data_4JTP # _model_server_result.job_id nBkn4yWa3y3gV0RKCmYKEA _model_server_result.datetime_utc '2024-11-23 21:48:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jtp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4JTP # _exptl.entry_id 4JTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JTP _cell.length_a 130.38 _cell.length_b 130.38 _cell.length_c 37.226 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.45 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 244 n n C1 O1 NAG sing 245 n n C1 O5 NAG sing 246 n n C1 H1 NAG sing 247 n n C2 C3 NAG sing 248 n n C2 N2 NAG sing 249 n n C2 H2 NAG sing 250 n n C3 C4 NAG sing 251 n n C3 O3 NAG sing 252 n n C3 H3 NAG sing 253 n n C4 C5 NAG sing 254 n n C4 O4 NAG sing 255 n n C4 H4 NAG sing 256 n n C5 C6 NAG sing 257 n n C5 O5 NAG sing 258 n n C5 H5 NAG sing 259 n n C6 O6 NAG sing 260 n n C6 H61 NAG sing 261 n n C6 H62 NAG sing 262 n n C7 C8 NAG sing 263 n n C7 N2 NAG sing 264 n n C7 O7 NAG doub 265 n n C8 H81 NAG sing 266 n n C8 H82 NAG sing 267 n n C8 H83 NAG sing 268 n n N2 HN2 NAG sing 269 n n O1 HO1 NAG sing 270 n n O3 HO3 NAG sing 271 n n O4 HO4 NAG sing 272 n n O6 HO6 NAG sing 273 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JTP _atom_sites.fract_transf_matrix[1][1] 0.00767 _atom_sites.fract_transf_matrix[1][2] 0.004428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 801 NAG NAG . C 3 ASC A 1 802 1728 ASC ASC . D 4 HOH A 1 901 1 HOH HOH . D 4 HOH A 2 902 321 HOH HOH . D 4 HOH A 3 903 2 HOH HOH . D 4 HOH A 4 904 422 HOH HOH . D 4 HOH A 5 905 3 HOH HOH . D 4 HOH A 6 906 323 HOH HOH . D 4 HOH A 7 907 4 HOH HOH . D 4 HOH A 8 908 5 HOH HOH . D 4 HOH A 9 909 6 HOH HOH . D 4 HOH A 10 910 7 HOH HOH . D 4 HOH A 11 911 8 HOH HOH . D 4 HOH A 12 912 9 HOH HOH . D 4 HOH A 13 913 10 HOH HOH . D 4 HOH A 14 914 11 HOH HOH . D 4 HOH A 15 915 12 HOH HOH . D 4 HOH A 16 916 13 HOH HOH . D 4 HOH A 17 917 313 HOH HOH . D 4 HOH A 18 918 14 HOH HOH . D 4 HOH A 19 919 15 HOH HOH . D 4 HOH A 20 920 16 HOH HOH . D 4 HOH A 21 921 17 HOH HOH . D 4 HOH A 22 922 317 HOH HOH . D 4 HOH A 23 923 18 HOH HOH . D 4 HOH A 24 924 19 HOH HOH . D 4 HOH A 25 925 20 HOH HOH . D 4 HOH A 26 926 21 HOH HOH . D 4 HOH A 27 927 22 HOH HOH . D 4 HOH A 28 928 322 HOH HOH . D 4 HOH A 29 929 23 HOH HOH . D 4 HOH A 30 930 24 HOH HOH . D 4 HOH A 31 931 25 HOH HOH . D 4 HOH A 32 932 26 HOH HOH . D 4 HOH A 33 933 27 HOH HOH . D 4 HOH A 34 934 28 HOH HOH . D 4 HOH A 35 935 29 HOH HOH . D 4 HOH A 36 936 30 HOH HOH . D 4 HOH A 37 937 31 HOH HOH . D 4 HOH A 38 938 32 HOH HOH . D 4 HOH A 39 939 33 HOH HOH . D 4 HOH A 40 940 133 HOH HOH . D 4 HOH A 41 941 34 HOH HOH . D 4 HOH A 42 942 35 HOH HOH . D 4 HOH A 43 943 36 HOH HOH . D 4 HOH A 44 944 37 HOH HOH . D 4 HOH A 45 945 38 HOH HOH . D 4 HOH A 46 946 39 HOH HOH . D 4 HOH A 47 947 40 HOH HOH . D 4 HOH A 48 948 41 HOH HOH . D 4 HOH A 49 949 42 HOH HOH . D 4 HOH A 50 950 43 HOH HOH . D 4 HOH A 51 951 44 HOH HOH . D 4 HOH A 52 952 45 HOH HOH . D 4 HOH A 53 953 46 HOH HOH . D 4 HOH A 54 954 47 HOH HOH . D 4 HOH A 55 955 48 HOH HOH . D 4 HOH A 56 956 49 HOH HOH . D 4 HOH A 57 957 50 HOH HOH . D 4 HOH A 58 958 51 HOH HOH . D 4 HOH A 59 959 151 HOH HOH . D 4 HOH A 60 960 52 HOH HOH . D 4 HOH A 61 961 53 HOH HOH . D 4 HOH A 62 962 54 HOH HOH . D 4 HOH A 63 963 55 HOH HOH . D 4 HOH A 64 964 56 HOH HOH . D 4 HOH A 65 965 57 HOH HOH . D 4 HOH A 66 966 58 HOH HOH . D 4 HOH A 67 967 59 HOH HOH . D 4 HOH A 68 968 60 HOH HOH . D 4 HOH A 69 969 160 HOH HOH . D 4 HOH A 70 970 61 HOH HOH . D 4 HOH A 71 971 62 HOH HOH . D 4 HOH A 72 972 63 HOH HOH . D 4 HOH A 73 973 64 HOH HOH . D 4 HOH A 74 974 65 HOH HOH . D 4 HOH A 75 975 66 HOH HOH . D 4 HOH A 76 976 67 HOH HOH . D 4 HOH A 77 977 68 HOH HOH . D 4 HOH A 78 978 69 HOH HOH . D 4 HOH A 79 979 70 HOH HOH . D 4 HOH A 80 980 170 HOH HOH . D 4 HOH A 81 981 72 HOH HOH . D 4 HOH A 82 982 73 HOH HOH . D 4 HOH A 83 983 74 HOH HOH . D 4 HOH A 84 984 174 HOH HOH . D 4 HOH A 85 985 75 HOH HOH . D 4 HOH A 86 986 76 HOH HOH . D 4 HOH A 87 987 77 HOH HOH . D 4 HOH A 88 988 78 HOH HOH . D 4 HOH A 89 989 79 HOH HOH . D 4 HOH A 90 990 80 HOH HOH . D 4 HOH A 91 991 81 HOH HOH . D 4 HOH A 92 992 82 HOH HOH . D 4 HOH A 93 993 182 HOH HOH . D 4 HOH A 94 994 83 HOH HOH . D 4 HOH A 95 995 183 HOH HOH . D 4 HOH A 96 996 84 HOH HOH . D 4 HOH A 97 997 85 HOH HOH . D 4 HOH A 98 998 86 HOH HOH . D 4 HOH A 99 999 87 HOH HOH . D 4 HOH A 100 1000 88 HOH HOH . D 4 HOH A 101 1001 89 HOH HOH . D 4 HOH A 102 1002 90 HOH HOH . D 4 HOH A 103 1003 91 HOH HOH . D 4 HOH A 104 1004 92 HOH HOH . D 4 HOH A 105 1005 93 HOH HOH . D 4 HOH A 106 1006 94 HOH HOH . D 4 HOH A 107 1007 95 HOH HOH . D 4 HOH A 108 1008 96 HOH HOH . D 4 HOH A 109 1009 97 HOH HOH . D 4 HOH A 110 1010 98 HOH HOH . D 4 HOH A 111 1011 99 HOH HOH . D 4 HOH A 112 1012 100 HOH HOH . D 4 HOH A 113 1013 101 HOH HOH . D 4 HOH A 114 1014 102 HOH HOH . D 4 HOH A 115 1015 103 HOH HOH . D 4 HOH A 116 1016 104 HOH HOH . D 4 HOH A 117 1017 105 HOH HOH . D 4 HOH A 118 1018 106 HOH HOH . D 4 HOH A 119 1019 107 HOH HOH . D 4 HOH A 120 1020 108 HOH HOH . D 4 HOH A 121 1021 110 HOH HOH . D 4 HOH A 122 1022 111 HOH HOH . D 4 HOH A 123 1023 112 HOH HOH . D 4 HOH A 124 1024 113 HOH HOH . D 4 HOH A 125 1025 114 HOH HOH . D 4 HOH A 126 1026 115 HOH HOH . D 4 HOH A 127 1027 116 HOH HOH . D 4 HOH A 128 1028 117 HOH HOH . D 4 HOH A 129 1029 118 HOH HOH . D 4 HOH A 130 1030 119 HOH HOH . D 4 HOH A 131 1031 120 HOH HOH . D 4 HOH A 132 1032 121 HOH HOH . D 4 HOH A 133 1033 122 HOH HOH . D 4 HOH A 134 1034 123 HOH HOH . D 4 HOH A 135 1035 124 HOH HOH . D 4 HOH A 136 1036 1 HOH HOH . D 4 HOH A 137 1037 2 HOH HOH . D 4 HOH A 138 1038 3 HOH HOH . D 4 HOH A 139 1039 4 HOH HOH . D 4 HOH A 140 1040 5 HOH HOH . D 4 HOH A 141 1041 6 HOH HOH . D 4 HOH A 142 1042 7 HOH HOH . D 4 HOH A 143 1043 8 HOH HOH . D 4 HOH A 144 1044 9 HOH HOH . D 4 HOH A 145 1045 10 HOH HOH . D 4 HOH A 146 1046 11 HOH HOH . D 4 HOH A 147 1047 12 HOH HOH . D 4 HOH A 148 1048 13 HOH HOH . D 4 HOH A 149 1049 14 HOH HOH . D 4 HOH A 150 1050 15 HOH HOH . D 4 HOH A 151 1051 16 HOH HOH . D 4 HOH A 152 1052 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -41.819 -12.782 4.556 1 50.57 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . B 2 -42.383 -12.566 5.96 1 58.06 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . B 2 -43.047 -11.21 6.209 1 59.62 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . B 2 -42.242 -10.086 5.579 1 56.12 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . B 2 -41.928 -10.503 4.102 1 53.06 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . B 2 -41.087 -9.52 3.314 1 51.39 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . B 2 -43.104 -14.802 6.69 1 69.68 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . B 2 -44.195 -15.838 6.69 1 69.26 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . B 2 -43.36 -13.643 6.07 1 64.1 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . B 2 -43.23 -11.014 7.6 1 63.62 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . B 2 -42.976 -8.867 5.733 1 54.71 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . B 2 -41.153 -11.684 4.028 1 48.13 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . B 2 -39.964 -9.34 4.129 1 55.9 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . B 2 -42.027 -15.046 7.247 1 73.05 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #