data_4JTC
#
_model_server_result.job_id            qtolmGrvTlvc-_ZUmzuojg 
_model_server_result.datetime_utc      '2024-11-28 20:01:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1001}' 
#
_entry.id    4JTC 
#
_exptl.entry_id    4JTC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JTC 
_cell.length_a            145.434 
_cell.length_b            145.434 
_cell.length_c            285.591 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? octameric 8 author_defined_assembly 1 
? nonameric 9 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1,2,3,4 
C,D,AA,BA,CA,DA,EA,FA 2 2,3,4 
C,D,E,AA,BA,CA,DA,EA,FA 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 145.434 0 
3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 72.717 72.717 0 
4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -72.717 72.717 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 7 Y CYS 7 1_555 E SG CYS 28 Y CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 E SG CYS 13 Y CYS 13 1_555 E SG CYS 33 Y CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 E SG CYS 17 Y CYS 17 1_555 E SG CYS 33 Y CYS 33 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? 
disulf ? disulf4 E SG CYS 17 Y CYS 17 1_555 E SG CYS 35 Y CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 E C PCA 1 Y PCA 1 1_555 E N PHE 2 Y PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 B O GLY 391 B GLY 372 1_555 G CS CS . B CS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.487 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     4JTC 
_atom_sites.fract_transf_matrix[1][1]    0.006876 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006876 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 NAP A 1 1001 1001 NAP NAP . 
G 5 CS B 1 501 496 CS CS . 
H 5 CS B 1 502 498 CS CS . 
I 5 CS B 1 503 499 CS CS . 
J 6 PGW B 1 504 500 PGW PGB . 
K 6 PGW B 1 505 501 PGW PGB . 
L 6 PGW B 1 506 502 PGW PGB . 
M 6 PGW B 1 507 503 PGW PGB . 
N 6 PGW B 1 508 504 PGW PGB . 
O 6 PGW B 1 509 505 PGW PGB . 
P 6 PGW B 1 510 506 PGW PGB . 
Q 6 PGW B 1 511 507 PGW PGB . 
R 6 PGW B 1 512 508 PGW PGB . 
S 6 PGW B 1 513 509 PGW PGB . 
T 6 PGW B 1 514 510 PGW PGB . 
U 6 PGW B 1 515 511 PGW PGB . 
V 6 PGW B 1 516 512 PGW PGB . 
W 6 PGW B 1 517 513 PGW PGB . 
X 6 PGW B 1 518 514 PGW PGB . 
Y 6 PGW B 1 519 515 PGW PGB . 
Z 5 CS B 1 520 495 CS CS . 
AA 4 NAP G 1 1001 1001 NAP NAP . 
BA 5 CS H 1 501 496 CS CS . 
CA 5 CS H 1 502 498 CS CS . 
DA 5 CS H 1 503 499 CS CS . 
EA 6 PGW H 1 504 500 PGW PGB . 
FA 5 CS H 1 505 495 CS CS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 4 -21.981 39.437 73.928 1 28.27 ? PA NAP 1001 A 1 
HETATM 2 O O1A NAP . . . F 4 -22.353 38.849 75.203 1 31.31 ? O1A NAP 1001 A 1 
HETATM 3 O O2A NAP . . . F 4 -21.564 40.965 73.806 1 40.57 ? O2A NAP 1001 A 1 
HETATM 4 O O5B NAP . . . F 4 -21.498 38.416 72.741 1 31.86 ? O5B NAP 1001 A 1 
HETATM 5 C C5B NAP . . . F 4 -22.314 38.547 71.556 1 35.96 ? C5B NAP 1001 A 1 
HETATM 6 C C4B NAP . . . F 4 -21.878 37.452 70.55 1 39.32 ? C4B NAP 1001 A 1 
HETATM 7 O O4B NAP . . . F 4 -22.717 36.318 71.028 1 37.59 ? O4B NAP 1001 A 1 
HETATM 8 C C3B NAP . . . F 4 -22.366 37.643 69.107 1 38.83 ? C3B NAP 1001 A 1 
HETATM 9 O O3B NAP . . . F 4 -21.256 37.572 68.222 1 41.85 ? O3B NAP 1001 A 1 
HETATM 10 C C2B NAP . . . F 4 -23.458 36.61 68.77 1 39.8 ? C2B NAP 1001 A 1 
HETATM 11 O O2B NAP . . . F 4 -23.421 35.668 67.623 1 43.74 ? O2B NAP 1001 A 1 
HETATM 12 C C1B NAP . . . F 4 -23.833 35.991 70.099 1 36.4 ? C1B NAP 1001 A 1 
HETATM 13 N N9A NAP . . . F 4 -25.187 36.607 70.327 1 35.33 ? N9A NAP 1001 A 1 
HETATM 14 C C8A NAP . . . F 4 -25.49 37.887 70.733 1 36.06 ? C8A NAP 1001 A 1 
HETATM 15 N N7A NAP . . . F 4 -26.779 38.075 70.793 1 34.41 ? N7A NAP 1001 A 1 
HETATM 16 C C5A NAP . . . F 4 -27.411 36.95 70.433 1 35.01 ? C5A NAP 1001 A 1 
HETATM 17 C C6A NAP . . . F 4 -28.779 36.562 70.301 1 34.29 ? C6A NAP 1001 A 1 
HETATM 18 N N6A NAP . . . F 4 -29.797 37.453 70.571 1 35.1 ? N6A NAP 1001 A 1 
HETATM 19 N N1A NAP . . . F 4 -29.059 35.313 69.903 1 32.07 ? N1A NAP 1001 A 1 
HETATM 20 C C2A NAP . . . F 4 -28.086 34.433 69.628 1 33.86 ? C2A NAP 1001 A 1 
HETATM 21 N N3A NAP . . . F 4 -26.791 34.75 69.732 1 33.87 ? N3A NAP 1001 A 1 
HETATM 22 C C4A NAP . . . F 4 -26.405 35.978 70.128 1 34.85 ? C4A NAP 1001 A 1 
HETATM 23 O O3 NAP . . . F 4 -20.502 39.103 74.604 1 29.44 ? O3 NAP 1001 A 1 
HETATM 24 P PN NAP . . . F 4 -19.232 39.975 73.753 1 25.32 ? PN NAP 1001 A 1 
HETATM 25 O O1N NAP . . . F 4 -19.314 39.918 72.211 1 23.49 ? O1N NAP 1001 A 1 
HETATM 26 O O2N NAP . . . F 4 -17.882 39.366 74.148 1 28.24 ? O2N NAP 1001 A 1 
HETATM 27 O O5D NAP . . . F 4 -19.235 41.532 74.135 1 28.08 ? O5D NAP 1001 A 1 
HETATM 28 C C5D NAP . . . F 4 -18.231 42.041 73.298 1 35.67 ? C5D NAP 1001 A 1 
HETATM 29 C C4D NAP . . . F 4 -18.025 43.526 73.412 1 33.29 ? C4D NAP 1001 A 1 
HETATM 30 O O4D NAP . . . F 4 -17.598 43.938 74.739 1 33.98 ? O4D NAP 1001 A 1 
HETATM 31 C C3D NAP . . . F 4 -16.957 43.914 72.399 1 33.83 ? C3D NAP 1001 A 1 
HETATM 32 O O3D NAP . . . F 4 -17.532 44.653 71.379 1 39.49 ? O3D NAP 1001 A 1 
HETATM 33 C C2D NAP . . . F 4 -15.893 44.66 73.178 1 32.77 ? C2D NAP 1001 A 1 
HETATM 34 O O2D NAP . . . F 4 -15.78 45.994 72.691 1 36.5 ? O2D NAP 1001 A 1 
HETATM 35 C C1D NAP . . . F 4 -16.289 44.601 74.66 1 31.78 ? C1D NAP 1001 A 1 
HETATM 36 N N1N NAP . . . F 4 -15.21 43.819 75.331 1 31.84 ? N1N NAP 1001 A 1 
HETATM 37 C C2N NAP . . . F 4 -14.3 44.463 76.101 1 31.05 ? C2N NAP 1001 A 1 
HETATM 38 C C3N NAP . . . F 4 -13.236 43.72 76.722 1 30.66 ? C3N NAP 1001 A 1 
HETATM 39 C C7N NAP . . . F 4 -12.222 44.37 77.567 1 29.36 ? C7N NAP 1001 A 1 
HETATM 40 O O7N NAP . . . F 4 -12.261 45.554 77.776 1 29.91 ? O7N NAP 1001 A 1 
HETATM 41 N N7N NAP . . . F 4 -11.241 43.638 78.11 1 31.46 ? N7N NAP 1001 A 1 
HETATM 42 C C4N NAP . . . F 4 -13.166 42.316 76.506 1 30.88 ? C4N NAP 1001 A 1 
HETATM 43 C C5N NAP . . . F 4 -14.135 41.687 75.706 1 31.17 ? C5N NAP 1001 A 1 
HETATM 44 C C6N NAP . . . F 4 -15.142 42.464 75.133 1 31.46 ? C6N NAP 1001 A 1 
HETATM 45 P P2B NAP . . . F 4 -22.363 34.454 67.56 1 37.87 ? P2B NAP 1001 A 1 
HETATM 46 O O1X NAP . . . F 4 -22.476 33.554 68.735 1 45.06 ? O1X NAP 1001 A 1 
HETATM 47 O O2X NAP . . . F 4 -22.693 33.684 66.225 1 47.32 ? O2X NAP 1001 A 1 
HETATM 48 O O3X NAP . . . F 4 -20.851 34.97 67.396 1 44.79 ? O3X NAP 1001 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#