data_4JSY
#
_model_server_result.job_id            oJswoc47f7h3mKmB0qRYXw 
_model_server_result.datetime_utc      '2024-11-30 07:54:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jsy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    4JSY 
#
_exptl.entry_id    4JSY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JSY 
_cell.length_a            45.306 
_cell.length_b            66.781 
_cell.length_c            119.546 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JSY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 1 A SER 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C LEU 44 A LEU 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 45 A MSE 44 1_555 A N SER 46 A SER 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C GLN 137 A GLN 136 1_555 A N MSE 138 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 138 A MSE 137 1_555 A N LYS 139 A LYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 B C SER 1 B SER 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C MSE 2 B MSE 1 1_555 B N LYS 3 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B C LEU 44 B LEU 43 1_555 B N MSE 45 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B C MSE 45 B MSE 44 1_555 B N SER 46 B SER 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 B C GLN 137 B GLN 136 1_555 B N MSE 138 B MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 B C MSE 138 B MSE 137 1_555 B N LYS 139 B LYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OG SER 23 A SER 22 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc2 C O1G GTP . A GTP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc3 C O1B GTP . A GTP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc5 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc6 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc7 B OG SER 23 B SER 22 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc8 E O2G GTP . B GTP 1001 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc9 E O2B GTP . B GTP 1001 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc10 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc11 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc12 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JSY 
_atom_sites.fract_transf_matrix[1][1]    0.022072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014974 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GTP A 1 1001 1001 GTP GTP . 
D 3 MG A 1 1002 1002 MG MG . 
E 2 GTP B 1 1001 1001 GTP GTP . 
F 3 MG B 1 1002 1002 MG MG . 
G 4 HOH A 1 1101 2 HOH HOH . 
G 4 HOH A 2 1102 10 HOH HOH . 
G 4 HOH A 3 1103 11 HOH HOH . 
G 4 HOH A 4 1104 12 HOH HOH . 
G 4 HOH A 5 1105 13 HOH HOH . 
G 4 HOH A 6 1106 14 HOH HOH . 
G 4 HOH A 7 1107 15 HOH HOH . 
G 4 HOH A 8 1108 17 HOH HOH . 
G 4 HOH A 9 1109 21 HOH HOH . 
G 4 HOH A 10 1110 22 HOH HOH . 
G 4 HOH A 11 1111 24 HOH HOH . 
G 4 HOH A 12 1112 25 HOH HOH . 
G 4 HOH A 13 1113 26 HOH HOH . 
G 4 HOH A 14 1114 27 HOH HOH . 
G 4 HOH A 15 1115 28 HOH HOH . 
G 4 HOH A 16 1116 29 HOH HOH . 
G 4 HOH A 17 1117 30 HOH HOH . 
G 4 HOH A 18 1118 32 HOH HOH . 
G 4 HOH A 19 1119 33 HOH HOH . 
G 4 HOH A 20 1120 34 HOH HOH . 
G 4 HOH A 21 1121 37 HOH HOH . 
G 4 HOH A 22 1122 39 HOH HOH . 
G 4 HOH A 23 1123 40 HOH HOH . 
G 4 HOH A 24 1124 43 HOH HOH . 
G 4 HOH A 25 1125 44 HOH HOH . 
G 4 HOH A 26 1126 47 HOH HOH . 
G 4 HOH A 27 1127 49 HOH HOH . 
G 4 HOH A 28 1128 52 HOH HOH . 
G 4 HOH A 29 1129 57 HOH HOH . 
G 4 HOH A 30 1130 63 HOH HOH . 
G 4 HOH A 31 1131 69 HOH HOH . 
G 4 HOH A 32 1132 71 HOH HOH . 
G 4 HOH A 33 1133 73 HOH HOH . 
G 4 HOH A 34 1134 81 HOH HOH . 
G 4 HOH A 35 1135 84 HOH HOH . 
G 4 HOH A 36 1136 89 HOH HOH . 
G 4 HOH A 37 1137 90 HOH HOH . 
G 4 HOH A 38 1138 92 HOH HOH . 
G 4 HOH A 39 1139 95 HOH HOH . 
G 4 HOH A 40 1140 96 HOH HOH . 
G 4 HOH A 41 1141 99 HOH HOH . 
G 4 HOH A 42 1142 104 HOH HOH . 
G 4 HOH A 43 1143 105 HOH HOH . 
G 4 HOH A 44 1144 108 HOH HOH . 
G 4 HOH A 45 1145 109 HOH HOH . 
G 4 HOH A 46 1146 110 HOH HOH . 
G 4 HOH A 47 1147 111 HOH HOH . 
G 4 HOH A 48 1148 112 HOH HOH . 
G 4 HOH A 49 1149 113 HOH HOH . 
G 4 HOH A 50 1150 114 HOH HOH . 
G 4 HOH A 51 1151 115 HOH HOH . 
G 4 HOH A 52 1152 116 HOH HOH . 
G 4 HOH A 53 1153 118 HOH HOH . 
G 4 HOH A 54 1154 121 HOH HOH . 
G 4 HOH A 55 1155 122 HOH HOH . 
G 4 HOH A 56 1156 125 HOH HOH . 
G 4 HOH A 57 1157 129 HOH HOH . 
G 4 HOH A 58 1158 131 HOH HOH . 
G 4 HOH A 59 1159 134 HOH HOH . 
G 4 HOH A 60 1160 135 HOH HOH . 
G 4 HOH A 61 1161 136 HOH HOH . 
G 4 HOH A 62 1162 138 HOH HOH . 
G 4 HOH A 63 1163 139 HOH HOH . 
G 4 HOH A 64 1164 141 HOH HOH . 
G 4 HOH A 65 1165 143 HOH HOH . 
G 4 HOH A 66 1166 144 HOH HOH . 
G 4 HOH A 67 1167 145 HOH HOH . 
G 4 HOH A 68 1168 146 HOH HOH . 
G 4 HOH A 69 1169 148 HOH HOH . 
G 4 HOH A 70 1170 152 HOH HOH . 
G 4 HOH A 71 1171 153 HOH HOH . 
G 4 HOH A 72 1172 154 HOH HOH . 
G 4 HOH A 73 1173 155 HOH HOH . 
G 4 HOH A 74 1174 156 HOH HOH . 
G 4 HOH A 75 1175 157 HOH HOH . 
G 4 HOH A 76 1176 162 HOH HOH . 
G 4 HOH A 77 1177 163 HOH HOH . 
G 4 HOH A 78 1178 167 HOH HOH . 
G 4 HOH A 79 1179 168 HOH HOH . 
G 4 HOH A 80 1180 170 HOH HOH . 
G 4 HOH A 81 1181 173 HOH HOH . 
G 4 HOH A 82 1182 174 HOH HOH . 
G 4 HOH A 83 1183 176 HOH HOH . 
G 4 HOH A 84 1184 177 HOH HOH . 
G 4 HOH A 85 1185 178 HOH HOH . 
G 4 HOH A 86 1186 180 HOH HOH . 
H 4 HOH B 1 1101 1 HOH HOH . 
H 4 HOH B 2 1102 3 HOH HOH . 
H 4 HOH B 3 1103 4 HOH HOH . 
H 4 HOH B 4 1104 5 HOH HOH . 
H 4 HOH B 5 1105 6 HOH HOH . 
H 4 HOH B 6 1106 7 HOH HOH . 
H 4 HOH B 7 1107 8 HOH HOH . 
H 4 HOH B 8 1108 9 HOH HOH . 
H 4 HOH B 9 1109 16 HOH HOH . 
H 4 HOH B 10 1110 18 HOH HOH . 
H 4 HOH B 11 1111 19 HOH HOH . 
H 4 HOH B 12 1112 20 HOH HOH . 
H 4 HOH B 13 1113 23 HOH HOH . 
H 4 HOH B 14 1114 31 HOH HOH . 
H 4 HOH B 15 1115 35 HOH HOH . 
H 4 HOH B 16 1116 36 HOH HOH . 
H 4 HOH B 17 1117 38 HOH HOH . 
H 4 HOH B 18 1118 41 HOH HOH . 
H 4 HOH B 19 1119 42 HOH HOH . 
H 4 HOH B 20 1120 45 HOH HOH . 
H 4 HOH B 21 1121 46 HOH HOH . 
H 4 HOH B 22 1122 48 HOH HOH . 
H 4 HOH B 23 1123 50 HOH HOH . 
H 4 HOH B 24 1124 51 HOH HOH . 
H 4 HOH B 25 1125 53 HOH HOH . 
H 4 HOH B 26 1126 54 HOH HOH . 
H 4 HOH B 27 1127 55 HOH HOH . 
H 4 HOH B 28 1128 56 HOH HOH . 
H 4 HOH B 29 1129 58 HOH HOH . 
H 4 HOH B 30 1130 59 HOH HOH . 
H 4 HOH B 31 1131 60 HOH HOH . 
H 4 HOH B 32 1132 61 HOH HOH . 
H 4 HOH B 33 1133 62 HOH HOH . 
H 4 HOH B 34 1134 64 HOH HOH . 
H 4 HOH B 35 1135 65 HOH HOH . 
H 4 HOH B 36 1136 66 HOH HOH . 
H 4 HOH B 37 1137 67 HOH HOH . 
H 4 HOH B 38 1138 68 HOH HOH . 
H 4 HOH B 39 1139 70 HOH HOH . 
H 4 HOH B 40 1140 72 HOH HOH . 
H 4 HOH B 41 1141 74 HOH HOH . 
H 4 HOH B 42 1142 75 HOH HOH . 
H 4 HOH B 43 1143 76 HOH HOH . 
H 4 HOH B 44 1144 77 HOH HOH . 
H 4 HOH B 45 1145 78 HOH HOH . 
H 4 HOH B 46 1146 79 HOH HOH . 
H 4 HOH B 47 1147 80 HOH HOH . 
H 4 HOH B 48 1148 82 HOH HOH . 
H 4 HOH B 49 1149 83 HOH HOH . 
H 4 HOH B 50 1150 85 HOH HOH . 
H 4 HOH B 51 1151 86 HOH HOH . 
H 4 HOH B 52 1152 87 HOH HOH . 
H 4 HOH B 53 1153 88 HOH HOH . 
H 4 HOH B 54 1154 91 HOH HOH . 
H 4 HOH B 55 1155 93 HOH HOH . 
H 4 HOH B 56 1156 94 HOH HOH . 
H 4 HOH B 57 1157 97 HOH HOH . 
H 4 HOH B 58 1158 98 HOH HOH . 
H 4 HOH B 59 1159 100 HOH HOH . 
H 4 HOH B 60 1160 101 HOH HOH . 
H 4 HOH B 61 1161 102 HOH HOH . 
H 4 HOH B 62 1162 103 HOH HOH . 
H 4 HOH B 63 1163 106 HOH HOH . 
H 4 HOH B 64 1164 107 HOH HOH . 
H 4 HOH B 65 1165 117 HOH HOH . 
H 4 HOH B 66 1166 119 HOH HOH . 
H 4 HOH B 67 1167 120 HOH HOH . 
H 4 HOH B 68 1168 123 HOH HOH . 
H 4 HOH B 69 1169 124 HOH HOH . 
H 4 HOH B 70 1170 126 HOH HOH . 
H 4 HOH B 71 1171 127 HOH HOH . 
H 4 HOH B 72 1172 128 HOH HOH . 
H 4 HOH B 73 1173 130 HOH HOH . 
H 4 HOH B 74 1174 132 HOH HOH . 
H 4 HOH B 75 1175 133 HOH HOH . 
H 4 HOH B 76 1176 137 HOH HOH . 
H 4 HOH B 77 1177 140 HOH HOH . 
H 4 HOH B 78 1178 142 HOH HOH . 
H 4 HOH B 79 1179 147 HOH HOH . 
H 4 HOH B 80 1180 149 HOH HOH . 
H 4 HOH B 81 1181 150 HOH HOH . 
H 4 HOH B 82 1182 151 HOH HOH . 
H 4 HOH B 83 1183 158 HOH HOH . 
H 4 HOH B 84 1184 159 HOH HOH . 
H 4 HOH B 85 1185 160 HOH HOH . 
H 4 HOH B 86 1186 161 HOH HOH . 
H 4 HOH B 87 1187 164 HOH HOH . 
H 4 HOH B 88 1188 165 HOH HOH . 
H 4 HOH B 89 1189 166 HOH HOH . 
H 4 HOH B 90 1190 169 HOH HOH . 
H 4 HOH B 91 1191 171 HOH HOH . 
H 4 HOH B 92 1192 172 HOH HOH . 
H 4 HOH B 93 1193 175 HOH HOH . 
H 4 HOH B 94 1194 179 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               26.2 
_atom_site.Cartn_y               19.269 
_atom_site.Cartn_z               87.65 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#