data_4JTB # _model_server_result.job_id 5JFKOo7lW2tTndo1TiIjXA _model_server_result.datetime_utc '2024-11-15 17:30:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4JTB # _exptl.entry_id 4JTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JTB _cell.length_a 133.153 _cell.length_b 133.153 _cell.length_c 38.397 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.426 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 224 n n C1 O1 NAG sing 225 n n C1 O5 NAG sing 226 n n C1 H1 NAG sing 227 n n C2 C3 NAG sing 228 n n C2 N2 NAG sing 229 n n C2 H2 NAG sing 230 n n C3 C4 NAG sing 231 n n C3 O3 NAG sing 232 n n C3 H3 NAG sing 233 n n C4 C5 NAG sing 234 n n C4 O4 NAG sing 235 n n C4 H4 NAG sing 236 n n C5 C6 NAG sing 237 n n C5 O5 NAG sing 238 n n C5 H5 NAG sing 239 n n C6 O6 NAG sing 240 n n C6 H61 NAG sing 241 n n C6 H62 NAG sing 242 n n C7 C8 NAG sing 243 n n C7 N2 NAG sing 244 n n C7 O7 NAG doub 245 n n C8 H81 NAG sing 246 n n C8 H82 NAG sing 247 n n C8 H83 NAG sing 248 n n N2 HN2 NAG sing 249 n n O1 HO1 NAG sing 250 n n O3 HO3 NAG sing 251 n n O4 HO4 NAG sing 252 n n O6 HO6 NAG sing 253 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JTB _atom_sites.fract_transf_matrix[1][1] 0.00751 _atom_sites.fract_transf_matrix[1][2] 0.004336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 3 NAG A 1 302 1 NAG NAG . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 1 HOH HOH . D 4 HOH A 15 415 2 HOH HOH . D 4 HOH A 16 416 3 HOH HOH . D 4 HOH A 17 417 4 HOH HOH . D 4 HOH A 18 418 5 HOH HOH . D 4 HOH A 19 419 6 HOH HOH . D 4 HOH A 20 420 7 HOH HOH . D 4 HOH A 21 421 8 HOH HOH . D 4 HOH A 22 422 9 HOH HOH . D 4 HOH A 23 423 10 HOH HOH . D 4 HOH A 24 424 11 HOH HOH . D 4 HOH A 25 425 12 HOH HOH . D 4 HOH A 26 426 13 HOH HOH . D 4 HOH A 27 427 14 HOH HOH . D 4 HOH A 28 428 15 HOH HOH . D 4 HOH A 29 429 16 HOH HOH . D 4 HOH A 30 430 17 HOH HOH . D 4 HOH A 31 431 18 HOH HOH . D 4 HOH A 32 432 19 HOH HOH . D 4 HOH A 33 433 21 HOH HOH . D 4 HOH A 34 434 22 HOH HOH . D 4 HOH A 35 435 25 HOH HOH . D 4 HOH A 36 436 27 HOH HOH . D 4 HOH A 37 437 1 HOH HOH . D 4 HOH A 38 438 2 HOH HOH . D 4 HOH A 39 439 3 HOH HOH . D 4 HOH A 40 440 4 HOH HOH . D 4 HOH A 41 441 5 HOH HOH . D 4 HOH A 42 442 1 HOH HOH . D 4 HOH A 43 443 2 HOH HOH . D 4 HOH A 44 444 1 HOH HOH . D 4 HOH A 45 445 2 HOH HOH . D 4 HOH A 46 446 1 HOH HOH . D 4 HOH A 47 447 2 HOH HOH . D 4 HOH A 48 448 3 HOH HOH . D 4 HOH A 49 449 1 HOH HOH . D 4 HOH A 50 450 2 HOH HOH . D 4 HOH A 51 451 3 HOH HOH . D 4 HOH A 52 452 4 HOH HOH . D 4 HOH A 53 453 6 HOH HOH . D 4 HOH A 54 454 7 HOH HOH . D 4 HOH A 55 455 8 HOH HOH . D 4 HOH A 56 456 9 HOH HOH . D 4 HOH A 57 457 10 HOH HOH . D 4 HOH A 58 458 11 HOH HOH . D 4 HOH A 59 459 1 HOH HOH . D 4 HOH A 60 460 2 HOH HOH . D 4 HOH A 61 461 3 HOH HOH . D 4 HOH A 62 462 4 HOH HOH . D 4 HOH A 63 463 5 HOH HOH . D 4 HOH A 64 464 6 HOH HOH . D 4 HOH A 65 465 7 HOH HOH . D 4 HOH A 66 466 8 HOH HOH . D 4 HOH A 67 467 9 HOH HOH . D 4 HOH A 68 468 10 HOH HOH . D 4 HOH A 69 469 11 HOH HOH . D 4 HOH A 70 470 12 HOH HOH . D 4 HOH A 71 471 13 HOH HOH . D 4 HOH A 72 472 14 HOH HOH . D 4 HOH A 73 473 15 HOH HOH . D 4 HOH A 74 474 16 HOH HOH . D 4 HOH A 75 475 17 HOH HOH . D 4 HOH A 76 476 18 HOH HOH . D 4 HOH A 77 477 19 HOH HOH . D 4 HOH A 78 478 20 HOH HOH . D 4 HOH A 79 479 21 HOH HOH . D 4 HOH A 80 480 22 HOH HOH . D 4 HOH A 81 481 23 HOH HOH . D 4 HOH A 82 482 24 HOH HOH . D 4 HOH A 83 483 25 HOH HOH . D 4 HOH A 84 484 26 HOH HOH . D 4 HOH A 85 485 27 HOH HOH . D 4 HOH A 86 486 28 HOH HOH . D 4 HOH A 87 487 29 HOH HOH . D 4 HOH A 88 488 30 HOH HOH . D 4 HOH A 89 489 31 HOH HOH . D 4 HOH A 90 490 32 HOH HOH . D 4 HOH A 91 491 33 HOH HOH . D 4 HOH A 92 492 34 HOH HOH . D 4 HOH A 93 493 35 HOH HOH . D 4 HOH A 94 494 36 HOH HOH . D 4 HOH A 95 495 37 HOH HOH . D 4 HOH A 96 496 38 HOH HOH . D 4 HOH A 97 497 39 HOH HOH . D 4 HOH A 98 498 40 HOH HOH . D 4 HOH A 99 499 41 HOH HOH . D 4 HOH A 100 500 42 HOH HOH . D 4 HOH A 101 501 43 HOH HOH . D 4 HOH A 102 502 44 HOH HOH . D 4 HOH A 103 503 45 HOH HOH . D 4 HOH A 104 504 46 HOH HOH . D 4 HOH A 105 505 47 HOH HOH . D 4 HOH A 106 506 48 HOH HOH . D 4 HOH A 107 507 49 HOH HOH . D 4 HOH A 108 508 50 HOH HOH . D 4 HOH A 109 509 51 HOH HOH . D 4 HOH A 110 510 52 HOH HOH . D 4 HOH A 111 511 53 HOH HOH . D 4 HOH A 112 512 54 HOH HOH . D 4 HOH A 113 513 55 HOH HOH . D 4 HOH A 114 514 56 HOH HOH . D 4 HOH A 115 515 57 HOH HOH . D 4 HOH A 116 516 58 HOH HOH . D 4 HOH A 117 517 59 HOH HOH . D 4 HOH A 118 518 60 HOH HOH . D 4 HOH A 119 519 61 HOH HOH . D 4 HOH A 120 520 62 HOH HOH . D 4 HOH A 121 521 63 HOH HOH . D 4 HOH A 122 522 64 HOH HOH . D 4 HOH A 123 523 65 HOH HOH . D 4 HOH A 124 524 68 HOH HOH . D 4 HOH A 125 525 69 HOH HOH . D 4 HOH A 126 526 70 HOH HOH . D 4 HOH A 127 527 71 HOH HOH . D 4 HOH A 128 528 3 HOH HOH . D 4 HOH A 129 529 5 HOH HOH . D 4 HOH A 130 530 1 HOH HOH . D 4 HOH A 131 531 3 HOH HOH . D 4 HOH A 132 532 4 HOH HOH . D 4 HOH A 133 533 7 HOH HOH . D 4 HOH A 134 534 2 HOH HOH . D 4 HOH A 135 535 4 HOH HOH . D 4 HOH A 136 536 5 HOH HOH . D 4 HOH A 137 537 6 HOH HOH . D 4 HOH A 138 538 7 HOH HOH . D 4 HOH A 139 539 8 HOH HOH . D 4 HOH A 140 540 9 HOH HOH . D 4 HOH A 141 541 10 HOH HOH . D 4 HOH A 142 542 11 HOH HOH . D 4 HOH A 143 543 12 HOH HOH . D 4 HOH A 144 544 13 HOH HOH . D 4 HOH A 145 545 14 HOH HOH . D 4 HOH A 146 546 15 HOH HOH . D 4 HOH A 147 547 16 HOH HOH . D 4 HOH A 148 548 18 HOH HOH . D 4 HOH A 149 549 19 HOH HOH . D 4 HOH A 150 550 20 HOH HOH . D 4 HOH A 151 551 21 HOH HOH . D 4 HOH A 152 552 22 HOH HOH . D 4 HOH A 153 553 23 HOH HOH . D 4 HOH A 154 554 24 HOH HOH . D 4 HOH A 155 555 27 HOH HOH . D 4 HOH A 156 556 28 HOH HOH . D 4 HOH A 157 557 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 10.132 -43.448 -17.07 1 46.64 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . C 3 10.583 -43.623 -18.557 1 55.01 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . C 3 12.112 -43.625 -18.769 1 59.4 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . C 3 12.691 -42.382 -18.134 1 56.32 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . C 3 12.245 -42.22 -16.668 1 53.8 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . C 3 12.325 -40.734 -16.371 1 51.67 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . C 3 8.798 -45.179 -19.479 1 60.65 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . C 3 8.61 -46.559 -20.035 1 56.76 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . C 3 10.069 -44.877 -19.124 1 61.01 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . C 3 12.558 -43.683 -20.136 1 60.1 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . C 3 14.11 -42.36 -18.281 1 60.51 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . C 3 10.913 -42.578 -16.269 1 48.79 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . C 3 12.457 -40.624 -14.982 1 57.04 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . C 3 7.797 -44.451 -19.372 1 63.73 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #