data_4JV8 # _model_server_result.job_id -63nUCy0zOiDAmUePnTRiA _model_server_result.datetime_utc '2024-11-26 22:56:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4JV8 # _exptl.entry_id 4JV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.341 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6R)-6-(pyridin-2-yl)-5,6-dihydrobenzimidazo[1,2-c]quinazoline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JV8 _cell.length_a 55.97 _cell.length_b 55.97 _cell.length_c 115.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C19 H14 N4' _chem_comp.formula_weight 298.341 _chem_comp.id 1M1 _chem_comp.mon_nstd_flag . _chem_comp.name (6R)-6-(pyridin-2-yl)-5,6-dihydrobenzimidazo[1,2-c]quinazoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU CAT 1M1 doub 1 n y CAU CAV 1M1 sing 2 n y CAT CAS 1M1 sing 3 n y CAS CAR 1M1 doub 4 n y CAV NAW 1M1 doub 5 n y CAR NAW 1M1 sing 6 n y CAR CAQ 1M1 sing 7 n n CAQ NAP 1M1 sing 8 n n CAQ NAE 1M1 sing 9 n n NAP CAO 1M1 sing 10 n n CAI CAH 1M1 doub 11 n y CAI CAD 1M1 sing 12 n y CAH CAG 1M1 sing 13 n y NAE CAD 1M1 sing 14 n y NAE CAA 1M1 sing 15 n y CAD CAC 1M1 doub 16 n y CAO CAN 1M1 doub 17 n y CAO CAJ 1M1 sing 18 n y CAN CAM 1M1 sing 19 n y CAG CAF 1M1 doub 20 n y CAA CAJ 1M1 sing 21 n n CAA NAB 1M1 doub 22 n y CAJ CAK 1M1 doub 23 n y CAC CAF 1M1 sing 24 n y CAC NAB 1M1 sing 25 n y CAM CAL 1M1 doub 26 n y CAK CAL 1M1 sing 27 n y CAS H1 1M1 sing 28 n n CAT H2 1M1 sing 29 n n CAU H3 1M1 sing 30 n n CAV H4 1M1 sing 31 n n CAQ H5 1M1 sing 32 n n CAI H6 1M1 sing 33 n n CAH H7 1M1 sing 34 n n CAG H8 1M1 sing 35 n n CAF H9 1M1 sing 36 n n CAK H10 1M1 sing 37 n n CAL H11 1M1 sing 38 n n CAM H12 1M1 sing 39 n n CAN H13 1M1 sing 40 n n NAP H14 1M1 sing 41 n n # _atom_sites.entry_id 4JV8 _atom_sites.fract_transf_matrix[1][1] 0.017867 _atom_sites.fract_transf_matrix[1][2] 0.010315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1M1 B 1 201 1 1M1 1M1 . C 2 1M1 B 1 202 1 1M1 1M1 . D 3 HOH B 1 301 301 HOH HOH . D 3 HOH B 2 302 302 HOH HOH . D 3 HOH B 3 303 303 HOH HOH . D 3 HOH B 4 304 304 HOH HOH . D 3 HOH B 5 305 305 HOH HOH . D 3 HOH B 6 306 306 HOH HOH . D 3 HOH B 7 307 307 HOH HOH . D 3 HOH B 8 308 308 HOH HOH . D 3 HOH B 9 309 309 HOH HOH . D 3 HOH B 10 310 310 HOH HOH . D 3 HOH B 11 311 311 HOH HOH . D 3 HOH B 12 312 312 HOH HOH . D 3 HOH B 13 313 313 HOH HOH . D 3 HOH B 14 314 314 HOH HOH . D 3 HOH B 15 315 315 HOH HOH . D 3 HOH B 16 316 316 HOH HOH . D 3 HOH B 17 317 317 HOH HOH . D 3 HOH B 18 318 318 HOH HOH . D 3 HOH B 19 319 319 HOH HOH . D 3 HOH B 20 320 320 HOH HOH . D 3 HOH B 21 321 321 HOH HOH . D 3 HOH B 22 322 322 HOH HOH . D 3 HOH B 23 323 323 HOH HOH . D 3 HOH B 24 324 324 HOH HOH . D 3 HOH B 25 325 325 HOH HOH . D 3 HOH B 26 326 326 HOH HOH . D 3 HOH B 27 327 327 HOH HOH . D 3 HOH B 28 328 328 HOH HOH . D 3 HOH B 29 329 329 HOH HOH . D 3 HOH B 30 330 330 HOH HOH . D 3 HOH B 31 331 331 HOH HOH . D 3 HOH B 32 332 332 HOH HOH . D 3 HOH B 33 333 333 HOH HOH . D 3 HOH B 34 334 334 HOH HOH . D 3 HOH B 35 335 335 HOH HOH . D 3 HOH B 36 336 336 HOH HOH . D 3 HOH B 37 337 337 HOH HOH . D 3 HOH B 38 338 338 HOH HOH . D 3 HOH B 39 339 339 HOH HOH . D 3 HOH B 40 340 340 HOH HOH . D 3 HOH B 41 341 341 HOH HOH . D 3 HOH B 42 342 342 HOH HOH . D 3 HOH B 43 343 343 HOH HOH . D 3 HOH B 44 344 344 HOH HOH . D 3 HOH B 45 345 345 HOH HOH . D 3 HOH B 46 346 346 HOH HOH . D 3 HOH B 47 347 347 HOH HOH . D 3 HOH B 48 348 348 HOH HOH . D 3 HOH B 49 349 349 HOH HOH . D 3 HOH B 50 350 350 HOH HOH . D 3 HOH B 51 351 351 HOH HOH . D 3 HOH B 52 352 352 HOH HOH . D 3 HOH B 53 353 353 HOH HOH . D 3 HOH B 54 354 354 HOH HOH . D 3 HOH B 55 355 355 HOH HOH . D 3 HOH B 56 356 356 HOH HOH . D 3 HOH B 57 357 357 HOH HOH . D 3 HOH B 58 358 358 HOH HOH . D 3 HOH B 59 359 359 HOH HOH . D 3 HOH B 60 360 360 HOH HOH . D 3 HOH B 61 361 361 HOH HOH . D 3 HOH B 62 362 362 HOH HOH . D 3 HOH B 63 363 363 HOH HOH . D 3 HOH B 64 364 364 HOH HOH . D 3 HOH B 65 365 365 HOH HOH . D 3 HOH B 66 366 366 HOH HOH . D 3 HOH B 67 367 367 HOH HOH . D 3 HOH B 68 368 368 HOH HOH . D 3 HOH B 69 369 369 HOH HOH . D 3 HOH B 70 370 370 HOH HOH . D 3 HOH B 71 371 371 HOH HOH . D 3 HOH B 72 372 372 HOH HOH . D 3 HOH B 73 373 373 HOH HOH . D 3 HOH B 74 374 374 HOH HOH . D 3 HOH B 75 375 375 HOH HOH . D 3 HOH B 76 376 376 HOH HOH . D 3 HOH B 77 377 377 HOH HOH . D 3 HOH B 78 378 378 HOH HOH . D 3 HOH B 79 379 379 HOH HOH . D 3 HOH B 80 380 380 HOH HOH . D 3 HOH B 81 381 381 HOH HOH . D 3 HOH B 82 382 382 HOH HOH . D 3 HOH B 83 383 383 HOH HOH . D 3 HOH B 84 384 384 HOH HOH . D 3 HOH B 85 385 385 HOH HOH . D 3 HOH B 86 386 386 HOH HOH . D 3 HOH B 87 387 387 HOH HOH . D 3 HOH B 88 388 388 HOH HOH . D 3 HOH B 89 389 389 HOH HOH . D 3 HOH B 90 390 390 HOH HOH . D 3 HOH B 91 391 391 HOH HOH . D 3 HOH B 92 392 392 HOH HOH . D 3 HOH B 93 393 393 HOH HOH . D 3 HOH B 94 394 394 HOH HOH . D 3 HOH B 95 395 395 HOH HOH . D 3 HOH B 96 396 396 HOH HOH . D 3 HOH B 97 397 397 HOH HOH . D 3 HOH B 98 398 398 HOH HOH . D 3 HOH B 99 399 399 HOH HOH . D 3 HOH B 100 400 400 HOH HOH . D 3 HOH B 101 401 401 HOH HOH . D 3 HOH B 102 402 402 HOH HOH . D 3 HOH B 103 403 403 HOH HOH . D 3 HOH B 104 404 404 HOH HOH . D 3 HOH B 105 405 405 HOH HOH . D 3 HOH B 106 406 406 HOH HOH . D 3 HOH B 107 407 407 HOH HOH . D 3 HOH B 108 408 408 HOH HOH . D 3 HOH B 109 409 409 HOH HOH . D 3 HOH B 110 410 410 HOH HOH . D 3 HOH B 111 411 411 HOH HOH . D 3 HOH B 112 412 412 HOH HOH . D 3 HOH B 113 413 413 HOH HOH . D 3 HOH B 114 414 414 HOH HOH . D 3 HOH B 115 415 415 HOH HOH . D 3 HOH B 116 416 416 HOH HOH . D 3 HOH B 117 417 417 HOH HOH . D 3 HOH B 118 418 418 HOH HOH . D 3 HOH B 119 419 419 HOH HOH . D 3 HOH B 120 420 420 HOH HOH . D 3 HOH B 121 421 421 HOH HOH . D 3 HOH B 122 422 422 HOH HOH . D 3 HOH B 123 423 423 HOH HOH . D 3 HOH B 124 424 425 HOH HOH . D 3 HOH B 125 425 426 HOH HOH . D 3 HOH B 126 426 427 HOH HOH . D 3 HOH B 127 427 428 HOH HOH . D 3 HOH B 128 428 431 HOH HOH . D 3 HOH B 129 429 432 HOH HOH . D 3 HOH B 130 430 433 HOH HOH . D 3 HOH B 131 431 434 HOH HOH . D 3 HOH B 132 432 435 HOH HOH . D 3 HOH B 133 433 436 HOH HOH . D 3 HOH B 134 434 437 HOH HOH . D 3 HOH B 135 435 438 HOH HOH . D 3 HOH B 136 436 439 HOH HOH . D 3 HOH B 137 437 440 HOH HOH . D 3 HOH B 138 438 441 HOH HOH . D 3 HOH B 139 439 442 HOH HOH . D 3 HOH B 140 440 443 HOH HOH . D 3 HOH B 141 441 444 HOH HOH . D 3 HOH B 142 442 445 HOH HOH . D 3 HOH B 143 443 446 HOH HOH . D 3 HOH B 144 444 447 HOH HOH . D 3 HOH B 145 445 448 HOH HOH . D 3 HOH B 146 446 449 HOH HOH . D 3 HOH B 147 447 450 HOH HOH . D 3 HOH B 148 448 451 HOH HOH . D 3 HOH B 149 449 452 HOH HOH . D 3 HOH B 150 450 453 HOH HOH . D 3 HOH B 151 451 454 HOH HOH . D 3 HOH B 152 452 455 HOH HOH . D 3 HOH B 153 453 456 HOH HOH . D 3 HOH B 154 454 457 HOH HOH . D 3 HOH B 155 455 459 HOH HOH . D 3 HOH B 156 456 460 HOH HOH . D 3 HOH B 157 457 461 HOH HOH . D 3 HOH B 158 458 462 HOH HOH . D 3 HOH B 159 459 463 HOH HOH . D 3 HOH B 160 460 464 HOH HOH . D 3 HOH B 161 461 465 HOH HOH . D 3 HOH B 162 462 466 HOH HOH . D 3 HOH B 163 463 467 HOH HOH . D 3 HOH B 164 464 468 HOH HOH . D 3 HOH B 165 465 469 HOH HOH . D 3 HOH B 166 466 470 HOH HOH . D 3 HOH B 167 467 471 HOH HOH . D 3 HOH B 168 468 472 HOH HOH . D 3 HOH B 169 469 473 HOH HOH . D 3 HOH B 170 470 474 HOH HOH . D 3 HOH B 171 471 475 HOH HOH . D 3 HOH B 172 472 476 HOH HOH . D 3 HOH B 173 473 477 HOH HOH . D 3 HOH B 174 474 478 HOH HOH . D 3 HOH B 175 475 479 HOH HOH . D 3 HOH B 176 476 480 HOH HOH . D 3 HOH B 177 477 481 HOH HOH . D 3 HOH B 178 478 482 HOH HOH . D 3 HOH B 179 479 483 HOH HOH . D 3 HOH B 180 480 484 HOH HOH . D 3 HOH B 181 481 485 HOH HOH . D 3 HOH B 182 482 486 HOH HOH . D 3 HOH B 183 483 487 HOH HOH . D 3 HOH B 184 484 488 HOH HOH . D 3 HOH B 185 485 489 HOH HOH . D 3 HOH B 186 486 490 HOH HOH . D 3 HOH B 187 487 491 HOH HOH . D 3 HOH B 188 488 492 HOH HOH . D 3 HOH B 189 489 494 HOH HOH . D 3 HOH B 190 490 495 HOH HOH . D 3 HOH B 191 491 496 HOH HOH . D 3 HOH B 192 492 497 HOH HOH . D 3 HOH B 193 493 498 HOH HOH . D 3 HOH B 194 494 499 HOH HOH . D 3 HOH B 195 495 500 HOH HOH . D 3 HOH B 196 496 501 HOH HOH . D 3 HOH B 197 497 502 HOH HOH . D 3 HOH B 198 498 503 HOH HOH . D 3 HOH B 199 499 504 HOH HOH . D 3 HOH B 200 500 505 HOH HOH . D 3 HOH B 201 501 506 HOH HOH . D 3 HOH B 202 502 507 HOH HOH . D 3 HOH B 203 503 508 HOH HOH . D 3 HOH B 204 504 509 HOH HOH . D 3 HOH B 205 505 510 HOH HOH . D 3 HOH B 206 506 511 HOH HOH . D 3 HOH B 207 507 512 HOH HOH . D 3 HOH B 208 508 513 HOH HOH . D 3 HOH B 209 509 514 HOH HOH . D 3 HOH B 210 510 515 HOH HOH . D 3 HOH B 211 511 516 HOH HOH . D 3 HOH B 212 512 517 HOH HOH . D 3 HOH B 213 513 518 HOH HOH . D 3 HOH B 214 514 519 HOH HOH . D 3 HOH B 215 515 520 HOH HOH . D 3 HOH B 216 516 521 HOH HOH . D 3 HOH B 217 517 522 HOH HOH . D 3 HOH B 218 518 523 HOH HOH . D 3 HOH B 219 519 524 HOH HOH . D 3 HOH B 220 520 525 HOH HOH . D 3 HOH B 221 521 526 HOH HOH . D 3 HOH B 222 522 527 HOH HOH . D 3 HOH B 223 523 528 HOH HOH . D 3 HOH B 224 524 529 HOH HOH . D 3 HOH B 225 525 530 HOH HOH . D 3 HOH B 226 526 531 HOH HOH . D 3 HOH B 227 527 532 HOH HOH . D 3 HOH B 228 528 533 HOH HOH . D 3 HOH B 229 529 534 HOH HOH . D 3 HOH B 230 530 535 HOH HOH . D 3 HOH B 231 531 536 HOH HOH . D 3 HOH B 232 532 537 HOH HOH . D 3 HOH B 233 533 538 HOH HOH . D 3 HOH B 234 534 539 HOH HOH . D 3 HOH B 235 535 540 HOH HOH . D 3 HOH B 236 536 541 HOH HOH . D 3 HOH B 237 537 542 HOH HOH . D 3 HOH B 238 538 543 HOH HOH . D 3 HOH B 239 539 544 HOH HOH . D 3 HOH B 240 540 545 HOH HOH . D 3 HOH B 241 541 546 HOH HOH . D 3 HOH B 242 542 547 HOH HOH . D 3 HOH B 243 543 548 HOH HOH . D 3 HOH B 244 544 550 HOH HOH . D 3 HOH B 245 545 552 HOH HOH . D 3 HOH B 246 546 554 HOH HOH . D 3 HOH B 247 547 557 HOH HOH . D 3 HOH B 248 548 558 HOH HOH . D 3 HOH B 249 549 559 HOH HOH . D 3 HOH B 250 550 560 HOH HOH . D 3 HOH B 251 551 561 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAS 1M1 . . . B 2 23.499 -8.545 -15.936 1 17.74 ? CAS 1M1 201 B 1 HETATM 2 C CAT 1M1 . . . B 2 22.765 -9.529 -16.475 1 18.87 ? CAT 1M1 201 B 1 HETATM 3 C CAU 1M1 . . . B 2 23.089 -10.866 -16.489 1 18.8 ? CAU 1M1 201 B 1 HETATM 4 C CAV 1M1 . . . B 2 24.205 -11.25 -15.869 1 21.3 ? CAV 1M1 201 B 1 HETATM 5 N NAW 1M1 . . . B 2 24.967 -10.279 -15.232 1 28.54 ? NAW 1M1 201 B 1 HETATM 6 C CAR 1M1 . . . B 2 24.617 -8.964 -15.295 1 17.06 ? CAR 1M1 201 B 1 HETATM 7 C CAQ 1M1 . . . B 2 25.379 -7.838 -14.619 1 16.3 ? CAQ 1M1 201 B 1 HETATM 8 N NAE 1M1 . . . B 2 24.703 -7.472 -13.348 1 17.28 ? NAE 1M1 201 B 1 HETATM 9 C CAD 1M1 . . . B 2 23.497 -6.804 -13.173 1 16.68 ? CAD 1M1 201 B 1 HETATM 10 C CAI 1M1 . . . B 2 22.665 -6.129 -14.128 1 18 ? CAI 1M1 201 B 1 HETATM 11 C CAH 1M1 . . . B 2 21.5 -5.556 -13.638 1 21.05 ? CAH 1M1 201 B 1 HETATM 12 C CAG 1M1 . . . B 2 21.196 -5.607 -12.262 1 20.23 ? CAG 1M1 201 B 1 HETATM 13 C CAF 1M1 . . . B 2 22.039 -6.289 -11.341 1 20.28 ? CAF 1M1 201 B 1 HETATM 14 C CAC 1M1 . . . B 2 23.178 -6.915 -11.873 1 17.65 ? CAC 1M1 201 B 1 HETATM 15 N NAB 1M1 . . . B 2 24.178 -7.584 -11.196 1 17.06 ? NAB 1M1 201 B 1 HETATM 16 C CAA 1M1 . . . B 2 25.042 -8.012 -12.124 1 16.72 ? CAA 1M1 201 B 1 HETATM 17 C CAJ 1M1 . . . B 2 26.274 -8.697 -11.967 1 16.36 ? CAJ 1M1 201 B 1 HETATM 18 C CAK 1M1 . . . B 2 26.666 -9.179 -10.684 1 17.13 ? CAK 1M1 201 B 1 HETATM 19 C CAL 1M1 . . . B 2 27.95 -9.747 -10.614 1 19.46 ? CAL 1M1 201 B 1 HETATM 20 C CAM 1M1 . . . B 2 28.833 -9.835 -11.723 1 17.25 ? CAM 1M1 201 B 1 HETATM 21 C CAN 1M1 . . . B 2 28.419 -9.306 -12.921 1 16.81 ? CAN 1M1 201 B 1 HETATM 22 C CAO 1M1 . . . B 2 27.157 -8.691 -13.03 1 15.72 ? CAO 1M1 201 B 1 HETATM 23 N NAP 1M1 . . . B 2 26.792 -8.153 -14.318 1 16.18 ? NAP 1M1 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #