data_4JTC # _model_server_result.job_id D1cWPWZXitoAzaCcqI9ZeA _model_server_result.datetime_utc '2024-10-18 22:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":516}' # _entry.id 4JTC # _exptl.entry_id 4JTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JTC _cell.length_a 145.434 _cell.length_b 145.434 _cell.length_c 285.591 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? nonameric 9 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1,2,3,4 C,D,AA,BA,CA,DA,EA,FA 2 2,3,4 C,D,E,AA,BA,CA,DA,EA,FA 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 145.434 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 72.717 72.717 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -72.717 72.717 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 7 Y CYS 7 1_555 E SG CYS 28 Y CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 E SG CYS 13 Y CYS 13 1_555 E SG CYS 33 Y CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 17 Y CYS 17 1_555 E SG CYS 35 Y CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 17 Y CYS 17 1_555 E SG CYS 33 Y CYS 33 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? covale ? covale1 E C PCA 1 Y PCA 1 1_555 E N PHE 2 Y PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B O GLY 391 B GLY 372 1_555 G CS CS . B CS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.487 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # _atom_sites.entry_id 4JTC _atom_sites.fract_transf_matrix[1][1] 0.006876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAP A 1 1001 1001 NAP NAP . G 5 CS B 1 501 496 CS CS . H 5 CS B 1 502 498 CS CS . I 5 CS B 1 503 499 CS CS . J 6 PGW B 1 504 500 PGW PGB . K 6 PGW B 1 505 501 PGW PGB . L 6 PGW B 1 506 502 PGW PGB . M 6 PGW B 1 507 503 PGW PGB . N 6 PGW B 1 508 504 PGW PGB . O 6 PGW B 1 509 505 PGW PGB . P 6 PGW B 1 510 506 PGW PGB . Q 6 PGW B 1 511 507 PGW PGB . R 6 PGW B 1 512 508 PGW PGB . S 6 PGW B 1 513 509 PGW PGB . T 6 PGW B 1 514 510 PGW PGB . U 6 PGW B 1 515 511 PGW PGB . V 6 PGW B 1 516 512 PGW PGB . W 6 PGW B 1 517 513 PGW PGB . X 6 PGW B 1 518 514 PGW PGB . Y 6 PGW B 1 519 515 PGW PGB . Z 5 CS B 1 520 495 CS CS . AA 4 NAP G 1 1001 1001 NAP NAP . BA 5 CS H 1 501 496 CS CS . CA 5 CS H 1 502 498 CS CS . DA 5 CS H 1 503 499 CS CS . EA 6 PGW H 1 504 500 PGW PGB . FA 5 CS H 1 505 495 CS CS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . V 6 -20.261 61.49 145.97 1 141.05 ? CAD PGW 516 B 1 HETATM 2 O OAE PGW . . . V 6 -20.62 61.101 144.642 1 140.78 ? OAE PGW 516 B 1 HETATM 3 O OAF PGW . . . V 6 -18.813 59.563 146.176 1 141.31 ? OAF PGW 516 B 1 HETATM 4 P P PGW . . . V 6 -22.001 57.01 147.701 1 140.19 ? P PGW 516 B 1 HETATM 5 C C01 PGW . . . V 6 -19.167 54.241 149.878 1 128.88 ? C01 PGW 516 B 1 HETATM 6 C C1 PGW . . . V 6 -21.292 54.881 152.677 1 126.05 ? C1 PGW 516 B 1 HETATM 7 O O01 PGW . . . V 6 -20.248 54.61 151.849 1 128.09 ? O01 PGW 516 B 1 HETATM 8 C C02 PGW . . . V 6 -20.543 54.548 150.445 1 130.08 ? C02 PGW 516 B 1 HETATM 9 C C2 PGW . . . V 6 -21.17 54.396 154.123 1 124.11 ? C2 PGW 516 B 1 HETATM 10 O O02 PGW . . . V 6 -22.282 55.494 152.279 1 125.98 ? O02 PGW 516 B 1 HETATM 11 C C03 PGW . . . V 6 -21.052 55.888 149.909 1 133.17 ? C03 PGW 516 B 1 HETATM 12 C C3 PGW . . . V 6 -20.47 55.427 155.008 1 121.46 ? C3 PGW 516 B 1 HETATM 13 O O03 PGW . . . V 6 -18.756 53.088 150.627 1 127.01 ? O03 PGW 516 B 1 HETATM 14 C C04 PGW . . . V 6 -21.127 59.318 146.827 1 140.76 ? C04 PGW 516 B 1 HETATM 15 C C4 PGW . . . V 6 -20.208 54.855 156.403 1 118.49 ? C4 PGW 516 B 1 HETATM 16 O O04 PGW . . . V 6 -16.739 53.35 149.647 1 125.35 ? O04 PGW 516 B 1 HETATM 17 C C05 PGW . . . V 6 -19.911 60.245 146.787 1 141.01 ? C05 PGW 516 B 1 HETATM 18 C C5 PGW . . . V 6 -19.396 55.839 157.247 1 115.8 ? C5 PGW 516 B 1 HETATM 19 C C6 PGW . . . V 6 -19.033 55.25 158.611 1 112.77 ? C6 PGW 516 B 1 HETATM 20 C C7 PGW . . . V 6 -18.144 56.228 159.382 1 111.28 ? C7 PGW 516 B 1 HETATM 21 C C8 PGW . . . V 6 -17.68 55.641 160.716 1 109.27 ? C8 PGW 516 B 1 HETATM 22 C C9 PGW . . . V 6 -16.736 56.615 161.425 1 108.45 ? C9 PGW 516 B 1 HETATM 23 C C10 PGW . . . V 6 -16.101 56.393 162.652 1 107.94 ? C10 PGW 516 B 1 HETATM 24 O O11 PGW . . . V 6 -21.373 55.773 148.52 1 137.72 ? O11 PGW 516 B 1 HETATM 25 O O12 PGW . . . V 6 -20.846 58.122 147.559 1 140.41 ? O12 PGW 516 B 1 HETATM 26 O O13 PGW . . . V 6 -23.113 57.657 148.669 1 140.06 ? O13 PGW 516 B 1 HETATM 27 O O14 PGW . . . V 6 -22.555 56.603 146.389 1 140.07 ? O14 PGW 516 B 1 HETATM 28 C C19 PGW . . . V 6 -17.425 52.828 150.525 1 125.67 ? C19 PGW 516 B 1 HETATM 29 C C20 PGW . . . V 6 -16.824 51.864 151.549 1 124.19 ? C20 PGW 516 B 1 HETATM 30 C C21 PGW . . . V 6 -16.393 52.667 152.779 1 122 ? C21 PGW 516 B 1 HETATM 31 C C22 PGW . . . V 6 -15.923 51.775 153.93 1 120.26 ? C22 PGW 516 B 1 HETATM 32 C C23 PGW . . . V 6 -15.611 52.637 155.155 1 118.69 ? C23 PGW 516 B 1 HETATM 33 C C24 PGW . . . V 6 -15.192 51.792 156.359 1 116.84 ? C24 PGW 516 B 1 HETATM 34 C C25 PGW . . . V 6 -14.91 52.687 157.568 1 115.04 ? C25 PGW 516 B 1 HETATM 35 C C26 PGW . . . V 6 -14.494 51.863 158.788 1 113.68 ? C26 PGW 516 B 1 HETATM 36 C C27 PGW . . . V 6 -14.211 52.769 159.988 1 112.51 ? C27 PGW 516 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 36 #