data_4JT5
#
_model_server_result.job_id            HSVK5JgbeUvrLWNf7MFIEQ 
_model_server_result.datetime_utc      '2025-04-15 15:00:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jt5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2601}' 
#
_entry.id    4JT5 
#
_exptl.entry_id    4JT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.338 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-amino-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]-1H-indol-5-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JT5 
_cell.length_a            139.4 
_cell.length_b            163.2 
_cell.length_c            207.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1 
C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C16 H16 N6 O' 
_chem_comp.formula_weight    308.338 
_chem_comp.id                P2X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-amino-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]-1H-indol-5-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 N6 P2X doub 235 n y 
C19 N4 P2X sing 236 n y 
N6 C15 P2X sing 237 n y 
N4 C11 P2X doub 238 n y 
C15 N7 P2X sing 239 n n 
C15 C10 P2X doub 240 n y 
C11 C10 P2X sing 241 n y 
C11 N2 P2X sing 242 n y 
C10 C9 P2X sing 243 n y 
C13 C8 P2X sing 244 n n 
N2 C8 P2X sing 245 n n 
N2 N3 P2X sing 246 n y 
C16 C12 P2X doub 247 n y 
C16 C17 P2X sing 248 n y 
C9 N3 P2X doub 249 n y 
C9 C12 P2X sing 250 n n 
C8 C14 P2X sing 251 n n 
C12 N5 P2X sing 252 n y 
C20 C17 P2X doub 253 n y 
C20 C22 P2X sing 254 n y 
C17 C18 P2X sing 255 n y 
O1 C22 P2X sing 256 n n 
C22 C23 P2X doub 257 n y 
N5 C18 P2X sing 258 n y 
C18 C21 P2X doub 259 n y 
C23 C21 P2X sing 260 n y 
O1 H1 P2X sing 261 n n 
C20 H2 P2X sing 262 n n 
C21 H3 P2X sing 263 n n 
C23 H4 P2X sing 264 n n 
C16 H5 P2X sing 265 n n 
N5 H6 P2X sing 266 n n 
C8 H7 P2X sing 267 n n 
C13 H8 P2X sing 268 n n 
C13 H9 P2X sing 269 n n 
C13 H10 P2X sing 270 n n 
C14 H11 P2X sing 271 n n 
C14 H12 P2X sing 272 n n 
C14 H13 P2X sing 273 n n 
C19 H14 P2X sing 274 n n 
N7 H15 P2X sing 275 n n 
N7 H16 P2X sing 276 n n 
#
_atom_sites.entry_id                     4JT5 
_atom_sites.fract_transf_matrix[1][1]    0.007174 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 P2X B 1 2601 1 P2X P2X . 
F 3 P2X A 1 2601 1 P2X P2X . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P2X . . . F 3 57.851 1.824 -47.34 1 37.09 ? O1 P2X 2601 A 1 
HETATM 2 C C22 P2X . . . F 3 56.554 1.421 -47.194 1 37.9 ? C22 P2X 2601 A 1 
HETATM 3 C C20 P2X . . . F 3 55.815 1.116 -48.338 1 38.09 ? C20 P2X 2601 A 1 
HETATM 4 C C17 P2X . . . F 3 54.488 0.705 -48.166 1 38.12 ? C17 P2X 2601 A 1 
HETATM 5 C C18 P2X . . . F 3 53.868 0.589 -46.827 1 37.71 ? C18 P2X 2601 A 1 
HETATM 6 C C21 P2X . . . F 3 54.628 0.898 -45.706 1 37.91 ? C21 P2X 2601 A 1 
HETATM 7 C C23 P2X . . . F 3 55.962 1.31 -45.911 1 38.28 ? C23 P2X 2601 A 1 
HETATM 8 C C16 P2X . . . F 3 53.553 0.348 -49.167 1 38.07 ? C16 P2X 2601 A 1 
HETATM 9 C C12 P2X . . . F 3 52.408 0.03 -48.438 1 37.97 ? C12 P2X 2601 A 1 
HETATM 10 N N5 P2X . . . F 3 52.603 0.172 -47.077 1 37.63 ? N5 P2X 2601 A 1 
HETATM 11 C C9 P2X . . . F 3 51.168 -0.412 -49.134 1 38.01 ? C9 P2X 2601 A 1 
HETATM 12 C C10 P2X . . . F 3 50.646 -0.076 -50.495 1 38 ? C10 P2X 2601 A 1 
HETATM 13 C C11 P2X . . . F 3 49.446 -0.782 -50.62 1 37.94 ? C11 P2X 2601 A 1 
HETATM 14 N N2 P2X . . . F 3 49.225 -1.514 -49.427 1 37.69 ? N2 P2X 2601 A 1 
HETATM 15 C C8 P2X . . . F 3 48.108 -2.406 -49.071 1 37.53 ? C8 P2X 2601 A 1 
HETATM 16 C C13 P2X . . . F 3 47.483 -3.088 -50.3 1 37.52 ? C13 P2X 2601 A 1 
HETATM 17 C C14 P2X . . . F 3 47.104 -1.63 -48.231 1 37.54 ? C14 P2X 2601 A 1 
HETATM 18 N N3 P2X . . . F 3 50.294 -1.263 -48.553 1 37.83 ? N3 P2X 2601 A 1 
HETATM 19 N N4 P2X . . . F 3 48.731 -0.668 -51.774 1 38.05 ? N4 P2X 2601 A 1 
HETATM 20 C C19 P2X . . . F 3 49.165 0.108 -52.781 1 38.16 ? C19 P2X 2601 A 1 
HETATM 21 N N6 P2X . . . F 3 50.313 0.797 -52.687 1 37.94 ? N6 P2X 2601 A 1 
HETATM 22 C C15 P2X . . . F 3 51.069 0.727 -51.569 1 37.99 ? C15 P2X 2601 A 1 
HETATM 23 N N7 P2X . . . F 3 52.214 1.448 -51.547 1 37.97 ? N7 P2X 2601 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#