data_4JVD # _model_server_result.job_id dDG8MRp419hgyhOwniScXQ _model_server_result.datetime_utc '2024-12-27 01:16:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JVD # _exptl.entry_id 4JVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-nonylquinolin-4(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JVD _cell.length_a 120.35 _cell.length_b 120.35 _cell.length_c 115.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 38.453333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 N O' _chem_comp.formula_weight 271.397 _chem_comp.id NNQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-nonylquinolin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAH NNQ sing 235 n n OAB CAR NNQ doub 236 n n CAF CAD NNQ doub 237 n y CAF CAT NNQ sing 238 n y CAH CAI NNQ sing 239 n n CAD CAC NNQ sing 240 n y CAR CAT NNQ sing 241 n n CAR CAG NNQ sing 242 n n CAT CAS NNQ doub 243 n y CAC CAE NNQ doub 244 n y CAI CAJ NNQ sing 245 n n CAJ CAK NNQ sing 246 n n CAG CAQ NNQ doub 247 n n CAK CAL NNQ sing 248 n n CAS CAE NNQ sing 249 n y CAS NAP NNQ sing 250 n n CAQ NAP NNQ sing 251 n n CAQ CAO NNQ sing 252 n n CAL CAM NNQ sing 253 n n CAN CAO NNQ sing 254 n n CAN CAM NNQ sing 255 n n CAA H1 NNQ sing 256 n n CAA H2 NNQ sing 257 n n CAA H3 NNQ sing 258 n n CAH H4 NNQ sing 259 n n CAH H5 NNQ sing 260 n n CAI H6 NNQ sing 261 n n CAI H7 NNQ sing 262 n n CAJ H8 NNQ sing 263 n n CAJ H9 NNQ sing 264 n n CAK H10 NNQ sing 265 n n CAK H11 NNQ sing 266 n n CAL H12 NNQ sing 267 n n CAL H13 NNQ sing 268 n n CAM H14 NNQ sing 269 n n CAM H15 NNQ sing 270 n n CAN H16 NNQ sing 271 n n CAN H17 NNQ sing 272 n n CAO H18 NNQ sing 273 n n CAO H19 NNQ sing 274 n n CAG H20 NNQ sing 275 n n CAF H21 NNQ sing 276 n n CAD H22 NNQ sing 277 n n CAC H23 NNQ sing 278 n n CAE H24 NNQ sing 279 n n NAP H25 NNQ sing 280 n n # _atom_sites.entry_id 4JVD _atom_sites.fract_transf_matrix[1][1] 0.008309 _atom_sites.fract_transf_matrix[1][2] 0.004797 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NNQ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 297 _pdbx_nonpoly_scheme.pdb_mon_id NNQ _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA NNQ . . . B 2 -41.202 55.61 7.192 1 105.77 ? CAA NNQ 401 A 1 HETATM 2 C CAH NNQ . . . B 2 -39.99 54.73 7.546 1 89.83 ? CAH NNQ 401 A 1 HETATM 3 C CAI NNQ . . . B 2 -39.399 55.181 8.863 1 85.22 ? CAI NNQ 401 A 1 HETATM 4 C CAJ NNQ . . . B 2 -38.008 54.619 8.966 1 88.74 ? CAJ NNQ 401 A 1 HETATM 5 C CAK NNQ . . . B 2 -37.06 55.713 9.391 1 83.8 ? CAK NNQ 401 A 1 HETATM 6 C CAL NNQ . . . B 2 -36.422 55.325 10.69 1 83.77 ? CAL NNQ 401 A 1 HETATM 7 C CAM NNQ . . . B 2 -36.188 56.576 11.527 1 90.96 ? CAM NNQ 401 A 1 HETATM 8 C CAN NNQ . . . B 2 -35.192 57.537 10.852 1 99.99 ? CAN NNQ 401 A 1 HETATM 9 C CAO NNQ . . . B 2 -33.725 57.361 11.267 1 92.34 ? CAO NNQ 401 A 1 HETATM 10 C CAQ NNQ . . . B 2 -32.915 58.177 10.298 1 79.81 ? CAQ NNQ 401 A 1 HETATM 11 C CAG NNQ . . . B 2 -32.307 57.553 9.235 1 84.56 ? CAG NNQ 401 A 1 HETATM 12 C CAR NNQ . . . B 2 -31.573 58.307 8.32 1 83.49 ? CAR NNQ 401 A 1 HETATM 13 O OAB NNQ . . . B 2 -31.001 57.794 7.357 1 87.06 ? OAB NNQ 401 A 1 HETATM 14 C CAT NNQ . . . B 2 -31.467 59.664 8.468 1 76.78 ? CAT NNQ 401 A 1 HETATM 15 C CAF NNQ . . . B 2 -30.726 60.371 7.538 1 77.4 ? CAF NNQ 401 A 1 HETATM 16 C CAD NNQ . . . B 2 -30.61 61.739 7.682 1 82.3 ? CAD NNQ 401 A 1 HETATM 17 C CAC NNQ . . . B 2 -31.236 62.38 8.744 1 87.25 ? CAC NNQ 401 A 1 HETATM 18 C CAE NNQ . . . B 2 -31.969 61.647 9.668 1 86.15 ? CAE NNQ 401 A 1 HETATM 19 C CAS NNQ . . . B 2 -32.09 60.282 9.525 1 74.28 ? CAS NNQ 401 A 1 HETATM 20 N NAP NNQ . . . B 2 -32.825 59.55 10.449 1 79.32 ? NAP NNQ 401 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #