data_4JTC # _model_server_result.job_id OPDaa1GBdzifUYUoFgLkYA _model_server_result.datetime_utc '2024-11-28 19:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":510}' # _entry.id 4JTC # _exptl.entry_id 4JTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JTC _cell.length_a 145.434 _cell.length_b 145.434 _cell.length_c 285.591 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? nonameric 9 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1,2,3,4 C,D,AA,BA,CA,DA,EA,FA 2 2,3,4 C,D,E,AA,BA,CA,DA,EA,FA 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 145.434 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 72.717 72.717 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -72.717 72.717 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 7 Y CYS 7 1_555 E SG CYS 28 Y CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 E SG CYS 13 Y CYS 13 1_555 E SG CYS 33 Y CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 17 Y CYS 17 1_555 E SG CYS 33 Y CYS 33 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? disulf ? disulf4 E SG CYS 17 Y CYS 17 1_555 E SG CYS 35 Y CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 E C PCA 1 Y PCA 1 1_555 E N PHE 2 Y PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B O GLY 391 B GLY 372 1_555 G CS CS . B CS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.487 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 331 n n CAD HAD PGW sing 332 n n CAD HADA PGW sing 333 n n OAE CAD PGW sing 334 n n OAE HOAE PGW sing 335 n n OAF C05 PGW sing 336 n n OAF HOAF PGW sing 337 n n P O13 PGW sing 338 n n P O11 PGW sing 339 n n C01 O03 PGW sing 340 n n C01 C02 PGW sing 341 n n C01 H01 PGW sing 342 n n C01 H01A PGW sing 343 n n C1 C2 PGW sing 344 n n O01 C1 PGW sing 345 n n C02 O01 PGW sing 346 n n C02 H02 PGW sing 347 n n C2 C3 PGW sing 348 n n C2 H2 PGW sing 349 n n C2 H2A PGW sing 350 n n O02 C1 PGW doub 351 n n C03 C02 PGW sing 352 n n C03 H03 PGW sing 353 n n C03 H03A PGW sing 354 n n C3 C4 PGW sing 355 n n C3 H3 PGW sing 356 n n C3 H3A PGW sing 357 n n C04 C05 PGW sing 358 n n C04 O12 PGW sing 359 n n C04 H04 PGW sing 360 n n C04 H04A PGW sing 361 n n C4 C5 PGW sing 362 n n C4 H4 PGW sing 363 n n C4 H4A PGW sing 364 n n O04 C19 PGW doub 365 n n C05 H05 PGW sing 366 n n C5 C6 PGW sing 367 n n C5 H5 PGW sing 368 n n C5 H5A PGW sing 369 n n C06 C07 PGW sing 370 n n C06 H06 PGW sing 371 n n C06 H06A PGW sing 372 n n C6 C7 PGW sing 373 n n C6 H6 PGW sing 374 n n C6 H6A PGW sing 375 n n C07 H07 PGW sing 376 n n C07 H07A PGW sing 377 n n C7 C8 PGW sing 378 n n C7 H7 PGW sing 379 n n C7 H7A PGW sing 380 n n C08 C07 PGW sing 381 n n C08 H08 PGW sing 382 n n C08 H08A PGW sing 383 n n C8 C9 PGW sing 384 n n C8 H8 PGW sing 385 n n C8 H8A PGW sing 386 n n C09 C08 PGW sing 387 n n C09 C11 PGW sing 388 n n C09 H09 PGW sing 389 n n C09 H09A PGW sing 390 n n C9 C10 PGW doub 391 z n C10 C06 PGW sing 392 n n C11 H11 PGW sing 393 n n C11 H11A PGW sing 394 n n O11 C03 PGW sing 395 n n C12 C11 PGW sing 396 n n C12 H12 PGW sing 397 n n C12 H12A PGW sing 398 n n O12 P PGW sing 399 n n C13 C12 PGW sing 400 n n C13 C14 PGW sing 401 n n C13 H13 PGW sing 402 n n C13 H13A PGW sing 403 n n O13 HO13 PGW sing 404 n n C14 H14 PGW sing 405 n n C14 H14A PGW sing 406 n n C14 H14B PGW sing 407 n n O14 P PGW doub 408 n n C15 C16 PGW sing 409 n n C15 H15 PGW sing 410 n n C15 H15A PGW sing 411 n n C16 H16 PGW sing 412 n n C16 H16A PGW sing 413 n n C17 C16 PGW sing 414 n n C17 C18 PGW sing 415 n n C17 H17 PGW sing 416 n n C17 H17A PGW sing 417 n n C18 C28 PGW sing 418 n n C18 H18 PGW sing 419 n n C18 H18A PGW sing 420 n n C19 O03 PGW sing 421 n n C19 C20 PGW sing 422 n n C20 C21 PGW sing 423 n n C20 H20 PGW sing 424 n n C20 H20A PGW sing 425 n n C21 C22 PGW sing 426 n n C21 H21 PGW sing 427 n n C21 H21A PGW sing 428 n n C22 C23 PGW sing 429 n n C22 H22 PGW sing 430 n n C22 H22A PGW sing 431 n n C23 C24 PGW sing 432 n n C23 H23 PGW sing 433 n n C23 H23A PGW sing 434 n n C24 C25 PGW sing 435 n n C24 H24 PGW sing 436 n n C24 H24A PGW sing 437 n n C25 C26 PGW sing 438 n n C25 H25 PGW sing 439 n n C25 H25A PGW sing 440 n n C26 C27 PGW sing 441 n n C26 H26 PGW sing 442 n n C26 H26A PGW sing 443 n n C27 C15 PGW sing 444 n n C27 H27 PGW sing 445 n n C27 H27A PGW sing 446 n n C28 H28 PGW sing 447 n n C28 H28A PGW sing 448 n n C29 H29 PGW sing 449 n n C29 H29A PGW sing 450 n n C29 H29B PGW sing 451 n n C30 C28 PGW sing 452 n n C30 C29 PGW sing 453 n n C30 H30 PGW sing 454 n n C30 H30A PGW sing 455 n n C9 H9 PGW sing 456 n n C10 H10 PGW sing 457 n n # _atom_sites.entry_id 4JTC _atom_sites.fract_transf_matrix[1][1] 0.006876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAP A 1 1001 1001 NAP NAP . G 5 CS B 1 501 496 CS CS . H 5 CS B 1 502 498 CS CS . I 5 CS B 1 503 499 CS CS . J 6 PGW B 1 504 500 PGW PGB . K 6 PGW B 1 505 501 PGW PGB . L 6 PGW B 1 506 502 PGW PGB . M 6 PGW B 1 507 503 PGW PGB . N 6 PGW B 1 508 504 PGW PGB . O 6 PGW B 1 509 505 PGW PGB . P 6 PGW B 1 510 506 PGW PGB . Q 6 PGW B 1 511 507 PGW PGB . R 6 PGW B 1 512 508 PGW PGB . S 6 PGW B 1 513 509 PGW PGB . T 6 PGW B 1 514 510 PGW PGB . U 6 PGW B 1 515 511 PGW PGB . V 6 PGW B 1 516 512 PGW PGB . W 6 PGW B 1 517 513 PGW PGB . X 6 PGW B 1 518 514 PGW PGB . Y 6 PGW B 1 519 515 PGW PGB . Z 5 CS B 1 520 495 CS CS . AA 4 NAP G 1 1001 1001 NAP NAP . BA 5 CS H 1 501 496 CS CS . CA 5 CS H 1 502 498 CS CS . DA 5 CS H 1 503 499 CS CS . EA 6 PGW H 1 504 500 PGW PGB . FA 5 CS H 1 505 495 CS CS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGW . . . P 6 -11.193 61.821 162.919 1 108.37 ? C1 PGW 510 B 1 HETATM 2 C C2 PGW . . . P 6 -10.164 61.276 163.912 1 108.69 ? C2 PGW 510 B 1 HETATM 3 C C3 PGW . . . P 6 -9.71 59.869 163.519 1 109.35 ? C3 PGW 510 B 1 HETATM 4 C C4 PGW . . . P 6 -8.662 59.343 164.503 1 109.58 ? C4 PGW 510 B 1 HETATM 5 C C5 PGW . . . P 6 -8.163 57.953 164.101 1 108.67 ? C5 PGW 510 B 1 HETATM 6 C C6 PGW . . . P 6 -7.076 57.47 165.062 1 107.75 ? C6 PGW 510 B 1 HETATM 7 C C7 PGW . . . P 6 -6.531 56.104 164.642 1 107.23 ? C7 PGW 510 B 1 HETATM 8 C C8 PGW . . . P 6 -5.421 55.648 165.592 1 106.88 ? C8 PGW 510 B 1 HETATM 9 C C9 PGW . . . P 6 -4.859 54.289 165.17 1 106.45 ? C9 PGW 510 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #