data_4JUT # _model_server_result.job_id Hcds71cOMc1snhA_RyO4Ug _model_server_result.datetime_utc '2025-01-12 02:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 4JUT # _exptl.entry_id 4JUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.21 _cell.angle_gamma 90 _cell.entry_id 4JUT _cell.length_a 69.44 _cell.length_b 86.01 _cell.length_c 87.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,O,P,Q,R 1 1 E,F,G,H,L,M,N,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 100 n n C1 C2 GOL sing 101 n n C1 H11 GOL sing 102 n n C1 H12 GOL sing 103 n n O1 HO1 GOL sing 104 n n C2 O2 GOL sing 105 n n C2 C3 GOL sing 106 n n C2 H2 GOL sing 107 n n O2 HO2 GOL sing 108 n n C3 O3 GOL sing 109 n n C3 H31 GOL sing 110 n n C3 H32 GOL sing 111 n n O3 HO3 GOL sing 112 n n # _atom_sites.entry_id 4JUT _atom_sites.fract_transf_matrix[1][1] 0.014401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL B 1 201 1 GOL GOL . J 2 GOL B 1 202 1 GOL GOL . K 2 GOL C 1 201 1 GOL GOL . L 2 GOL E 1 201 1 GOL GOL . M 2 GOL G 1 201 1 GOL GOL . N 2 GOL H 1 201 1 GOL GOL . O 3 HOH A 1 201 1 HOH HOH . O 3 HOH A 2 202 2 HOH HOH . O 3 HOH A 3 203 3 HOH HOH . O 3 HOH A 4 204 4 HOH HOH . O 3 HOH A 5 205 5 HOH HOH . O 3 HOH A 6 206 6 HOH HOH . O 3 HOH A 7 207 7 HOH HOH . O 3 HOH A 8 208 8 HOH HOH . O 3 HOH A 9 209 9 HOH HOH . O 3 HOH A 10 210 10 HOH HOH . O 3 HOH A 11 211 11 HOH HOH . O 3 HOH A 12 212 12 HOH HOH . O 3 HOH A 13 213 113 HOH HOH . O 3 HOH A 14 214 115 HOH HOH . O 3 HOH A 15 215 118 HOH HOH . O 3 HOH A 16 216 132 HOH HOH . O 3 HOH A 17 217 136 HOH HOH . O 3 HOH A 18 218 152 HOH HOH . O 3 HOH A 19 219 156 HOH HOH . O 3 HOH A 20 220 166 HOH HOH . O 3 HOH A 21 221 174 HOH HOH . O 3 HOH A 22 222 175 HOH HOH . P 3 HOH B 1 301 14 HOH HOH . P 3 HOH B 2 302 15 HOH HOH . P 3 HOH B 3 303 16 HOH HOH . P 3 HOH B 4 304 17 HOH HOH . P 3 HOH B 5 305 18 HOH HOH . P 3 HOH B 6 306 20 HOH HOH . P 3 HOH B 7 307 22 HOH HOH . P 3 HOH B 8 308 23 HOH HOH . P 3 HOH B 9 309 24 HOH HOH . P 3 HOH B 10 310 25 HOH HOH . P 3 HOH B 11 311 26 HOH HOH . P 3 HOH B 12 312 27 HOH HOH . P 3 HOH B 13 313 28 HOH HOH . P 3 HOH B 14 314 29 HOH HOH . P 3 HOH B 15 315 30 HOH HOH . P 3 HOH B 16 316 31 HOH HOH . P 3 HOH B 17 317 32 HOH HOH . P 3 HOH B 18 318 35 HOH HOH . P 3 HOH B 19 319 107 HOH HOH . P 3 HOH B 20 320 108 HOH HOH . P 3 HOH B 21 321 121 HOH HOH . P 3 HOH B 22 322 125 HOH HOH . P 3 HOH B 23 323 126 HOH HOH . P 3 HOH B 24 324 131 HOH HOH . P 3 HOH B 25 325 133 HOH HOH . P 3 HOH B 26 326 134 HOH HOH . P 3 HOH B 27 327 137 HOH HOH . P 3 HOH B 28 328 141 HOH HOH . P 3 HOH B 29 329 142 HOH HOH . P 3 HOH B 30 330 143 HOH HOH . P 3 HOH B 31 331 145 HOH HOH . P 3 HOH B 32 332 150 HOH HOH . P 3 HOH B 33 333 168 HOH HOH . Q 3 HOH C 1 301 13 HOH HOH . Q 3 HOH C 2 302 19 HOH HOH . Q 3 HOH C 3 303 33 HOH HOH . Q 3 HOH C 4 304 34 HOH HOH . Q 3 HOH C 5 305 36 HOH HOH . Q 3 HOH C 6 306 37 HOH HOH . Q 3 HOH C 7 307 39 HOH HOH . Q 3 HOH C 8 308 40 HOH HOH . Q 3 HOH C 9 309 41 HOH HOH . Q 3 HOH C 10 310 42 HOH HOH . Q 3 HOH C 11 311 43 HOH HOH . Q 3 HOH C 12 312 44 HOH HOH . Q 3 HOH C 13 313 50 HOH HOH . Q 3 HOH C 14 314 109 HOH HOH . Q 3 HOH C 15 315 120 HOH HOH . Q 3 HOH C 16 316 129 HOH HOH . Q 3 HOH C 17 317 130 HOH HOH . Q 3 HOH C 18 318 140 HOH HOH . Q 3 HOH C 19 319 144 HOH HOH . Q 3 HOH C 20 320 151 HOH HOH . Q 3 HOH C 21 321 154 HOH HOH . Q 3 HOH C 22 322 162 HOH HOH . Q 3 HOH C 23 323 169 HOH HOH . Q 3 HOH C 24 324 170 HOH HOH . R 3 HOH D 1 201 45 HOH HOH . R 3 HOH D 2 202 46 HOH HOH . R 3 HOH D 3 203 47 HOH HOH . R 3 HOH D 4 204 48 HOH HOH . R 3 HOH D 5 205 49 HOH HOH . R 3 HOH D 6 206 51 HOH HOH . R 3 HOH D 7 207 52 HOH HOH . R 3 HOH D 8 208 53 HOH HOH . R 3 HOH D 9 209 54 HOH HOH . R 3 HOH D 10 210 55 HOH HOH . R 3 HOH D 11 211 56 HOH HOH . R 3 HOH D 12 212 57 HOH HOH . R 3 HOH D 13 213 110 HOH HOH . R 3 HOH D 14 214 117 HOH HOH . R 3 HOH D 15 215 124 HOH HOH . R 3 HOH D 16 216 138 HOH HOH . R 3 HOH D 17 217 146 HOH HOH . R 3 HOH D 18 218 147 HOH HOH . R 3 HOH D 19 219 159 HOH HOH . R 3 HOH D 20 220 172 HOH HOH . R 3 HOH D 21 221 176 HOH HOH . R 3 HOH D 22 222 177 HOH HOH . S 3 HOH E 1 301 21 HOH HOH . S 3 HOH E 2 302 38 HOH HOH . S 3 HOH E 3 303 69 HOH HOH . S 3 HOH E 4 304 70 HOH HOH . S 3 HOH E 5 305 71 HOH HOH . S 3 HOH E 6 306 72 HOH HOH . S 3 HOH E 7 307 73 HOH HOH . S 3 HOH E 8 308 74 HOH HOH . S 3 HOH E 9 309 75 HOH HOH . S 3 HOH E 10 310 76 HOH HOH . S 3 HOH E 11 311 77 HOH HOH . S 3 HOH E 12 312 78 HOH HOH . S 3 HOH E 13 313 79 HOH HOH . S 3 HOH E 14 314 80 HOH HOH . S 3 HOH E 15 315 81 HOH HOH . S 3 HOH E 16 316 82 HOH HOH . S 3 HOH E 17 317 106 HOH HOH . S 3 HOH E 18 318 111 HOH HOH . S 3 HOH E 19 319 123 HOH HOH . S 3 HOH E 20 320 139 HOH HOH . S 3 HOH E 21 321 155 HOH HOH . S 3 HOH E 22 322 157 HOH HOH . S 3 HOH E 23 323 160 HOH HOH . S 3 HOH E 24 324 163 HOH HOH . S 3 HOH E 25 325 165 HOH HOH . S 3 HOH E 26 326 167 HOH HOH . S 3 HOH E 27 327 173 HOH HOH . T 3 HOH F 1 201 58 HOH HOH . T 3 HOH F 2 202 59 HOH HOH . T 3 HOH F 3 203 60 HOH HOH . T 3 HOH F 4 204 61 HOH HOH . T 3 HOH F 5 205 62 HOH HOH . T 3 HOH F 6 206 63 HOH HOH . T 3 HOH F 7 207 64 HOH HOH . T 3 HOH F 8 208 65 HOH HOH . T 3 HOH F 9 209 66 HOH HOH . T 3 HOH F 10 210 67 HOH HOH . T 3 HOH F 11 211 68 HOH HOH . T 3 HOH F 12 212 102 HOH HOH . T 3 HOH F 13 213 112 HOH HOH . T 3 HOH F 14 214 128 HOH HOH . T 3 HOH F 15 215 148 HOH HOH . T 3 HOH F 16 216 161 HOH HOH . T 3 HOH F 17 217 164 HOH HOH . U 3 HOH G 1 301 89 HOH HOH . U 3 HOH G 2 302 90 HOH HOH . U 3 HOH G 3 303 91 HOH HOH . U 3 HOH G 4 304 92 HOH HOH . U 3 HOH G 5 305 93 HOH HOH . U 3 HOH G 6 306 94 HOH HOH . U 3 HOH G 7 307 95 HOH HOH . U 3 HOH G 8 308 96 HOH HOH . U 3 HOH G 9 309 97 HOH HOH . U 3 HOH G 10 310 98 HOH HOH . U 3 HOH G 11 311 99 HOH HOH . U 3 HOH G 12 312 100 HOH HOH . U 3 HOH G 13 313 101 HOH HOH . U 3 HOH G 14 314 103 HOH HOH . U 3 HOH G 15 315 104 HOH HOH . U 3 HOH G 16 316 105 HOH HOH . U 3 HOH G 17 317 114 HOH HOH . U 3 HOH G 18 318 122 HOH HOH . U 3 HOH G 19 319 127 HOH HOH . V 3 HOH H 1 301 83 HOH HOH . V 3 HOH H 2 302 84 HOH HOH . V 3 HOH H 3 303 85 HOH HOH . V 3 HOH H 4 304 86 HOH HOH . V 3 HOH H 5 305 87 HOH HOH . V 3 HOH H 6 306 88 HOH HOH . V 3 HOH H 7 307 116 HOH HOH . V 3 HOH H 8 308 119 HOH HOH . V 3 HOH H 9 309 135 HOH HOH . V 3 HOH H 10 310 149 HOH HOH . V 3 HOH H 11 311 153 HOH HOH . V 3 HOH H 12 312 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 6.562 28.843 23.234 1 52.18 ? C1 GOL 201 E 1 HETATM 2 O O1 GOL . . . L 2 6.146 28.636 21.901 1 50.96 ? O1 GOL 201 E 1 HETATM 3 C C2 GOL . . . L 2 6.974 27.522 23.871 1 63.37 ? C2 GOL 201 E 1 HETATM 4 O O2 GOL . . . L 2 7.271 27.72 25.24 1 62.34 ? O2 GOL 201 E 1 HETATM 5 C C3 GOL . . . L 2 8.169 26.897 23.142 1 69.86 ? C3 GOL 201 E 1 HETATM 6 O O3 GOL . . . L 2 7.907 26.674 21.769 1 69.51 ? O3 GOL 201 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #