data_4JTC
#
_model_server_result.job_id            1efZJ_zzdthT_DpNOtbVfw 
_model_server_result.datetime_utc      '2024-12-01 09:03:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":514}' 
#
_entry.id    4JTC 
#
_exptl.entry_id    4JTC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JTC 
_cell.length_a            145.434 
_cell.length_b            145.434 
_cell.length_c            285.591 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? octameric 8 author_defined_assembly 1 
? nonameric 9 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1,2,3,4 
C,D,AA,BA,CA,DA,EA,FA 2 2,3,4 
C,D,E,AA,BA,CA,DA,EA,FA 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 145.434 0 
3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 72.717 72.717 0 
4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -72.717 72.717 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 7 Y CYS 7 1_555 E SG CYS 28 Y CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 E SG CYS 13 Y CYS 13 1_555 E SG CYS 33 Y CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 E SG CYS 17 Y CYS 17 1_555 E SG CYS 33 Y CYS 33 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? 
disulf ? disulf4 E SG CYS 17 Y CYS 17 1_555 E SG CYS 35 Y CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 E C PCA 1 Y PCA 1 1_555 E N PHE 2 Y PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 B O GLY 391 B GLY 372 1_555 G CS CS . B CS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.487 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 331 n n 
CAD HAD PGW sing 332 n n 
CAD HADA PGW sing 333 n n 
OAE CAD PGW sing 334 n n 
OAE HOAE PGW sing 335 n n 
OAF C05 PGW sing 336 n n 
OAF HOAF PGW sing 337 n n 
P O13 PGW sing 338 n n 
P O11 PGW sing 339 n n 
C01 O03 PGW sing 340 n n 
C01 C02 PGW sing 341 n n 
C01 H01 PGW sing 342 n n 
C01 H01A PGW sing 343 n n 
C1 C2 PGW sing 344 n n 
O01 C1 PGW sing 345 n n 
C02 O01 PGW sing 346 n n 
C02 H02 PGW sing 347 n n 
C2 C3 PGW sing 348 n n 
C2 H2 PGW sing 349 n n 
C2 H2A PGW sing 350 n n 
O02 C1 PGW doub 351 n n 
C03 C02 PGW sing 352 n n 
C03 H03 PGW sing 353 n n 
C03 H03A PGW sing 354 n n 
C3 C4 PGW sing 355 n n 
C3 H3 PGW sing 356 n n 
C3 H3A PGW sing 357 n n 
C04 C05 PGW sing 358 n n 
C04 O12 PGW sing 359 n n 
C04 H04 PGW sing 360 n n 
C04 H04A PGW sing 361 n n 
C4 C5 PGW sing 362 n n 
C4 H4 PGW sing 363 n n 
C4 H4A PGW sing 364 n n 
O04 C19 PGW doub 365 n n 
C05 H05 PGW sing 366 n n 
C5 C6 PGW sing 367 n n 
C5 H5 PGW sing 368 n n 
C5 H5A PGW sing 369 n n 
C06 C07 PGW sing 370 n n 
C06 H06 PGW sing 371 n n 
C06 H06A PGW sing 372 n n 
C6 C7 PGW sing 373 n n 
C6 H6 PGW sing 374 n n 
C6 H6A PGW sing 375 n n 
C07 H07 PGW sing 376 n n 
C07 H07A PGW sing 377 n n 
C7 C8 PGW sing 378 n n 
C7 H7 PGW sing 379 n n 
C7 H7A PGW sing 380 n n 
C08 C07 PGW sing 381 n n 
C08 H08 PGW sing 382 n n 
C08 H08A PGW sing 383 n n 
C8 C9 PGW sing 384 n n 
C8 H8 PGW sing 385 n n 
C8 H8A PGW sing 386 n n 
C09 C08 PGW sing 387 n n 
C09 C11 PGW sing 388 n n 
C09 H09 PGW sing 389 n n 
C09 H09A PGW sing 390 n n 
C9 C10 PGW doub 391 z n 
C10 C06 PGW sing 392 n n 
C11 H11 PGW sing 393 n n 
C11 H11A PGW sing 394 n n 
O11 C03 PGW sing 395 n n 
C12 C11 PGW sing 396 n n 
C12 H12 PGW sing 397 n n 
C12 H12A PGW sing 398 n n 
O12 P PGW sing 399 n n 
C13 C12 PGW sing 400 n n 
C13 C14 PGW sing 401 n n 
C13 H13 PGW sing 402 n n 
C13 H13A PGW sing 403 n n 
O13 HO13 PGW sing 404 n n 
C14 H14 PGW sing 405 n n 
C14 H14A PGW sing 406 n n 
C14 H14B PGW sing 407 n n 
O14 P PGW doub 408 n n 
C15 C16 PGW sing 409 n n 
C15 H15 PGW sing 410 n n 
C15 H15A PGW sing 411 n n 
C16 H16 PGW sing 412 n n 
C16 H16A PGW sing 413 n n 
C17 C16 PGW sing 414 n n 
C17 C18 PGW sing 415 n n 
C17 H17 PGW sing 416 n n 
C17 H17A PGW sing 417 n n 
C18 C28 PGW sing 418 n n 
C18 H18 PGW sing 419 n n 
C18 H18A PGW sing 420 n n 
C19 O03 PGW sing 421 n n 
C19 C20 PGW sing 422 n n 
C20 C21 PGW sing 423 n n 
C20 H20 PGW sing 424 n n 
C20 H20A PGW sing 425 n n 
C21 C22 PGW sing 426 n n 
C21 H21 PGW sing 427 n n 
C21 H21A PGW sing 428 n n 
C22 C23 PGW sing 429 n n 
C22 H22 PGW sing 430 n n 
C22 H22A PGW sing 431 n n 
C23 C24 PGW sing 432 n n 
C23 H23 PGW sing 433 n n 
C23 H23A PGW sing 434 n n 
C24 C25 PGW sing 435 n n 
C24 H24 PGW sing 436 n n 
C24 H24A PGW sing 437 n n 
C25 C26 PGW sing 438 n n 
C25 H25 PGW sing 439 n n 
C25 H25A PGW sing 440 n n 
C26 C27 PGW sing 441 n n 
C26 H26 PGW sing 442 n n 
C26 H26A PGW sing 443 n n 
C27 C15 PGW sing 444 n n 
C27 H27 PGW sing 445 n n 
C27 H27A PGW sing 446 n n 
C28 H28 PGW sing 447 n n 
C28 H28A PGW sing 448 n n 
C29 H29 PGW sing 449 n n 
C29 H29A PGW sing 450 n n 
C29 H29B PGW sing 451 n n 
C30 C28 PGW sing 452 n n 
C30 C29 PGW sing 453 n n 
C30 H30 PGW sing 454 n n 
C30 H30A PGW sing 455 n n 
C9 H9 PGW sing 456 n n 
C10 H10 PGW sing 457 n n 
#
_atom_sites.entry_id                     4JTC 
_atom_sites.fract_transf_matrix[1][1]    0.006876 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006876 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 NAP A 1 1001 1001 NAP NAP . 
G 5 CS B 1 501 496 CS CS . 
H 5 CS B 1 502 498 CS CS . 
I 5 CS B 1 503 499 CS CS . 
J 6 PGW B 1 504 500 PGW PGB . 
K 6 PGW B 1 505 501 PGW PGB . 
L 6 PGW B 1 506 502 PGW PGB . 
M 6 PGW B 1 507 503 PGW PGB . 
N 6 PGW B 1 508 504 PGW PGB . 
O 6 PGW B 1 509 505 PGW PGB . 
P 6 PGW B 1 510 506 PGW PGB . 
Q 6 PGW B 1 511 507 PGW PGB . 
R 6 PGW B 1 512 508 PGW PGB . 
S 6 PGW B 1 513 509 PGW PGB . 
T 6 PGW B 1 514 510 PGW PGB . 
U 6 PGW B 1 515 511 PGW PGB . 
V 6 PGW B 1 516 512 PGW PGB . 
W 6 PGW B 1 517 513 PGW PGB . 
X 6 PGW B 1 518 514 PGW PGB . 
Y 6 PGW B 1 519 515 PGW PGB . 
Z 5 CS B 1 520 495 CS CS . 
AA 4 NAP G 1 1001 1001 NAP NAP . 
BA 5 CS H 1 501 496 CS CS . 
CA 5 CS H 1 502 498 CS CS . 
DA 5 CS H 1 503 499 CS CS . 
EA 6 PGW H 1 504 500 PGW PGB . 
FA 5 CS H 1 505 495 CS CS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGW . . . T 6 -23.532 67.548 156.492 1 124.37 ? P PGW 514 B 1 
HETATM 2 C C01 PGW . . . T 6 -25.047 65.753 160.395 1 120.38 ? C01 PGW 514 B 1 
HETATM 3 C C1 PGW . . . T 6 -23.663 69.084 159.961 1 120.89 ? C1 PGW 514 B 1 
HETATM 4 O O01 PGW . . . T 6 -24.13 67.911 160.467 1 121.7 ? O01 PGW 514 B 1 
HETATM 5 C C02 PGW . . . T 6 -24.501 66.881 159.534 1 121.53 ? C02 PGW 514 B 1 
HETATM 6 C C2 PGW . . . T 6 -23.89 70.351 160.789 1 119.9 ? C2 PGW 514 B 1 
HETATM 7 O O02 PGW . . . T 6 -23.061 69.128 158.889 1 121.42 ? O02 PGW 514 B 1 
HETATM 8 C C03 PGW . . . T 6 -23.298 66.286 158.796 1 122.05 ? C03 PGW 514 B 1 
HETATM 9 C C3 PGW . . . T 6 -22.758 70.611 161.785 1 119.34 ? C3 PGW 514 B 1 
HETATM 10 O O03 PGW . . . T 6 -25.954 66.309 161.358 1 117.85 ? O03 PGW 514 B 1 
HETATM 11 C C4 PGW . . . T 6 -23.071 71.848 162.63 1 119.06 ? C4 PGW 514 B 1 
HETATM 12 O O04 PGW . . . T 6 -26.559 64.18 161.717 1 116.7 ? O04 PGW 514 B 1 
HETATM 13 C C5 PGW . . . T 6 -21.972 72.113 163.66 1 118.71 ? C5 PGW 514 B 1 
HETATM 14 O O11 PGW . . . T 6 -22.718 67.165 157.828 1 123.41 ? O11 PGW 514 B 1 
HETATM 15 O O12 PGW . . . T 6 -24.782 68.447 156.963 1 124.81 ? O12 PGW 514 B 1 
HETATM 16 O O13 PGW . . . T 6 -24.158 66.167 155.952 1 123.46 ? O13 PGW 514 B 1 
HETATM 17 O O14 PGW . . . T 6 -22.688 68.226 155.483 1 123.81 ? O14 PGW 514 B 1 
HETATM 18 C C19 PGW . . . T 6 -26.455 65.325 162.153 1 115.94 ? C19 PGW 514 B 1 
HETATM 19 C C20 PGW . . . T 6 -26.882 65.662 163.583 1 114.05 ? C20 PGW 514 B 1 
HETATM 20 C C21 PGW . . . T 6 -26.017 66.796 164.137 1 111.68 ? C21 PGW 514 B 1 
HETATM 21 C C22 PGW . . . T 6 -26.356 67.1 165.597 1 110.64 ? C22 PGW 514 B 1 
HETATM 22 C C23 PGW . . . T 6 -25.445 68.199 166.147 1 109.94 ? C23 PGW 514 B 1 
HETATM 23 C C24 PGW . . . T 6 -25.755 68.488 167.618 1 109.65 ? C24 PGW 514 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           23 
#