data_4JV6 # _model_server_result.job_id PydjbsE31UHgdDSC9qXI0w _model_server_result.datetime_utc '2025-09-09 15:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4JV6 # _exptl.entry_id 4JV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-benzyl-2-phenyl-1H-benzimidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JV6 _cell.length_a 55.36 _cell.length_b 55.36 _cell.length_c 115.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C20 H16 N2' _chem_comp.formula_weight 284.354 _chem_comp.id 18F _chem_comp.mon_nstd_flag . _chem_comp.name 1-benzyl-2-phenyl-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAG 18F doub 1 n y CAF CAC 18F sing 2 n y CAG CAH 18F sing 3 n y NAB CAC 18F sing 4 n y NAB CAA 18F doub 5 n y CAC CAD 18F doub 6 n y CAK CAL 18F doub 7 n y CAK CAJ 18F sing 8 n y CAL CAM 18F sing 9 n y CAH CAI 18F doub 10 n y CAA CAJ 18F sing 11 n n CAA NAE 18F sing 12 n y CAJ CAO 18F doub 13 n y CAD CAI 18F sing 14 n y CAD NAE 18F sing 15 n y CAM CAN 18F doub 16 n y NAE CAP 18F sing 17 n n CAO CAN 18F sing 18 n y CAP CAQ 18F sing 19 n n CAV CAU 18F doub 20 n y CAV CAQ 18F sing 21 n y CAU CAT 18F sing 22 n y CAQ CAR 18F doub 23 n y CAT CAS 18F doub 24 n y CAR CAS 18F sing 25 n y CAR H1 18F sing 26 n n CAS H2 18F sing 27 n n CAT H3 18F sing 28 n n CAU H4 18F sing 29 n n CAV H5 18F sing 30 n n CAP H6 18F sing 31 n n CAP H7 18F sing 32 n n CAI H8 18F sing 33 n n CAH H9 18F sing 34 n n CAG H10 18F sing 35 n n CAF H11 18F sing 36 n n CAK H12 18F sing 37 n n CAL H13 18F sing 38 n n CAM H14 18F sing 39 n n CAN H15 18F sing 40 n n CAO H16 18F sing 41 n n # _atom_sites.entry_id 4JV6 _atom_sites.fract_transf_matrix[1][1] 0.018064 _atom_sites.fract_transf_matrix[1][2] 0.010429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 18F B 1 201 1 18F 18F . C 2 18F B 1 202 1 18F 18F . D 3 HOH B 1 301 301 HOH HOH . D 3 HOH B 2 302 302 HOH HOH . D 3 HOH B 3 303 303 HOH HOH . D 3 HOH B 4 304 304 HOH HOH . D 3 HOH B 5 305 305 HOH HOH . D 3 HOH B 6 306 306 HOH HOH . D 3 HOH B 7 307 307 HOH HOH . D 3 HOH B 8 308 308 HOH HOH . D 3 HOH B 9 309 309 HOH HOH . D 3 HOH B 10 310 310 HOH HOH . D 3 HOH B 11 311 311 HOH HOH . D 3 HOH B 12 312 312 HOH HOH . D 3 HOH B 13 313 313 HOH HOH . D 3 HOH B 14 314 314 HOH HOH . D 3 HOH B 15 315 315 HOH HOH . D 3 HOH B 16 316 316 HOH HOH . D 3 HOH B 17 317 317 HOH HOH . D 3 HOH B 18 318 318 HOH HOH . D 3 HOH B 19 319 319 HOH HOH . D 3 HOH B 20 320 320 HOH HOH . D 3 HOH B 21 321 321 HOH HOH . D 3 HOH B 22 322 322 HOH HOH . D 3 HOH B 23 323 323 HOH HOH . D 3 HOH B 24 324 324 HOH HOH . D 3 HOH B 25 325 325 HOH HOH . D 3 HOH B 26 326 326 HOH HOH . D 3 HOH B 27 327 327 HOH HOH . D 3 HOH B 28 328 328 HOH HOH . D 3 HOH B 29 329 329 HOH HOH . D 3 HOH B 30 330 330 HOH HOH . D 3 HOH B 31 331 331 HOH HOH . D 3 HOH B 32 332 332 HOH HOH . D 3 HOH B 33 333 333 HOH HOH . D 3 HOH B 34 334 334 HOH HOH . D 3 HOH B 35 335 335 HOH HOH . D 3 HOH B 36 336 336 HOH HOH . D 3 HOH B 37 337 337 HOH HOH . D 3 HOH B 38 338 338 HOH HOH . D 3 HOH B 39 339 339 HOH HOH . D 3 HOH B 40 340 340 HOH HOH . D 3 HOH B 41 341 341 HOH HOH . D 3 HOH B 42 342 342 HOH HOH . D 3 HOH B 43 343 343 HOH HOH . D 3 HOH B 44 344 344 HOH HOH . D 3 HOH B 45 345 345 HOH HOH . D 3 HOH B 46 346 346 HOH HOH . D 3 HOH B 47 347 347 HOH HOH . D 3 HOH B 48 348 348 HOH HOH . D 3 HOH B 49 349 349 HOH HOH . D 3 HOH B 50 350 350 HOH HOH . D 3 HOH B 51 351 351 HOH HOH . D 3 HOH B 52 352 352 HOH HOH . D 3 HOH B 53 353 353 HOH HOH . D 3 HOH B 54 354 354 HOH HOH . D 3 HOH B 55 355 355 HOH HOH . D 3 HOH B 56 356 356 HOH HOH . D 3 HOH B 57 357 357 HOH HOH . D 3 HOH B 58 358 358 HOH HOH . D 3 HOH B 59 359 359 HOH HOH . D 3 HOH B 60 360 360 HOH HOH . D 3 HOH B 61 361 361 HOH HOH . D 3 HOH B 62 362 362 HOH HOH . D 3 HOH B 63 363 363 HOH HOH . D 3 HOH B 64 364 364 HOH HOH . D 3 HOH B 65 365 365 HOH HOH . D 3 HOH B 66 366 366 HOH HOH . D 3 HOH B 67 367 367 HOH HOH . D 3 HOH B 68 368 368 HOH HOH . D 3 HOH B 69 369 369 HOH HOH . D 3 HOH B 70 370 370 HOH HOH . D 3 HOH B 71 371 371 HOH HOH . D 3 HOH B 72 372 372 HOH HOH . D 3 HOH B 73 373 373 HOH HOH . D 3 HOH B 74 374 374 HOH HOH . D 3 HOH B 75 375 375 HOH HOH . D 3 HOH B 76 376 376 HOH HOH . D 3 HOH B 77 377 377 HOH HOH . D 3 HOH B 78 378 378 HOH HOH . D 3 HOH B 79 379 379 HOH HOH . D 3 HOH B 80 380 380 HOH HOH . D 3 HOH B 81 381 381 HOH HOH . D 3 HOH B 82 382 382 HOH HOH . D 3 HOH B 83 383 383 HOH HOH . D 3 HOH B 84 384 384 HOH HOH . D 3 HOH B 85 385 385 HOH HOH . D 3 HOH B 86 386 386 HOH HOH . D 3 HOH B 87 387 387 HOH HOH . D 3 HOH B 88 388 388 HOH HOH . D 3 HOH B 89 389 389 HOH HOH . D 3 HOH B 90 390 390 HOH HOH . D 3 HOH B 91 391 391 HOH HOH . D 3 HOH B 92 392 392 HOH HOH . D 3 HOH B 93 393 393 HOH HOH . D 3 HOH B 94 394 394 HOH HOH . D 3 HOH B 95 395 395 HOH HOH . D 3 HOH B 96 396 396 HOH HOH . D 3 HOH B 97 397 397 HOH HOH . D 3 HOH B 98 398 398 HOH HOH . D 3 HOH B 99 399 399 HOH HOH . D 3 HOH B 100 400 400 HOH HOH . D 3 HOH B 101 401 401 HOH HOH . D 3 HOH B 102 402 402 HOH HOH . D 3 HOH B 103 403 403 HOH HOH . D 3 HOH B 104 404 404 HOH HOH . D 3 HOH B 105 405 405 HOH HOH . D 3 HOH B 106 406 406 HOH HOH . D 3 HOH B 107 407 407 HOH HOH . D 3 HOH B 108 408 408 HOH HOH . D 3 HOH B 109 409 409 HOH HOH . D 3 HOH B 110 410 410 HOH HOH . D 3 HOH B 111 411 411 HOH HOH . D 3 HOH B 112 412 412 HOH HOH . D 3 HOH B 113 413 413 HOH HOH . D 3 HOH B 114 414 414 HOH HOH . D 3 HOH B 115 415 415 HOH HOH . D 3 HOH B 116 416 416 HOH HOH . D 3 HOH B 117 417 417 HOH HOH . D 3 HOH B 118 418 418 HOH HOH . D 3 HOH B 119 419 419 HOH HOH . D 3 HOH B 120 420 420 HOH HOH . D 3 HOH B 121 421 421 HOH HOH . D 3 HOH B 122 422 422 HOH HOH . D 3 HOH B 123 423 423 HOH HOH . D 3 HOH B 124 424 424 HOH HOH . D 3 HOH B 125 425 425 HOH HOH . D 3 HOH B 126 426 426 HOH HOH . D 3 HOH B 127 427 427 HOH HOH . D 3 HOH B 128 428 428 HOH HOH . D 3 HOH B 129 429 429 HOH HOH . D 3 HOH B 130 430 430 HOH HOH . D 3 HOH B 131 431 431 HOH HOH . D 3 HOH B 132 432 432 HOH HOH . D 3 HOH B 133 433 433 HOH HOH . D 3 HOH B 134 434 434 HOH HOH . D 3 HOH B 135 435 435 HOH HOH . D 3 HOH B 136 436 436 HOH HOH . D 3 HOH B 137 437 437 HOH HOH . D 3 HOH B 138 438 438 HOH HOH . D 3 HOH B 139 439 439 HOH HOH . D 3 HOH B 140 440 440 HOH HOH . D 3 HOH B 141 441 441 HOH HOH . D 3 HOH B 142 442 442 HOH HOH . D 3 HOH B 143 443 443 HOH HOH . D 3 HOH B 144 444 444 HOH HOH . D 3 HOH B 145 445 445 HOH HOH . D 3 HOH B 146 446 446 HOH HOH . D 3 HOH B 147 447 447 HOH HOH . D 3 HOH B 148 448 448 HOH HOH . D 3 HOH B 149 449 449 HOH HOH . D 3 HOH B 150 450 450 HOH HOH . D 3 HOH B 151 451 452 HOH HOH . D 3 HOH B 152 452 453 HOH HOH . D 3 HOH B 153 453 454 HOH HOH . D 3 HOH B 154 454 455 HOH HOH . D 3 HOH B 155 455 456 HOH HOH . D 3 HOH B 156 456 457 HOH HOH . D 3 HOH B 157 457 458 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR 18F . . . C 2 10.396 -13.709 12.383 1 50.28 ? CAR 18F 202 B 1 HETATM 2 C CAS 18F . . . C 2 9.964 -12.587 11.668 1 40.41 ? CAS 18F 202 B 1 HETATM 3 C CAT 18F . . . C 2 9.607 -11.438 12.364 1 39.88 ? CAT 18F 202 B 1 HETATM 4 C CAU 18F . . . C 2 9.682 -11.364 13.763 1 41.84 ? CAU 18F 202 B 1 HETATM 5 C CAV 18F . . . C 2 10.101 -12.486 14.48 1 43.68 ? CAV 18F 202 B 1 HETATM 6 C CAQ 18F . . . C 2 10.46 -13.642 13.779 1 46.83 ? CAQ 18F 202 B 1 HETATM 7 C CAP 18F . . . C 2 10.924 -14.927 14.471 1 55.85 ? CAP 18F 202 B 1 HETATM 8 N NAE 18F . . . C 2 10.996 -15.145 15.957 1 53.53 ? NAE 18F 202 B 1 HETATM 9 C CAD 18F . . . C 2 10.094 -15.865 16.664 1 39.5 ? CAD 18F 202 B 1 HETATM 10 C CAI 18F . . . C 2 8.817 -16.456 16.413 1 35.04 ? CAI 18F 202 B 1 HETATM 11 C CAH 18F . . . C 2 8.072 -17.142 17.403 1 41.24 ? CAH 18F 202 B 1 HETATM 12 C CAG 18F . . . C 2 8.603 -17.181 18.713 1 36.37 ? CAG 18F 202 B 1 HETATM 13 C CAF 18F . . . C 2 9.852 -16.562 18.909 1 31.88 ? CAF 18F 202 B 1 HETATM 14 C CAC 18F . . . C 2 10.605 -15.881 17.943 1 36.91 ? CAC 18F 202 B 1 HETATM 15 N NAB 18F . . . C 2 11.854 -15.271 17.939 1 37.26 ? NAB 18F 202 B 1 HETATM 16 C CAA 18F . . . C 2 12.036 -14.821 16.747 1 44.75 ? CAA 18F 202 B 1 HETATM 17 C CAJ 18F . . . C 2 13.136 -14.139 16.426 1 36.64 ? CAJ 18F 202 B 1 HETATM 18 C CAK 18F . . . C 2 14.292 -14.403 17.105 1 39.68 ? CAK 18F 202 B 1 HETATM 19 C CAL 18F . . . C 2 15.452 -13.749 16.794 1 36.71 ? CAL 18F 202 B 1 HETATM 20 C CAM 18F . . . C 2 15.422 -12.791 15.788 1 38.15 ? CAM 18F 202 B 1 HETATM 21 C CAN 18F . . . C 2 14.231 -12.522 15.104 1 43.14 ? CAN 18F 202 B 1 HETATM 22 C CAO 18F . . . C 2 13.07 -13.206 15.428 1 40.42 ? CAO 18F 202 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #