data_4JT8 # _model_server_result.job_id 1-Og8kJzPw_rSIYcvFGmAw _model_server_result.datetime_utc '2025-01-10 16:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4JT8 # _exptl.entry_id 4JT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.515 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-{2-[(2,2-dimethylpropanoyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JT8 _cell.length_a 117.28 _cell.length_b 117.28 _cell.length_c 45.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 142 A CYS 256 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc2 A SG CYS 145 A CYS 259 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 166 A CYS 280 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 A SG CYS 169 A CYS 283 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C19 H27 N5 O2 S' _chem_comp.formula_weight 389.515 _chem_comp.id 1NR _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-{2-[(2,2-dimethylpropanoyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAY CAX 1NR sing 1 n n CAX CAZ 1NR sing 2 n n CAX CBA 1NR sing 3 n n CAX CAA 1NR sing 4 n n CAA OAC 1NR doub 5 n n CAA NAB 1NR sing 6 n n NAB CAD 1NR sing 7 n n CAD CAE 1NR sing 8 n n CAE CAF 1NR sing 9 n n CAF CAK 1NR sing 10 n n CAF CAG 1NR sing 11 n n CAK CAJ 1NR sing 12 n n CAJ NAI 1NR sing 13 n n CAG CAH 1NR sing 14 n n CAH NAI 1NR sing 15 n n NAI C6 1NR sing 16 n n C6 N1 1NR doub 17 n y C6 C5 1NR sing 18 n y N1 C2 1NR sing 19 n y C2 N3 1NR doub 20 n y N3 C4 1NR sing 21 n y C4 CAR 1NR sing 22 n y C4 C5 1NR doub 23 n y CAR CAS 1NR doub 24 n y C5 SAT 1NR sing 25 n y SAT CAS 1NR sing 26 n y CAS CAU 1NR sing 27 n n CAU OAV 1NR doub 28 n n CAU NAW 1NR sing 29 n n CAY H1 1NR sing 30 n n CAY H2 1NR sing 31 n n CAY H3 1NR sing 32 n n CAZ H4 1NR sing 33 n n CAZ H5 1NR sing 34 n n CAZ H6 1NR sing 35 n n CBA H7 1NR sing 36 n n CBA H8 1NR sing 37 n n CBA H9 1NR sing 38 n n NAB H10 1NR sing 39 n n CAD H11 1NR sing 40 n n CAD H12 1NR sing 41 n n CAE H13 1NR sing 42 n n CAE H14 1NR sing 43 n n CAF H15 1NR sing 44 n n CAK H16 1NR sing 45 n n CAK H17 1NR sing 46 n n CAJ H18 1NR sing 47 n n CAJ H19 1NR sing 48 n n CAG H20 1NR sing 49 n n CAG H21 1NR sing 50 n n CAH H22 1NR sing 51 n n CAH H23 1NR sing 52 n n C2 H24 1NR sing 53 n n CAR H25 1NR sing 54 n n NAW H27 1NR sing 55 n n NAW H28 1NR sing 56 n n # _atom_sites.entry_id 4JT8 _atom_sites.fract_transf_matrix[1][1] 0.008527 _atom_sites.fract_transf_matrix[1][2] 0.004923 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 1NR A 1 402 1 1NR 1NR . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 62 HOH HOH . D 4 HOH A 63 563 63 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 65 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 67 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 69 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAY 1NR . . . C 3 24.362 48.133 -15.775 1 41.9 ? CAY 1NR 402 A 1 HETATM 2 C CAX 1NR . . . C 3 23.482 47.248 -14.929 1 41.54 ? CAX 1NR 402 A 1 HETATM 3 C CAZ 1NR . . . C 3 22.914 48.081 -13.781 1 42.05 ? CAZ 1NR 402 A 1 HETATM 4 C CBA 1NR . . . C 3 22.337 46.753 -15.798 1 41.36 ? CBA 1NR 402 A 1 HETATM 5 C CAA 1NR . . . C 3 24.316 46.084 -14.364 1 41.06 ? CAA 1NR 402 A 1 HETATM 6 O OAC 1NR . . . C 3 24.977 46.238 -13.34 1 42.79 ? OAC 1NR 402 A 1 HETATM 7 N NAB 1NR . . . C 3 24.282 44.927 -15.045 1 40.04 ? NAB 1NR 402 A 1 HETATM 8 C CAD 1NR . . . C 3 25.053 43.744 -14.615 1 39.17 ? CAD 1NR 402 A 1 HETATM 9 C CAE 1NR . . . C 3 24.174 42.719 -13.855 1 39 ? CAE 1NR 402 A 1 HETATM 10 C CAF 1NR . . . C 3 23.729 43.231 -12.455 1 38.33 ? CAF 1NR 402 A 1 HETATM 11 C CAK 1NR . . . C 3 22.636 42.299 -11.901 1 37.45 ? CAK 1NR 402 A 1 HETATM 12 C CAJ 1NR . . . C 3 22.208 42.715 -10.479 1 36.91 ? CAJ 1NR 402 A 1 HETATM 13 C CAG 1NR . . . C 3 24.932 43.358 -11.474 1 37.27 ? CAG 1NR 402 A 1 HETATM 14 C CAH 1NR . . . C 3 24.453 43.781 -10.064 1 36.51 ? CAH 1NR 402 A 1 HETATM 15 N NAI 1NR . . . C 3 23.4 42.828 -9.589 1 36.89 ? NAI 1NR 402 A 1 HETATM 16 C C6 1NR . . . C 3 23.559 42.14 -8.418 1 34.2 ? C6 1NR 402 A 1 HETATM 17 N N1 1NR . . . C 3 24.427 42.677 -7.533 1 32.5 ? N1 1NR 402 A 1 HETATM 18 C C2 1NR . . . C 3 24.681 42.073 -6.311 1 31 ? C2 1NR 402 A 1 HETATM 19 N N3 1NR . . . C 3 24.003 40.888 -6.039 1 32.98 ? N3 1NR 402 A 1 HETATM 20 C C4 1NR . . . C 3 23.132 40.356 -6.922 1 33.11 ? C4 1NR 402 A 1 HETATM 21 C CAR 1NR . . . C 3 22.415 39.215 -6.763 1 32.9 ? CAR 1NR 402 A 1 HETATM 22 C C5 1NR . . . C 3 22.917 40.987 -8.106 1 33.13 ? C5 1NR 402 A 1 HETATM 23 S SAT 1NR . . . C 3 21.79 40.024 -8.922 1 34.56 ? SAT 1NR 402 A 1 HETATM 24 C CAS 1NR . . . C 3 21.617 38.898 -7.788 1 33.55 ? CAS 1NR 402 A 1 HETATM 25 C CAU 1NR . . . C 3 20.789 37.847 -7.885 1 34.33 ? CAU 1NR 402 A 1 HETATM 26 O OAV 1NR . . . C 3 20.242 37.598 -8.955 1 35.25 ? OAV 1NR 402 A 1 HETATM 27 N NAW 1NR . . . C 3 20.52 37.167 -6.765 1 32.91 ? NAW 1NR 402 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #