data_4JTU # _model_server_result.job_id zZ0Rpio7aH41WN22wU1fXA _model_server_result.datetime_utc '2024-11-23 13:43:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jtu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JTU # _exptl.entry_id 4JTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JTU _cell.length_a 90.62 _cell.length_b 90.62 _cell.length_c 123.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 113 n n N1 C10 FMN doub 114 n n C2 O2 FMN doub 115 n n C2 N3 FMN sing 116 n n N3 C4 FMN sing 117 n n N3 HN3 FMN sing 118 n n C4 O4 FMN doub 119 n n C4 C4A FMN sing 120 n n C4A N5 FMN doub 121 n n C4A C10 FMN sing 122 n n N5 C5A FMN sing 123 n n C5A C6 FMN doub 124 n y C5A C9A FMN sing 125 n y C6 C7 FMN sing 126 n y C6 H6 FMN sing 127 n n C7 C7M FMN sing 128 n n C7 C8 FMN doub 129 n y C7M HM71 FMN sing 130 n n C7M HM72 FMN sing 131 n n C7M HM73 FMN sing 132 n n C8 C8M FMN sing 133 n n C8 C9 FMN sing 134 n y C8M HM81 FMN sing 135 n n C8M HM82 FMN sing 136 n n C8M HM83 FMN sing 137 n n C9 C9A FMN doub 138 n y C9 H9 FMN sing 139 n n C9A N10 FMN sing 140 n n N10 C10 FMN sing 141 n n N10 C1' FMN sing 142 n n C1' C2' FMN sing 143 n n C1' "H1'1" FMN sing 144 n n C1' "H1'2" FMN sing 145 n n C2' O2' FMN sing 146 n n C2' C3' FMN sing 147 n n C2' H2' FMN sing 148 n n O2' HO2' FMN sing 149 n n C3' O3' FMN sing 150 n n C3' C4' FMN sing 151 n n C3' H3' FMN sing 152 n n O3' HO3' FMN sing 153 n n C4' O4' FMN sing 154 n n C4' C5' FMN sing 155 n n C4' H4' FMN sing 156 n n O4' HO4' FMN sing 157 n n C5' O5' FMN sing 158 n n C5' "H5'1" FMN sing 159 n n C5' "H5'2" FMN sing 160 n n O5' P FMN sing 161 n n P O1P FMN doub 162 n n P O2P FMN sing 163 n n P O3P FMN sing 164 n n O2P HOP2 FMN sing 165 n n O3P HOP3 FMN sing 166 n n # _atom_sites.entry_id 4JTU _atom_sites.fract_transf_matrix[1][1] 0.011035 _atom_sites.fract_transf_matrix[1][2] 0.006371 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 SO4 A 1 403 400 SO4 SO4 . E 4 SO4 A 1 404 401 SO4 SO4 . F 4 SO4 A 1 405 402 SO4 SO4 . G 5 DET A 1 406 400 DET DET . H 6 JTU A 1 407 1 JTU BRY . I 7 HOH A 1 501 2 HOH HOH . I 7 HOH A 2 502 3 HOH HOH . I 7 HOH A 3 503 4 HOH HOH . I 7 HOH A 4 504 5 HOH HOH . I 7 HOH A 5 505 6 HOH HOH . I 7 HOH A 6 506 7 HOH HOH . I 7 HOH A 7 507 8 HOH HOH . I 7 HOH A 8 508 9 HOH HOH . I 7 HOH A 9 509 10 HOH HOH . I 7 HOH A 10 510 11 HOH HOH . I 7 HOH A 11 511 12 HOH HOH . I 7 HOH A 12 512 13 HOH HOH . I 7 HOH A 13 513 14 HOH HOH . I 7 HOH A 14 514 15 HOH HOH . I 7 HOH A 15 515 16 HOH HOH . I 7 HOH A 16 516 17 HOH HOH . I 7 HOH A 17 517 18 HOH HOH . I 7 HOH A 18 518 19 HOH HOH . I 7 HOH A 19 519 20 HOH HOH . I 7 HOH A 20 520 21 HOH HOH . I 7 HOH A 21 521 22 HOH HOH . I 7 HOH A 22 522 23 HOH HOH . I 7 HOH A 23 523 24 HOH HOH . I 7 HOH A 24 524 25 HOH HOH . I 7 HOH A 25 525 26 HOH HOH . I 7 HOH A 26 526 27 HOH HOH . I 7 HOH A 27 527 28 HOH HOH . I 7 HOH A 28 528 29 HOH HOH . I 7 HOH A 29 529 30 HOH HOH . I 7 HOH A 30 530 31 HOH HOH . I 7 HOH A 31 531 32 HOH HOH . I 7 HOH A 32 532 33 HOH HOH . I 7 HOH A 33 533 34 HOH HOH . I 7 HOH A 34 534 35 HOH HOH . I 7 HOH A 35 535 36 HOH HOH . I 7 HOH A 36 536 37 HOH HOH . I 7 HOH A 37 537 38 HOH HOH . I 7 HOH A 38 538 39 HOH HOH . I 7 HOH A 39 539 40 HOH HOH . I 7 HOH A 40 540 41 HOH HOH . I 7 HOH A 41 541 42 HOH HOH . I 7 HOH A 42 542 43 HOH HOH . I 7 HOH A 43 543 44 HOH HOH . I 7 HOH A 44 544 45 HOH HOH . I 7 HOH A 45 545 46 HOH HOH . I 7 HOH A 46 546 47 HOH HOH . I 7 HOH A 47 547 48 HOH HOH . I 7 HOH A 48 548 49 HOH HOH . I 7 HOH A 49 549 50 HOH HOH . I 7 HOH A 50 550 51 HOH HOH . I 7 HOH A 51 551 52 HOH HOH . I 7 HOH A 52 552 53 HOH HOH . I 7 HOH A 53 553 54 HOH HOH . I 7 HOH A 54 554 55 HOH HOH . I 7 HOH A 55 555 56 HOH HOH . I 7 HOH A 56 556 57 HOH HOH . I 7 HOH A 57 557 58 HOH HOH . I 7 HOH A 58 558 59 HOH HOH . I 7 HOH A 59 559 60 HOH HOH . I 7 HOH A 60 560 61 HOH HOH . I 7 HOH A 61 561 62 HOH HOH . I 7 HOH A 62 562 63 HOH HOH . I 7 HOH A 63 563 64 HOH HOH . I 7 HOH A 64 564 65 HOH HOH . I 7 HOH A 65 565 66 HOH HOH . I 7 HOH A 66 566 67 HOH HOH . I 7 HOH A 67 567 68 HOH HOH . I 7 HOH A 68 568 69 HOH HOH . I 7 HOH A 69 569 70 HOH HOH . I 7 HOH A 70 570 71 HOH HOH . I 7 HOH A 71 571 72 HOH HOH . I 7 HOH A 72 572 73 HOH HOH . I 7 HOH A 73 573 74 HOH HOH . I 7 HOH A 74 574 75 HOH HOH . I 7 HOH A 75 575 76 HOH HOH . I 7 HOH A 76 576 78 HOH HOH . I 7 HOH A 77 577 79 HOH HOH . I 7 HOH A 78 578 80 HOH HOH . I 7 HOH A 79 579 81 HOH HOH . I 7 HOH A 80 580 82 HOH HOH . I 7 HOH A 81 581 83 HOH HOH . I 7 HOH A 82 582 84 HOH HOH . I 7 HOH A 83 583 85 HOH HOH . I 7 HOH A 84 584 86 HOH HOH . I 7 HOH A 85 585 87 HOH HOH . I 7 HOH A 86 586 88 HOH HOH . I 7 HOH A 87 587 89 HOH HOH . I 7 HOH A 88 588 90 HOH HOH . I 7 HOH A 89 589 91 HOH HOH . I 7 HOH A 90 590 92 HOH HOH . I 7 HOH A 91 591 93 HOH HOH . I 7 HOH A 92 592 94 HOH HOH . I 7 HOH A 93 593 96 HOH HOH . I 7 HOH A 94 594 97 HOH HOH . I 7 HOH A 95 595 98 HOH HOH . I 7 HOH A 96 596 99 HOH HOH . I 7 HOH A 97 597 100 HOH HOH . I 7 HOH A 98 598 101 HOH HOH . I 7 HOH A 99 599 102 HOH HOH . I 7 HOH A 100 600 103 HOH HOH . I 7 HOH A 101 601 104 HOH HOH . I 7 HOH A 102 602 105 HOH HOH . I 7 HOH A 103 603 106 HOH HOH . I 7 HOH A 104 604 107 HOH HOH . I 7 HOH A 105 605 108 HOH HOH . I 7 HOH A 106 606 109 HOH HOH . I 7 HOH A 107 607 110 HOH HOH . I 7 HOH A 108 608 111 HOH HOH . I 7 HOH A 109 609 112 HOH HOH . I 7 HOH A 110 610 113 HOH HOH . I 7 HOH A 111 611 114 HOH HOH . I 7 HOH A 112 612 117 HOH HOH . I 7 HOH A 113 613 118 HOH HOH . I 7 HOH A 114 614 119 HOH HOH . I 7 HOH A 115 615 120 HOH HOH . I 7 HOH A 116 616 122 HOH HOH . I 7 HOH A 117 617 123 HOH HOH . I 7 HOH A 118 618 124 HOH HOH . I 7 HOH A 119 619 125 HOH HOH . I 7 HOH A 120 620 126 HOH HOH . I 7 HOH A 121 621 127 HOH HOH . I 7 HOH A 122 622 128 HOH HOH . I 7 HOH A 123 623 129 HOH HOH . I 7 HOH A 124 624 130 HOH HOH . I 7 HOH A 125 625 131 HOH HOH . I 7 HOH A 126 626 132 HOH HOH . I 7 HOH A 127 627 133 HOH HOH . I 7 HOH A 128 628 134 HOH HOH . I 7 HOH A 129 629 135 HOH HOH . I 7 HOH A 130 630 136 HOH HOH . I 7 HOH A 131 631 137 HOH HOH . I 7 HOH A 132 632 138 HOH HOH . I 7 HOH A 133 633 139 HOH HOH . I 7 HOH A 134 634 140 HOH HOH . I 7 HOH A 135 635 141 HOH HOH . I 7 HOH A 136 636 142 HOH HOH . I 7 HOH A 137 637 143 HOH HOH . I 7 HOH A 138 638 144 HOH HOH . I 7 HOH A 139 639 145 HOH HOH . I 7 HOH A 140 640 146 HOH HOH . I 7 HOH A 141 641 147 HOH HOH . I 7 HOH A 142 642 148 HOH HOH . I 7 HOH A 143 643 149 HOH HOH . I 7 HOH A 144 644 151 HOH HOH . I 7 HOH A 145 645 152 HOH HOH . I 7 HOH A 146 646 153 HOH HOH . I 7 HOH A 147 647 154 HOH HOH . I 7 HOH A 148 648 156 HOH HOH . I 7 HOH A 149 649 157 HOH HOH . I 7 HOH A 150 650 158 HOH HOH . I 7 HOH A 151 651 159 HOH HOH . I 7 HOH A 152 652 160 HOH HOH . I 7 HOH A 153 653 161 HOH HOH . I 7 HOH A 154 654 162 HOH HOH . I 7 HOH A 155 655 163 HOH HOH . I 7 HOH A 156 656 164 HOH HOH . I 7 HOH A 157 657 166 HOH HOH . I 7 HOH A 158 658 167 HOH HOH . I 7 HOH A 159 659 168 HOH HOH . I 7 HOH A 160 660 171 HOH HOH . I 7 HOH A 161 661 172 HOH HOH . I 7 HOH A 162 662 173 HOH HOH . I 7 HOH A 163 663 174 HOH HOH . I 7 HOH A 164 664 175 HOH HOH . I 7 HOH A 165 665 176 HOH HOH . I 7 HOH A 166 666 177 HOH HOH . I 7 HOH A 167 667 178 HOH HOH . I 7 HOH A 168 668 179 HOH HOH . I 7 HOH A 169 669 180 HOH HOH . I 7 HOH A 170 670 181 HOH HOH . I 7 HOH A 171 671 182 HOH HOH . I 7 HOH A 172 672 183 HOH HOH . I 7 HOH A 173 673 184 HOH HOH . I 7 HOH A 174 674 185 HOH HOH . I 7 HOH A 175 675 186 HOH HOH . I 7 HOH A 176 676 187 HOH HOH . I 7 HOH A 177 677 188 HOH HOH . I 7 HOH A 178 678 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -34.904 -24.173 -8.723 1 6.47 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -35.708 -24.132 -9.802 1 6.74 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -35.29 -24.616 -10.876 1 7.19 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -36.949 -23.598 -9.771 1 6.6 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -37.49 -23.052 -8.67 1 6.73 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -38.636 -22.543 -8.631 1 6.82 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -36.697 -23.061 -7.432 1 6.61 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -37.185 -22.553 -6.259 1 6.53 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -36.405 -22.536 -5.148 1 6.58 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 -36.852 -21.977 -3.946 1 6.62 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 -36.016 -21.99 -2.829 1 6.62 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 -36.489 -21.397 -1.521 1 6.85 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 -34.645 -22.561 -2.898 1 6.68 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 -33.728 -22.541 -1.696 1 6.62 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 -34.191 -23.096 -4.086 1 6.42 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 -35.016 -23.09 -5.214 1 6.42 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -34.535 -23.671 -6.417 1 6.42 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -35.329 -23.644 -7.557 1 6.46 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -33.188 -24.249 -6.477 1 5.9 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -32.1 -23.216 -6.727 1 5.74 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -32.325 -22.64 -8.024 1 5.77 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -30.729 -23.922 -6.675 1 5.6 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 -30.694 -24.944 -7.692 1 5.47 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 -30.47 -24.632 -5.331 1 5.54 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 -31.068 -23.917 -4.227 1 5.47 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 -28.955 -24.806 -5.087 1 5.72 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -28.296 -23.538 -4.997 1 5.75 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 -27.973 -22.805 -3.583 1 6.46 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -27.354 -23.866 -2.721 1 6.58 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 -29.283 -22.285 -3.032 1 6.66 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 -26.996 -21.708 -3.921 1 6.22 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #