data_4JSK
#
_model_server_result.job_id            YCJkud5xOikD14cy-681vw 
_model_server_result.datetime_utc      '2024-11-06 01:46:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4JSK 
#
_exptl.entry_id    4JSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JSK 
_cell.length_a            58.432 
_cell.length_b            106.572 
_cell.length_c            156.972 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc4 I ZN ZN . A ZN 507 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc5 I ZN ZN . A ZN 507 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 169 n y 
N1 C8A H4B sing 170 n y 
C2 N2 H4B sing 171 n n 
C2 N3 H4B sing 172 n y 
N2 HN21 H4B sing 173 n n 
N2 HN22 H4B sing 174 n n 
N3 C4 H4B sing 175 n y 
N3 HN3 H4B sing 176 n n 
C4 O4 H4B doub 177 n n 
C4 C4A H4B sing 178 n y 
C4A C8A H4B doub 179 n y 
C4A N5 H4B sing 180 n n 
C8A N8 H4B sing 181 n n 
N5 C6 H4B sing 182 n n 
N5 HN5 H4B sing 183 n n 
N8 C7 H4B sing 184 n n 
N8 HN8 H4B sing 185 n n 
C6 C7 H4B sing 186 n n 
C6 C9 H4B sing 187 n n 
C6 H6 H4B sing 188 n n 
C7 H71 H4B sing 189 n n 
C7 H72 H4B sing 190 n n 
C9 O9 H4B sing 191 n n 
C9 C10 H4B sing 192 n n 
C9 H9 H4B sing 193 n n 
O9 HO9 H4B sing 194 n n 
C10 C11 H4B sing 195 n n 
C10 O10 H4B sing 196 n n 
C10 H10 H4B sing 197 n n 
C11 H111 H4B sing 198 n n 
C11 H112 H4B sing 199 n n 
C11 H113 H4B sing 200 n n 
O10 HO0 H4B sing 201 n n 
#
_atom_sites.entry_id                     4JSK 
_atom_sites.fract_transf_matrix[1][1]    0.017114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009383 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 500 HEM HEM . 
D 3 H4B A 1 502 600 H4B BH4 . 
E 4 QJ2 A 1 503 800 QJ2 QJ2 . 
F 5 ACT A 1 504 860 ACT ACT . 
G 5 ACT A 1 505 861 ACT ACT . 
H 6 GOL A 1 506 880 GOL GOL . 
I 7 ZN A 1 507 900 ZN ZN . 
J 2 HEM B 1 501 500 HEM HEM . 
K 3 H4B B 1 502 600 H4B BH4 . 
L 4 QJ2 B 1 503 800 QJ2 QJ2 . 
M 5 ACT B 1 504 860 ACT ACT . 
N 5 ACT B 1 505 861 ACT ACT . 
O 6 GOL B 1 506 880 GOL GOL . 
P 8 HOH A 1 601 2 HOH HOH . 
P 8 HOH A 2 602 4 HOH HOH . 
P 8 HOH A 3 603 5 HOH HOH . 
P 8 HOH A 4 604 7 HOH HOH . 
P 8 HOH A 5 605 9 HOH HOH . 
P 8 HOH A 6 606 10 HOH HOH . 
P 8 HOH A 7 607 12 HOH HOH . 
P 8 HOH A 8 608 15 HOH HOH . 
P 8 HOH A 9 609 17 HOH HOH . 
P 8 HOH A 10 610 18 HOH HOH . 
P 8 HOH A 11 611 19 HOH HOH . 
P 8 HOH A 12 612 20 HOH HOH . 
P 8 HOH A 13 613 24 HOH HOH . 
P 8 HOH A 14 614 25 HOH HOH . 
P 8 HOH A 15 615 26 HOH HOH . 
P 8 HOH A 16 616 29 HOH HOH . 
P 8 HOH A 17 617 30 HOH HOH . 
P 8 HOH A 18 618 31 HOH HOH . 
P 8 HOH A 19 619 33 HOH HOH . 
P 8 HOH A 20 620 34 HOH HOH . 
P 8 HOH A 21 621 38 HOH HOH . 
P 8 HOH A 22 622 41 HOH HOH . 
P 8 HOH A 23 623 42 HOH HOH . 
P 8 HOH A 24 624 43 HOH HOH . 
P 8 HOH A 25 625 44 HOH HOH . 
P 8 HOH A 26 626 45 HOH HOH . 
P 8 HOH A 27 627 46 HOH HOH . 
P 8 HOH A 28 628 47 HOH HOH . 
P 8 HOH A 29 629 48 HOH HOH . 
P 8 HOH A 30 630 49 HOH HOH . 
P 8 HOH A 31 631 52 HOH HOH . 
P 8 HOH A 32 632 53 HOH HOH . 
P 8 HOH A 33 633 54 HOH HOH . 
P 8 HOH A 34 634 56 HOH HOH . 
P 8 HOH A 35 635 57 HOH HOH . 
P 8 HOH A 36 636 58 HOH HOH . 
P 8 HOH A 37 637 60 HOH HOH . 
P 8 HOH A 38 638 63 HOH HOH . 
P 8 HOH A 39 639 64 HOH HOH . 
P 8 HOH A 40 640 65 HOH HOH . 
P 8 HOH A 41 641 71 HOH HOH . 
P 8 HOH A 42 642 73 HOH HOH . 
P 8 HOH A 43 643 74 HOH HOH . 
P 8 HOH A 44 644 78 HOH HOH . 
P 8 HOH A 45 645 80 HOH HOH . 
P 8 HOH A 46 646 81 HOH HOH . 
P 8 HOH A 47 647 85 HOH HOH . 
P 8 HOH A 48 648 88 HOH HOH . 
P 8 HOH A 49 649 95 HOH HOH . 
P 8 HOH A 50 650 96 HOH HOH . 
P 8 HOH A 51 651 97 HOH HOH . 
P 8 HOH A 52 652 98 HOH HOH . 
P 8 HOH A 53 653 99 HOH HOH . 
P 8 HOH A 54 654 100 HOH HOH . 
P 8 HOH A 55 655 102 HOH HOH . 
P 8 HOH A 56 656 105 HOH HOH . 
P 8 HOH A 57 657 107 HOH HOH . 
P 8 HOH A 58 658 108 HOH HOH . 
P 8 HOH A 59 659 109 HOH HOH . 
P 8 HOH A 60 660 116 HOH HOH . 
P 8 HOH A 61 661 117 HOH HOH . 
P 8 HOH A 62 662 118 HOH HOH . 
P 8 HOH A 63 663 120 HOH HOH . 
P 8 HOH A 64 664 122 HOH HOH . 
P 8 HOH A 65 665 136 HOH HOH . 
Q 8 HOH B 1 601 1 HOH HOH . 
Q 8 HOH B 2 602 3 HOH HOH . 
Q 8 HOH B 3 603 6 HOH HOH . 
Q 8 HOH B 4 604 8 HOH HOH . 
Q 8 HOH B 5 605 11 HOH HOH . 
Q 8 HOH B 6 606 13 HOH HOH . 
Q 8 HOH B 7 607 14 HOH HOH . 
Q 8 HOH B 8 608 16 HOH HOH . 
Q 8 HOH B 9 609 21 HOH HOH . 
Q 8 HOH B 10 610 22 HOH HOH . 
Q 8 HOH B 11 611 23 HOH HOH . 
Q 8 HOH B 12 612 27 HOH HOH . 
Q 8 HOH B 13 613 28 HOH HOH . 
Q 8 HOH B 14 614 32 HOH HOH . 
Q 8 HOH B 15 615 35 HOH HOH . 
Q 8 HOH B 16 616 36 HOH HOH . 
Q 8 HOH B 17 617 37 HOH HOH . 
Q 8 HOH B 18 618 39 HOH HOH . 
Q 8 HOH B 19 619 40 HOH HOH . 
Q 8 HOH B 20 620 50 HOH HOH . 
Q 8 HOH B 21 621 51 HOH HOH . 
Q 8 HOH B 22 622 55 HOH HOH . 
Q 8 HOH B 23 623 59 HOH HOH . 
Q 8 HOH B 24 624 61 HOH HOH . 
Q 8 HOH B 25 625 62 HOH HOH . 
Q 8 HOH B 26 626 66 HOH HOH . 
Q 8 HOH B 27 627 67 HOH HOH . 
Q 8 HOH B 28 628 68 HOH HOH . 
Q 8 HOH B 29 629 69 HOH HOH . 
Q 8 HOH B 30 630 70 HOH HOH . 
Q 8 HOH B 31 631 72 HOH HOH . 
Q 8 HOH B 32 632 75 HOH HOH . 
Q 8 HOH B 33 633 76 HOH HOH . 
Q 8 HOH B 34 634 77 HOH HOH . 
Q 8 HOH B 35 635 79 HOH HOH . 
Q 8 HOH B 36 636 82 HOH HOH . 
Q 8 HOH B 37 637 83 HOH HOH . 
Q 8 HOH B 38 638 84 HOH HOH . 
Q 8 HOH B 39 639 86 HOH HOH . 
Q 8 HOH B 40 640 87 HOH HOH . 
Q 8 HOH B 41 641 89 HOH HOH . 
Q 8 HOH B 42 642 90 HOH HOH . 
Q 8 HOH B 43 643 91 HOH HOH . 
Q 8 HOH B 44 644 92 HOH HOH . 
Q 8 HOH B 45 645 93 HOH HOH . 
Q 8 HOH B 46 646 94 HOH HOH . 
Q 8 HOH B 47 647 101 HOH HOH . 
Q 8 HOH B 48 648 103 HOH HOH . 
Q 8 HOH B 49 649 104 HOH HOH . 
Q 8 HOH B 50 650 106 HOH HOH . 
Q 8 HOH B 51 651 110 HOH HOH . 
Q 8 HOH B 52 652 111 HOH HOH . 
Q 8 HOH B 53 653 112 HOH HOH . 
Q 8 HOH B 54 654 113 HOH HOH . 
Q 8 HOH B 55 655 114 HOH HOH . 
Q 8 HOH B 56 656 115 HOH HOH . 
Q 8 HOH B 57 657 119 HOH HOH . 
Q 8 HOH B 58 658 121 HOH HOH . 
Q 8 HOH B 59 659 123 HOH HOH . 
Q 8 HOH B 60 660 124 HOH HOH . 
Q 8 HOH B 61 661 125 HOH HOH . 
Q 8 HOH B 62 662 126 HOH HOH . 
Q 8 HOH B 63 663 127 HOH HOH . 
Q 8 HOH B 64 664 128 HOH HOH . 
Q 8 HOH B 65 665 129 HOH HOH . 
Q 8 HOH B 66 666 130 HOH HOH . 
Q 8 HOH B 67 667 131 HOH HOH . 
Q 8 HOH B 68 668 132 HOH HOH . 
Q 8 HOH B 69 669 133 HOH HOH . 
Q 8 HOH B 70 670 134 HOH HOH . 
Q 8 HOH B 71 671 135 HOH HOH . 
Q 8 HOH B 72 672 137 HOH HOH . 
Q 8 HOH B 73 673 138 HOH HOH . 
Q 8 HOH B 74 674 139 HOH HOH . 
Q 8 HOH B 75 675 140 HOH HOH . 
Q 8 HOH B 76 676 141 HOH HOH . 
Q 8 HOH B 77 677 142 HOH HOH . 
Q 8 HOH B 78 678 143 HOH HOH . 
Q 8 HOH B 79 679 144 HOH HOH . 
Q 8 HOH B 80 680 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . D 3 8.284 11.725 42.909 1 47.09 ? N1 H4B 502 A 1 
HETATM 2 C C2 H4B . . . D 3 8.174 12.095 41.639 1 46.64 ? C2 H4B 502 A 1 
HETATM 3 N N2 H4B . . . D 3 7.352 11.447 40.806 1 46.75 ? N2 H4B 502 A 1 
HETATM 4 N N3 H4B . . . D 3 8.924 13.103 41.195 1 50.65 ? N3 H4B 502 A 1 
HETATM 5 C C4 H4B . . . D 3 9.772 13.78 41.998 1 47 ? C4 H4B 502 A 1 
HETATM 6 O O4 H4B . . . D 3 10.402 14.711 41.48 1 47.69 ? O4 H4B 502 A 1 
HETATM 7 C C4A H4B . . . D 3 9.878 13.429 43.321 1 46.02 ? C4A H4B 502 A 1 
HETATM 8 C C8A H4B . . . D 3 9.114 12.358 43.752 1 44.63 ? C8A H4B 502 A 1 
HETATM 9 N N5 H4B . . . D 3 10.721 14.01 44.195 1 47.38 ? N5 H4B 502 A 1 
HETATM 10 N N8 H4B . . . D 3 9.162 11.93 45.023 1 43.21 ? N8 H4B 502 A 1 
HETATM 11 C C6 H4B . . . D 3 11.238 13.165 45.269 1 47.02 ? C6 H4B 502 A 1 
HETATM 12 C C7 H4B . . . D 3 10.05 12.565 46.007 1 49 ? C7 H4B 502 A 1 
HETATM 13 C C9 H4B . . . D 3 12.054 13.969 46.272 1 50.85 ? C9 H4B 502 A 1 
HETATM 14 O O9 H4B . . . D 3 11.324 15.167 46.591 1 53.96 ? O9 H4B 502 A 1 
HETATM 15 C C10 H4B . . . D 3 12.351 13.175 47.565 1 50.23 ? C10 H4B 502 A 1 
HETATM 16 C C11 H4B . . . D 3 13.238 13.971 48.517 1 44.08 ? C11 H4B 502 A 1 
HETATM 17 O O10 H4B . . . D 3 12.994 11.925 47.274 1 50.59 ? O10 H4B 502 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#