data_4JSS
#
_model_server_result.job_id            dhgyyJYrm3-F4vzQoDaw8w 
_model_server_result.datetime_utc      '2024-11-26 17:11:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jss 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4JSS 
#
_exptl.entry_id    4JSS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.172 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-hydroxy-2-sulfanylpyridinium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.43 
_cell.angle_gamma         90 
_cell.entry_id            4JSS 
_cell.length_a            41.855 
_cell.length_b            41.576 
_cell.length_c            72.369 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JSS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 94 A ASP 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc4 A O GLN 136 A GLN 137 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc5 A O GLU 204 A GLU 205 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? 
metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 C HG MBO . A MBO 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D O8 BEW . A BEW 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc8 B ZN ZN . A ZN 301 1_555 D S7 BEW . A BEW 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C5 H6 N O S 1' 
_chem_comp.formula_weight    128.172 
_chem_comp.id                BEW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-hydroxy-2-sulfanylpyridinium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 BEW doub 70 n y 
C4 C3 BEW sing 71 n y 
C5 C6 BEW sing 72 n y 
C6 C1 BEW doub 73 n y 
N2 O8 BEW sing 74 n n 
N2 C3 BEW doub 75 n y 
N2 C1 BEW sing 76 n y 
C1 S7 BEW sing 77 n n 
C4 H4 BEW sing 78 n n 
C5 H5 BEW sing 79 n n 
C6 H6 BEW sing 80 n n 
O8 HO8 BEW sing 81 n n 
C3 H3 BEW sing 82 n n 
S7 HS7 BEW sing 83 n n 
#
_atom_sites.entry_id                     4JSS 
_atom_sites.fract_transf_matrix[1][1]    0.023892 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00615 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024052 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014268 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 MBO A 1 302 263 MBO MBO . 
D 4 BEW A 1 303 264 BEW BEW . 
E 5 SO4 A 1 304 476 SO4 SO4 . 
F 6 HOH A 1 401 265 HOH HOH . 
F 6 HOH A 2 402 266 HOH HOH . 
F 6 HOH A 3 403 267 HOH HOH . 
F 6 HOH A 4 404 268 HOH HOH . 
F 6 HOH A 5 405 269 HOH HOH . 
F 6 HOH A 6 406 270 HOH HOH . 
F 6 HOH A 7 407 271 HOH HOH . 
F 6 HOH A 8 408 272 HOH HOH . 
F 6 HOH A 9 409 273 HOH HOH . 
F 6 HOH A 10 410 274 HOH HOH . 
F 6 HOH A 11 411 275 HOH HOH . 
F 6 HOH A 12 412 276 HOH HOH . 
F 6 HOH A 13 413 277 HOH HOH . 
F 6 HOH A 14 414 278 HOH HOH . 
F 6 HOH A 15 415 279 HOH HOH . 
F 6 HOH A 16 416 280 HOH HOH . 
F 6 HOH A 17 417 281 HOH HOH . 
F 6 HOH A 18 418 282 HOH HOH . 
F 6 HOH A 19 419 283 HOH HOH . 
F 6 HOH A 20 420 284 HOH HOH . 
F 6 HOH A 21 421 285 HOH HOH . 
F 6 HOH A 22 422 286 HOH HOH . 
F 6 HOH A 23 423 287 HOH HOH . 
F 6 HOH A 24 424 288 HOH HOH . 
F 6 HOH A 25 425 289 HOH HOH . 
F 6 HOH A 26 426 290 HOH HOH . 
F 6 HOH A 27 427 291 HOH HOH . 
F 6 HOH A 28 428 292 HOH HOH . 
F 6 HOH A 29 429 293 HOH HOH . 
F 6 HOH A 30 430 294 HOH HOH . 
F 6 HOH A 31 431 295 HOH HOH . 
F 6 HOH A 32 432 296 HOH HOH . 
F 6 HOH A 33 433 297 HOH HOH . 
F 6 HOH A 34 434 298 HOH HOH . 
F 6 HOH A 35 435 299 HOH HOH . 
F 6 HOH A 36 436 300 HOH HOH . 
F 6 HOH A 37 437 301 HOH HOH . 
F 6 HOH A 38 438 302 HOH HOH . 
F 6 HOH A 39 439 303 HOH HOH . 
F 6 HOH A 40 440 304 HOH HOH . 
F 6 HOH A 41 441 305 HOH HOH . 
F 6 HOH A 42 442 306 HOH HOH . 
F 6 HOH A 43 443 307 HOH HOH . 
F 6 HOH A 44 444 308 HOH HOH . 
F 6 HOH A 45 445 309 HOH HOH . 
F 6 HOH A 46 446 310 HOH HOH . 
F 6 HOH A 47 447 311 HOH HOH . 
F 6 HOH A 48 448 312 HOH HOH . 
F 6 HOH A 49 449 313 HOH HOH . 
F 6 HOH A 50 450 314 HOH HOH . 
F 6 HOH A 51 451 315 HOH HOH . 
F 6 HOH A 52 452 316 HOH HOH . 
F 6 HOH A 53 453 317 HOH HOH . 
F 6 HOH A 54 454 318 HOH HOH . 
F 6 HOH A 55 455 319 HOH HOH . 
F 6 HOH A 56 456 320 HOH HOH . 
F 6 HOH A 57 457 321 HOH HOH . 
F 6 HOH A 58 458 322 HOH HOH . 
F 6 HOH A 59 459 323 HOH HOH . 
F 6 HOH A 60 460 324 HOH HOH . 
F 6 HOH A 61 461 325 HOH HOH . 
F 6 HOH A 62 462 326 HOH HOH . 
F 6 HOH A 63 463 327 HOH HOH . 
F 6 HOH A 64 464 328 HOH HOH . 
F 6 HOH A 65 465 329 HOH HOH . 
F 6 HOH A 66 466 330 HOH HOH . 
F 6 HOH A 67 467 331 HOH HOH . 
F 6 HOH A 68 468 332 HOH HOH . 
F 6 HOH A 69 469 333 HOH HOH . 
F 6 HOH A 70 470 334 HOH HOH . 
F 6 HOH A 71 471 335 HOH HOH . 
F 6 HOH A 72 472 336 HOH HOH . 
F 6 HOH A 73 473 337 HOH HOH . 
F 6 HOH A 74 474 338 HOH HOH . 
F 6 HOH A 75 475 339 HOH HOH . 
F 6 HOH A 76 476 340 HOH HOH . 
F 6 HOH A 77 477 341 HOH HOH . 
F 6 HOH A 78 478 342 HOH HOH . 
F 6 HOH A 79 479 343 HOH HOH . 
F 6 HOH A 80 480 344 HOH HOH . 
F 6 HOH A 81 481 345 HOH HOH . 
F 6 HOH A 82 482 346 HOH HOH . 
F 6 HOH A 83 483 347 HOH HOH . 
F 6 HOH A 84 484 348 HOH HOH . 
F 6 HOH A 85 485 349 HOH HOH . 
F 6 HOH A 86 486 350 HOH HOH . 
F 6 HOH A 87 487 351 HOH HOH . 
F 6 HOH A 88 488 352 HOH HOH . 
F 6 HOH A 89 489 353 HOH HOH . 
F 6 HOH A 90 490 354 HOH HOH . 
F 6 HOH A 91 491 355 HOH HOH . 
F 6 HOH A 92 492 356 HOH HOH . 
F 6 HOH A 93 493 357 HOH HOH . 
F 6 HOH A 94 494 358 HOH HOH . 
F 6 HOH A 95 495 359 HOH HOH . 
F 6 HOH A 96 496 360 HOH HOH . 
F 6 HOH A 97 497 361 HOH HOH . 
F 6 HOH A 98 498 362 HOH HOH . 
F 6 HOH A 99 499 363 HOH HOH . 
F 6 HOH A 100 500 364 HOH HOH . 
F 6 HOH A 101 501 365 HOH HOH . 
F 6 HOH A 102 502 366 HOH HOH . 
F 6 HOH A 103 503 367 HOH HOH . 
F 6 HOH A 104 504 368 HOH HOH . 
F 6 HOH A 105 505 369 HOH HOH . 
F 6 HOH A 106 506 370 HOH HOH . 
F 6 HOH A 107 507 371 HOH HOH . 
F 6 HOH A 108 508 372 HOH HOH . 
F 6 HOH A 109 509 373 HOH HOH . 
F 6 HOH A 110 510 374 HOH HOH . 
F 6 HOH A 111 511 375 HOH HOH . 
F 6 HOH A 112 512 376 HOH HOH . 
F 6 HOH A 113 513 377 HOH HOH . 
F 6 HOH A 114 514 378 HOH HOH . 
F 6 HOH A 115 515 379 HOH HOH . 
F 6 HOH A 116 516 380 HOH HOH . 
F 6 HOH A 117 517 381 HOH HOH . 
F 6 HOH A 118 518 382 HOH HOH . 
F 6 HOH A 119 519 383 HOH HOH . 
F 6 HOH A 120 520 384 HOH HOH . 
F 6 HOH A 121 521 385 HOH HOH . 
F 6 HOH A 122 522 386 HOH HOH . 
F 6 HOH A 123 523 387 HOH HOH . 
F 6 HOH A 124 524 388 HOH HOH . 
F 6 HOH A 125 525 389 HOH HOH . 
F 6 HOH A 126 526 390 HOH HOH . 
F 6 HOH A 127 527 391 HOH HOH . 
F 6 HOH A 128 528 392 HOH HOH . 
F 6 HOH A 129 529 393 HOH HOH . 
F 6 HOH A 130 530 394 HOH HOH . 
F 6 HOH A 131 531 395 HOH HOH . 
F 6 HOH A 132 532 396 HOH HOH . 
F 6 HOH A 133 533 397 HOH HOH . 
F 6 HOH A 134 534 398 HOH HOH . 
F 6 HOH A 135 535 399 HOH HOH . 
F 6 HOH A 136 536 400 HOH HOH . 
F 6 HOH A 137 537 401 HOH HOH . 
F 6 HOH A 138 538 402 HOH HOH . 
F 6 HOH A 139 539 403 HOH HOH . 
F 6 HOH A 140 540 404 HOH HOH . 
F 6 HOH A 141 541 405 HOH HOH . 
F 6 HOH A 142 542 406 HOH HOH . 
F 6 HOH A 143 543 407 HOH HOH . 
F 6 HOH A 144 544 408 HOH HOH . 
F 6 HOH A 145 545 409 HOH HOH . 
F 6 HOH A 146 546 410 HOH HOH . 
F 6 HOH A 147 547 411 HOH HOH . 
F 6 HOH A 148 548 412 HOH HOH . 
F 6 HOH A 149 549 413 HOH HOH . 
F 6 HOH A 150 550 414 HOH HOH . 
F 6 HOH A 151 551 415 HOH HOH . 
F 6 HOH A 152 552 416 HOH HOH . 
F 6 HOH A 153 553 417 HOH HOH . 
F 6 HOH A 154 554 418 HOH HOH . 
F 6 HOH A 155 555 419 HOH HOH . 
F 6 HOH A 156 556 420 HOH HOH . 
F 6 HOH A 157 557 421 HOH HOH . 
F 6 HOH A 158 558 422 HOH HOH . 
F 6 HOH A 159 559 423 HOH HOH . 
F 6 HOH A 160 560 424 HOH HOH . 
F 6 HOH A 161 561 425 HOH HOH . 
F 6 HOH A 162 562 426 HOH HOH . 
F 6 HOH A 163 563 427 HOH HOH . 
F 6 HOH A 164 564 428 HOH HOH . 
F 6 HOH A 165 565 429 HOH HOH . 
F 6 HOH A 166 566 430 HOH HOH . 
F 6 HOH A 167 567 431 HOH HOH . 
F 6 HOH A 168 568 432 HOH HOH . 
F 6 HOH A 169 569 433 HOH HOH . 
F 6 HOH A 170 570 434 HOH HOH . 
F 6 HOH A 171 571 435 HOH HOH . 
F 6 HOH A 172 572 436 HOH HOH . 
F 6 HOH A 173 573 437 HOH HOH . 
F 6 HOH A 174 574 438 HOH HOH . 
F 6 HOH A 175 575 439 HOH HOH . 
F 6 HOH A 176 576 440 HOH HOH . 
F 6 HOH A 177 577 441 HOH HOH . 
F 6 HOH A 178 578 442 HOH HOH . 
F 6 HOH A 179 579 443 HOH HOH . 
F 6 HOH A 180 580 444 HOH HOH . 
F 6 HOH A 181 581 445 HOH HOH . 
F 6 HOH A 182 582 446 HOH HOH . 
F 6 HOH A 183 583 447 HOH HOH . 
F 6 HOH A 184 584 448 HOH HOH . 
F 6 HOH A 185 585 449 HOH HOH . 
F 6 HOH A 186 586 450 HOH HOH . 
F 6 HOH A 187 587 451 HOH HOH . 
F 6 HOH A 188 588 452 HOH HOH . 
F 6 HOH A 189 589 453 HOH HOH . 
F 6 HOH A 190 590 454 HOH HOH . 
F 6 HOH A 191 591 455 HOH HOH . 
F 6 HOH A 192 592 456 HOH HOH . 
F 6 HOH A 193 593 457 HOH HOH . 
F 6 HOH A 194 594 458 HOH HOH . 
F 6 HOH A 195 595 459 HOH HOH . 
F 6 HOH A 196 596 460 HOH HOH . 
F 6 HOH A 197 597 461 HOH HOH . 
F 6 HOH A 198 598 462 HOH HOH . 
F 6 HOH A 199 599 463 HOH HOH . 
F 6 HOH A 200 600 464 HOH HOH . 
F 6 HOH A 201 601 465 HOH HOH . 
F 6 HOH A 202 602 466 HOH HOH . 
F 6 HOH A 203 603 467 HOH HOH . 
F 6 HOH A 204 604 468 HOH HOH . 
F 6 HOH A 205 605 469 HOH HOH . 
F 6 HOH A 206 606 470 HOH HOH . 
F 6 HOH A 207 607 471 HOH HOH . 
F 6 HOH A 208 608 472 HOH HOH . 
F 6 HOH A 209 609 473 HOH HOH . 
F 6 HOH A 210 610 474 HOH HOH . 
F 6 HOH A 211 611 475 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 BEW . . . D 4 16.087 3.063 12.978 1 35.14 ? C4 BEW 303 A 1 
HETATM 2 C C5 BEW . . . D 4 15.533 3.701 14.108 1 32.75 ? C5 BEW 303 A 1 
HETATM 3 C C6 BEW . . . D 4 14.773 2.954 15.022 1 31.73 ? C6 BEW 303 A 1 
HETATM 4 N N2 BEW . . . D 4 15.49 0.902 13.934 1 34.32 ? N2 BEW 303 A 1 
HETATM 5 O O8 BEW . . . D 4 15.595 -0.481 13.941 1 24.15 ? O8 BEW 303 A 1 
HETATM 6 C C3 BEW . . . D 4 16.099 1.667 12.905 1 33.96 ? C3 BEW 303 A 1 
HETATM 7 C C1 BEW . . . D 4 14.762 1.534 14.93 1 32.17 ? C1 BEW 303 A 1 
HETATM 8 S S7 BEW . . . D 4 13.804 0.603 15.988 1 27.39 ? S7 BEW 303 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#