data_4JT3
#
_model_server_result.job_id            gdeAttgyrMCuTuI98_5qtQ 
_model_server_result.datetime_utc      '2024-11-27 14:00:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jt3 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":814}' 
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_entry.id    4JT3 
#
_exptl.entry_id    4JT3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JT3 
_cell.length_a            70.75 
_cell.length_b            105.931 
_cell.length_c            113.018 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4JT3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 70.75 0 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 70.75 0 113.018 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 113.018 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
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_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 133 n n 
C1 C2 EDO sing 134 n n 
C1 H11 EDO sing 135 n n 
C1 H12 EDO sing 136 n n 
O1 HO1 EDO sing 137 n n 
C2 O2 EDO sing 138 n n 
C2 H21 EDO sing 139 n n 
C2 H22 EDO sing 140 n n 
O2 HO2 EDO sing 141 n n 
#
_atom_sites.entry_id                     4JT3 
_atom_sites.fract_transf_matrix[1][1]    0.014134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00944 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 801 1 PO4 PO4 . 
C 2 PO4 A 1 802 2 PO4 PO4 . 
D 2 PO4 A 1 803 3 PO4 PO4 . 
E 2 PO4 A 1 804 4 PO4 PO4 . 
F 3 1PH A 1 805 1 1PH 740 . 
G 4 EDO A 1 806 2 EDO EDO . 
H 4 EDO A 1 807 3 EDO EDO . 
I 4 EDO A 1 808 4 EDO EDO . 
J 4 EDO A 1 809 6 EDO EDO . 
K 4 EDO A 1 810 8 EDO EDO . 
L 4 EDO A 1 811 9 EDO EDO . 
M 4 EDO A 1 812 11 EDO EDO . 
N 4 EDO A 1 813 12 EDO EDO . 
O 4 EDO A 1 814 13 EDO EDO . 
P 4 EDO A 1 815 14 EDO EDO . 
Q 5 HOH A 1 901 1 HOH HOH . 
Q 5 HOH A 2 902 2 HOH HOH . 
Q 5 HOH A 3 903 3 HOH HOH . 
Q 5 HOH A 4 904 5 HOH HOH . 
Q 5 HOH A 5 905 6 HOH HOH . 
Q 5 HOH A 6 906 7 HOH HOH . 
Q 5 HOH A 7 907 8 HOH HOH . 
Q 5 HOH A 8 908 9 HOH HOH . 
Q 5 HOH A 9 909 10 HOH HOH . 
Q 5 HOH A 10 910 11 HOH HOH . 
Q 5 HOH A 11 911 12 HOH HOH . 
Q 5 HOH A 12 912 13 HOH HOH . 
Q 5 HOH A 13 913 14 HOH HOH . 
Q 5 HOH A 14 914 15 HOH HOH . 
Q 5 HOH A 15 915 16 HOH HOH . 
Q 5 HOH A 16 916 17 HOH HOH . 
Q 5 HOH A 17 917 18 HOH HOH . 
Q 5 HOH A 18 918 19 HOH HOH . 
Q 5 HOH A 19 919 20 HOH HOH . 
Q 5 HOH A 20 920 21 HOH HOH . 
Q 5 HOH A 21 921 22 HOH HOH . 
Q 5 HOH A 22 922 23 HOH HOH . 
Q 5 HOH A 23 923 25 HOH HOH . 
Q 5 HOH A 24 924 26 HOH HOH . 
Q 5 HOH A 25 925 27 HOH HOH . 
Q 5 HOH A 26 926 28 HOH HOH . 
Q 5 HOH A 27 927 29 HOH HOH . 
Q 5 HOH A 28 928 30 HOH HOH . 
Q 5 HOH A 29 929 32 HOH HOH . 
Q 5 HOH A 30 930 33 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . O 4 53.994 17.933 47.568 1 126.28 ? C1 EDO 814 A 1 
HETATM 2 O O1 EDO . . . O 4 53.689 18.275 48.908 1 126.32 ? O1 EDO 814 A 1 
HETATM 3 C C2 EDO . . . O 4 53.17 16.696 47.151 1 126.24 ? C2 EDO 814 A 1 
HETATM 4 O O2 EDO . . . O 4 51.79 16.973 47.307 1 126.26 ? O2 EDO 814 A 1 
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_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
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