data_4JUK # _model_server_result.job_id 0qytH2WHprJdxlkQccYo9w _model_server_result.datetime_utc '2024-10-19 23:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4juk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4JUK # _exptl.entry_id 4JUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JUK _cell.length_a 116.365 _cell.length_b 116.365 _cell.length_c 134.596 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.1825 -100.775046 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.365 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 48 A CYS 52 1_555 A SG CYS 280 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 61 A CYS 64 1_555 A SG CYS 73 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 96 A CYS 97 1_555 A SG CYS 141 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf5 A SG CYS 284 A CYS 281 1_555 A SG CYS 308 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 29 A ASN 34 1_555 E C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A ND2 ASN 171 A ASN 169 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 292 A ASN 289 1_555 F C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JUK _atom_sites.fract_transf_matrix[1][1] 0.008594 _atom_sites.fract_transf_matrix[1][2] 0.004962 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 401 1 SO4 SO4 . D 4 NAG A 1 402 402 NAG NAG . E 4 NAG A 1 403 403 NAG NAG . F 4 NAG A 1 404 5 NAG NAG . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 10 HOH HOH . G 5 HOH A 11 511 11 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 13 HOH HOH . G 5 HOH A 14 514 14 HOH HOH . G 5 HOH A 15 515 15 HOH HOH . G 5 HOH A 16 516 16 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 18 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 20 HOH HOH . G 5 HOH A 21 521 21 HOH HOH . G 5 HOH A 22 522 22 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 24 HOH HOH . G 5 HOH A 25 525 25 HOH HOH . G 5 HOH A 26 526 26 HOH HOH . G 5 HOH A 27 527 27 HOH HOH . G 5 HOH A 28 528 28 HOH HOH . G 5 HOH A 29 529 29 HOH HOH . G 5 HOH A 30 530 31 HOH HOH . G 5 HOH A 31 531 32 HOH HOH . G 5 HOH A 32 532 33 HOH HOH . G 5 HOH A 33 533 34 HOH HOH . G 5 HOH A 34 534 37 HOH HOH . G 5 HOH A 35 535 38 HOH HOH . G 5 HOH A 36 536 39 HOH HOH . G 5 HOH A 37 537 40 HOH HOH . G 5 HOH A 38 538 43 HOH HOH . G 5 HOH A 39 539 46 HOH HOH . G 5 HOH A 40 540 47 HOH HOH . G 5 HOH A 41 541 48 HOH HOH . G 5 HOH A 42 542 49 HOH HOH . G 5 HOH A 43 543 50 HOH HOH . G 5 HOH A 44 544 51 HOH HOH . G 5 HOH A 45 545 52 HOH HOH . G 5 HOH A 46 546 53 HOH HOH . G 5 HOH A 47 547 54 HOH HOH . G 5 HOH A 48 548 55 HOH HOH . G 5 HOH A 49 549 56 HOH HOH . H 5 HOH B 1 201 30 HOH HOH . H 5 HOH B 2 202 35 HOH HOH . H 5 HOH B 3 203 36 HOH HOH . H 5 HOH B 4 204 41 HOH HOH . H 5 HOH B 5 205 42 HOH HOH . H 5 HOH B 6 206 44 HOH HOH . H 5 HOH B 7 207 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 44.532 -15.719 11.013 1 74.93 ? C1 NAG 403 A 1 HETATM 2 C C2 NAG . . . E 4 45.282 -14.442 11.292 1 78.28 ? C2 NAG 403 A 1 HETATM 3 C C3 NAG . . . E 4 45.122 -14.227 12.784 1 82.64 ? C3 NAG 403 A 1 HETATM 4 C C4 NAG . . . E 4 43.628 -14.101 13.121 1 81.42 ? C4 NAG 403 A 1 HETATM 5 C C5 NAG . . . E 4 42.749 -15.175 12.46 1 79.55 ? C5 NAG 403 A 1 HETATM 6 C C6 NAG . . . E 4 41.277 -14.757 12.44 1 78.14 ? C6 NAG 403 A 1 HETATM 7 C C7 NAG . . . E 4 46.982 -14.537 9.553 1 80.86 ? C7 NAG 403 A 1 HETATM 8 C C8 NAG . . . E 4 48.394 -14.905 9.195 1 75.83 ? C8 NAG 403 A 1 HETATM 9 N N2 NAG . . . E 4 46.659 -14.58 10.852 1 83.11 ? N2 NAG 403 A 1 HETATM 10 O O3 NAG . . . E 4 45.833 -13.076 13.184 1 86.81 ? O3 NAG 403 A 1 HETATM 11 O O4 NAG . . . E 4 43.452 -14.211 14.516 1 82.62 ? O4 NAG 403 A 1 HETATM 12 O O5 NAG . . . E 4 43.147 -15.477 11.135 1 76.21 ? O5 NAG 403 A 1 HETATM 13 O O6 NAG . . . E 4 40.604 -15.225 13.59 1 69.84 ? O6 NAG 403 A 1 HETATM 14 O O7 NAG . . . E 4 46.188 -14.217 8.665 1 73.16 ? O7 NAG 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #