data_4JVG # _model_server_result.job_id 9KEhbwi13Jm6g-9MTOC0VA _model_server_result.datetime_utc '2025-03-01 03:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 4JVG # _exptl.entry_id 4JVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.44 _cell.angle_gamma 90 _cell.entry_id 4JVG _cell.length_a 54.997 _cell.length_b 120.61 _cell.length_c 81.714 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 4JVG _atom_sites.fract_transf_matrix[1][1] 0.018183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B96 B 1 801 365 B96 B96 . F 2 B96 A 1 801 365 B96 B96 . G 2 B96 C 1 801 365 B96 B96 . H 2 B96 D 1 801 365 B96 B96 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . E 2 8.427 3.559 42.651 1 48.64 ? C1 B96 801 B 1 HETATM 2 O O1 B96 . . . E 2 8.825 4.03 41.595 1 50.24 ? O1 B96 801 B 1 HETATM 3 N N2 B96 . . . E 2 9.252 3.215 43.671 1 50.05 ? N2 B96 801 B 1 HETATM 4 C C3 B96 . . . E 2 10.57 3.493 43.729 1 50.37 ? C3 B96 801 B 1 HETATM 5 C C4 B96 . . . E 2 11.316 2.853 44.735 1 51.84 ? C4 B96 801 B 1 HETATM 6 C C5 B96 . . . E 2 12.703 3.02 44.79 1 52.12 ? C5 B96 801 B 1 HETATM 7 C C6 B96 . . . E 2 13.318 3.974 43.984 1 51.28 ? C6 B96 801 B 1 HETATM 8 C C31 B96 . . . E 2 10.714 2.023 45.675 1 51.43 ? C31 B96 801 B 1 HETATM 9 C C32 B96 . . . E 2 11.468 1.433 46.69 1 51.09 ? C32 B96 801 B 1 HETATM 10 C C33 B96 . . . E 2 12.832 1.657 46.786 1 50.03 ? C33 B96 801 B 1 HETATM 11 C C34 B96 . . . E 2 13.43 2.479 45.851 1 51.04 ? C34 B96 801 B 1 HETATM 12 C C7 B96 . . . E 2 12.601 4.488 42.901 1 49.43 ? C7 B96 801 B 1 HETATM 13 C C8 B96 . . . E 2 11.251 4.186 42.745 1 48.66 ? C8 B96 801 B 1 HETATM 14 N N9 B96 . . . E 2 7.161 3.164 42.842 1 46.13 ? N9 B96 801 B 1 HETATM 15 C C10 B96 . . . E 2 6.125 3.339 42.048 1 45.81 ? C10 B96 801 B 1 HETATM 16 C C14 B96 . . . E 2 6.351 2.897 40.802 1 45.04 ? C14 B96 801 B 1 HETATM 17 C C13 B96 . . . E 2 5.131 2.781 40.274 1 43.09 ? C13 B96 801 B 1 HETATM 18 N N12 B96 . . . E 2 4.264 2.97 41.239 1 43.17 ? N12 B96 801 B 1 HETATM 19 N N11 B96 . . . E 2 4.862 2.982 42.213 1 44.65 ? N11 B96 801 B 1 HETATM 20 C C15 B96 . . . E 2 4.277 3.428 43.322 1 41.26 ? C15 B96 801 B 1 HETATM 21 C C17 B96 . . . E 2 4.023 1.142 38.78 1 37.71 ? C17 B96 801 B 1 HETATM 22 C C18 B96 . . . E 2 3.734 3.573 38.378 1 37.2 ? C18 B96 801 B 1 HETATM 23 C C19 B96 . . . E 2 5.955 2.452 37.915 1 38.12 ? C19 B96 801 B 1 HETATM 24 C C16 B96 . . . E 2 4.716 2.493 38.826 1 38.78 ? C16 B96 801 B 1 HETATM 25 C C20 B96 . . . E 2 2.966 3.163 43.712 1 37.68 ? C20 B96 801 B 1 HETATM 26 C C21 B96 . . . E 2 2.509 3.725 44.913 1 36.27 ? C21 B96 801 B 1 HETATM 27 C C22 B96 . . . E 2 3.319 4.536 45.708 1 34.68 ? C22 B96 801 B 1 HETATM 28 C C23 B96 . . . E 2 4.622 4.801 45.313 1 35.47 ? C23 B96 801 B 1 HETATM 29 C C24 B96 . . . E 2 5.088 4.224 44.143 1 38.75 ? C24 B96 801 B 1 HETATM 30 C C25 B96 . . . E 2 2.83 5.077 46.886 1 33.88 ? C25 B96 801 B 1 HETATM 31 O O41 B96 . . . E 2 14.691 4.107 44.037 1 51.02 ? O41 B96 801 B 1 HETATM 32 C C42 B96 . . . E 2 14.965 5.186 43.164 1 51.66 ? C42 B96 801 B 1 HETATM 33 C C43 B96 . . . E 2 16.449 5.575 43.028 1 53.7 ? C43 B96 801 B 1 HETATM 34 N N44 B96 . . . E 2 17.24 4.711 42.153 1 56.38 ? N44 B96 801 B 1 HETATM 35 C C45 B96 . . . E 2 17.09 3.3 42.479 1 59.05 ? C45 B96 801 B 1 HETATM 36 C C46 B96 . . . E 2 17.941 2.465 41.515 1 62.17 ? C46 B96 801 B 1 HETATM 37 O O47 B96 . . . E 2 19.343 2.845 41.648 1 62.41 ? O47 B96 801 B 1 HETATM 38 C C48 B96 . . . E 2 19.484 4.211 41.344 1 58.69 ? C48 B96 801 B 1 HETATM 39 C C49 B96 . . . E 2 18.655 5.083 42.264 1 56.71 ? C49 B96 801 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #