOH A 3 603 4 HOH HOH . H 5 HOH A 4 604 5 HOH HOH . H 5 HOH A 5 605 8 HOH HOH . H 5 HOH A 6 606 9 HOH HOH . H 5 HOH A 7 607 14 HOH HOH . H 5 HOH A 8 608 17 HOH HOH . H 5 HOH A 9 609 19 HOH HOH . H 5 HOH A 10 610 26 HOH HOH . H 5 HOH A 11 611 27 HOH HOH . H 5 HOH A 12 612 29 HOH HOH . H 5 HOH A 13 613 64 HOH HOH . H 5 HOH A 14 614 65 HOH HOH . H 5 HOH A 15 615 71 HOH HOH . H 5 HOH A 16 616 72 HOH HOH . H 5 HOH A 17 617 74 HOH HOH . H 5 HOH A 18 618 77 HOH HOH . H 5 HOH A 19 619 78 HOH HOH . H 5 HOH A 20 620 79 HOH HOH . H 5 HOH A 21 621 83 HOH HOH . H 5 HOH A 22 622 85 HOH HOH . H 5 HOH A 23 623 89 HOH HOH . H 5 HOH A 24 624 91 HOH HOH . H 5 HOH A 25 625 94 HOH HOH . H 5 HOH A 26 626 97 HOH HOH . H 5 HOH A 27 627 98 HOH HOH . H 5 HOH A 28 628 101 HOH HOH . H 5 HOH A 29 629 108 HOH HOH . H 5 HOH A 30 630 119 HOH HOH . H 5 HOH A 31 631 122 HOH HOH . H 5 HOH A 32 632 123 HOH HOH . H 5 HOH A 33 633 129 HOH HOH . H 5 HOH A 34 634 133 HOH HOH . H 5 HOH A 35 635 137 HOH HOH . H 5 HOH A 36 636 143 HOH HOH . H 5 HOH A 37 637 156 HOH HOH . H 5 HOH A 38 638 167 HOH HOH . H 5 HOH A 39 639 169 HOH HOH . H 5 HOH A 40 640 183 HOH HOH . H 5 HOH A 41 641 185 HOH HOH . H 5 HOH A 42 642 187 HOH HOH . H 5 HOH A 43 643 195 HOH HOH . H 5 HOH A 44 644 196 HOH HOH . H 5 HOH A 45 645 198 HOH HOH . H 5 HOH A 46 646 199 HOH HOH . H 5 HOH A 47 647 200 HOH HOH . H 5 HOH A 48 648 201 HOH HOH . H 5 HOH A 49 649 202 HOH HOH . H 5 HOH A 50 650 203 HOH HOH . H 5 HOH A 51 651 204 HOH HOH . H 5 HOH A 52 652 207 HOH HOH . H 5 HOH A 53 653 208 HOH HOH . H 5 HOH A 54 654 209 HOH HOH . H 5 HOH A 55 655 210 HOH HOH . H 5 HOH A 56 656 211 HOH HOH . H 5 HOH A 57 657 212 HOH HOH . H 5 HOH A 58 658 213 HOH HOH . H 5 HOH A 59 659 214 HOH HOH . H 5 HOH A 60 660 215 HOH HOH . H 5 HOH A 61 661 216 HOH HOH . H 5 HOH A 62 662 217 HOH HOH . H 5 HOH A 63 663 218 HOH HOH . H 5 HOH A 64 664 219 HOH HOH . H 5 HOH A 65 665 220 HOH HOH . H 5 HOH A 66 666 222 HOH HOH . H 5 HOH A 67 667 223 HOH HOH . H 5 HOH A 68 668 224 HOH HOH . H 5 HOH A 69 669 225 HOH HOH . H 5 HOH A 70 670 226 HOH HOH . H 5 HOH A 71 671 227 HOH HOH . H 5 HOH A 72 672 228 HOH HOH . H 5 HOH A 73 673 229 HOH HOH . H 5 HOH A 74 674 234 HOH HOH . H 5 HOH A 75 675 235 HOH HOH . H 5 HOH A 76 676 236 HOH HOH . H 5 HOH A 77 677 237 HOH HOH . H 5 HOH A 78 678 262 HOH HOH . H 5 HOH A 79 679 263 HOH HOH . H 5 HOH A 80 680 265 HOH HOH . H 5 HOH A 81 681 266 HOH HOH . H 5 HOH A 82 682 268 HOH HOH . H 5 HOH A 83 683 269 HOH HOH . H 5 HOH A 84 684 270 HOH HOH . H 5 HOH A 85 685 271 HOH HOH . H 5 HOH A 86 686 272 HOH HOH . H 5 HOH A 87 687 273 HOH HOH . H 5 HOH A 88 688 274 HOH HOH . I 5 HOH B 1 1001 32 HOH HOH . I 5 HOH B 2 1002 33 HOH HOH . I 5 HOH B 3 1003 34 HOH HOH . I 5 HOH B 4 1004 36 HOH HOH . I 5 HOH B 5 1005 39 HOH HOH . I 5 HOH B 6 1006 40 HOH HOH . I 5 HOH B 7 1007 41 HOH HOH . I 5 HOH B 8 1008 42 HOH HOH . I 5 HOH B 9 1009 44 HOH HOH . I 5 HOH B 10 1010 45 HOH HOH . I 5 HOH B 11 1011 46 HOH HOH . I 5 HOH B 12 1012 49 HOH HOH . I 5 HOH B 13 1013 50 HOH HOH . I 5 HOH B 14 1014 51 HOH HOH . I 5 HOH B 15 1015 53 HOH HOH . I 5 HOH B 16 1016 54 HOH HOH . I 5 HOH B 17 1017 55 HOH HOH . I 5 HOH B 18 1018 56 HOH HOH . I 5 HOH B 19 1019 57 HOH HOH . I 5 HOH B 20 1020 58 HOH HOH . I 5 HOH B 21 1021 59 HOH HOH . I 5 HOH B 22 1022 60 HOH HOH . I 5 HOH B 23 1023 66 HOH HOH . I 5 HOH B 24 1024 67 HOH HOH . I 5 HOH B 25 1025 69 HOH HOH . I 5 HOH B 26 1026 70 HOH HOH . I 5 HOH B 27 1027 73 HOH HOH . I 5 HOH B 28 1028 75 HOH HOH . I 5 HOH B 29 1029 76 HOH HOH . I 5 HOH B 30 1030 80 HOH HOH . I 5 HOH B 31 1031 84 HOH HOH . I 5 HOH B 32 1032 86 HOH HOH . I 5 HOH B 33 1033 88 HOH HOH . I 5 HOH B 34 1034 96 HOH HOH . I 5 HOH B 35 1035 105 HOH HOH . I 5 HOH B 36 1036 107 HOH HOH . I 5 HOH B 37 1037 120 HOH HOH . I 5 HOH B 38 1038 125 HOH HOH . I 5 HOH B 39 1039 126 HOH HOH . I 5 HOH B 40 1040 127 HOH HOH . I 5 HOH B 41 1041 132 HOH HOH . I 5 HOH B 42 1042 139 HOH HOH . I 5 HOH B 43 1043 140 HOH HOH . I 5 HOH B 44 1044 154 HOH HOH . I 5 HOH B 45 1045 155 HOH HOH . I 5 HOH B 46 1046 165 HOH HOH . I 5 HOH B 47 1047 168 HOH HOH . I 5 HOH B 48 1048 171 HOH HOH . I 5 HOH B 49 1049 172 HOH HOH . I 5 HOH B 50 1050 174 HOH HOH . I 5 HOH B 51 1051 178 HOH HOH . I 5 HOH B 52 1052 230 HOH HOH . I 5 HOH B 53 1053 231 HOH HOH . I 5 HOH B 54 1054 232 HOH HOH . I 5 HOH B 55 1055 238 HOH HOH . I 5 HOH B 56 1056 239 HOH HOH . I 5 HOH B 57 1057 240 HOH HOH . I 5 HOH B 58 1058 241 HOH HOH . I 5 HOH B 59 1059 242 HOH HOH . I 5 HOH B 60 1060 243 HOH HOH . I 5 HOH B 61 1061 244 HOH HOH . I 5 HOH B 62 1062 245 HOH HOH . I 5 HOH B 63 1063 246 HOH HOH . I 5 HOH B 64 1064 247 HOH HOH . I 5 HOH B 65 1065 248 HOH HOH . I 5 HOH B 66 1066 250 HOH HOH . I 5 HOH B 67 1067 251 HOH HOH . I 5 HOH B 68 1068 253 HOH HOH . I 5 HOH B 69 1069 255 HOH HOH . I 5 HOH B 70 1070 259 HOH HOH . I 5 HOH B 71 1071 260 HOH HOH . I 5 HOH B 72 1072 275 HOH HOH . I 5 HOH B 73 1073 276 HOH HOH . I 5 HOH B 74 1074 277 HOH HOH . I 5 HOH B 75 1075 278 HOH HOH . I 5 HOH B 76 1076 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 -67.229 30.717 -6.095 1 26.96 ? N1 H4B 502 A 1 HETATM 2 C C2 H4B . . . D 3 -67.437 29.44 -5.842 1 27.95 ? C2 H4B 502 A 1 HETATM 3 N N2 H4B . . . D 3 -67.432 28.546 -6.876 1 28.97 ? N2 H4B 502 A 1 HETATM 4 N N3 H4B . . . D 3 -67.666 28.976 -4.581 1 27.72 ? N3 H4B 502 A 1 HETATM 5 C C4 H4B . . . D 3 -67.679 29.841 -3.534 1 28.86 ? C4 H4B 502 A 1 HETATM 6 O O4 H4B . . . D 3 -67.876 29.487 -2.376 1 32.37 ? O4 H4B 502 A 1 HETATM 7 C C4A H4B . . . D 3 -67.442 31.186 -3.785 1 28.26 ? C4A H4B 502 A 1 HETATM 8 C C8A H4B . . . D 3 -67.222 31.617 -5.09 1 29.43 ? C8A H4B 502 A 1 HETATM 9 N N5 H4B . . . D 3 -67.433 32.08 -2.698 1 29.15 ? N5 H4B 502 A 1 HETATM 10 N N8 H4B . . . D 3 -66.987 32.971 -5.331 1 27.35 ? N8 H4B 502 A 1 HETATM 11 C C6 H4B . . . D 3 -67.593 33.519 -3.001 1 29.37 ? C6 H4B 502 A 1 HETATM 12 C C7 H4B . . . D 3 -66.695 33.882 -4.199 1 28.58 ? C7 H4B 502 A 1 HETATM 13 C C9 H4B . . . D 3 -67.347 34.373 -1.748 1 28.63 ? C9 H4B 502 A 1 HETATM 14 O O9 H4B . . . D 3 -66.057 34.178 -1.198 1 38.31 ? O9 H4B 502 A 1 HETATM 15 C C10 H4B . . . D 3 -67.46 35.832 -2.118 1 31.37 ? C10 H4B 502 A 1 HETATM 16 C C11 H4B . . . D 3 -67.44 36.659 -0.829 1 31.7 ? C11 H4B 502 A 1 HETATM 17 O O10 H4B . . . D 3 -68.688 35.951 -2.834 1 33.23 ? O10 H4B 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #