data_4JVG # _model_server_result.job_id TO989DvtwfyATRSk-hvmQw _model_server_result.datetime_utc '2025-03-01 03:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 4JVG # _exptl.entry_id 4JVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.44 _cell.angle_gamma 90 _cell.entry_id 4JVG _cell.length_a 54.997 _cell.length_b 120.61 _cell.length_c 81.714 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 4JVG _atom_sites.fract_transf_matrix[1][1] 0.018183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B96 B 1 801 365 B96 B96 . F 2 B96 A 1 801 365 B96 B96 . G 2 B96 C 1 801 365 B96 B96 . H 2 B96 D 1 801 365 B96 B96 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . G 2 35.595 3.588 83.497 1 47.31 ? C1 B96 801 C 1 HETATM 2 O O1 B96 . . . G 2 35.994 4.061 82.436 1 47.48 ? O1 B96 801 C 1 HETATM 3 N N2 B96 . . . G 2 36.416 3.245 84.52 1 46.8 ? N2 B96 801 C 1 HETATM 4 C C3 B96 . . . G 2 37.726 3.543 84.572 1 46.12 ? C3 B96 801 C 1 HETATM 5 C C4 B96 . . . G 2 38.48 2.897 85.564 1 45.98 ? C4 B96 801 C 1 HETATM 6 C C5 B96 . . . G 2 39.864 3.08 85.621 1 46.76 ? C5 B96 801 C 1 HETATM 7 C C6 B96 . . . G 2 40.463 4.049 84.822 1 48.03 ? C6 B96 801 C 1 HETATM 8 C C31 B96 . . . G 2 37.884 2.051 86.497 1 44.97 ? C31 B96 801 C 1 HETATM 9 C C32 B96 . . . G 2 38.651 1.461 87.507 1 44.11 ? C32 B96 801 C 1 HETATM 10 C C33 B96 . . . G 2 40.015 1.702 87.601 1 42.78 ? C33 B96 801 C 1 HETATM 11 C C34 B96 . . . G 2 40.603 2.54 86.675 1 44.66 ? C34 B96 801 C 1 HETATM 12 C C7 B96 . . . G 2 39.745 4.569 83.748 1 45.54 ? C7 B96 801 C 1 HETATM 13 C C8 B96 . . . G 2 38.399 4.251 83.593 1 45.18 ? C8 B96 801 C 1 HETATM 14 N N9 B96 . . . G 2 34.336 3.177 83.682 1 46.88 ? N9 B96 801 C 1 HETATM 15 C C10 B96 . . . G 2 33.296 3.341 82.889 1 46.53 ? C10 B96 801 C 1 HETATM 16 C C14 B96 . . . G 2 33.536 2.879 81.647 1 45.02 ? C14 B96 801 C 1 HETATM 17 C C13 B96 . . . G 2 32.326 2.748 81.104 1 44.05 ? C13 B96 801 C 1 HETATM 18 N N12 B96 . . . G 2 31.445 2.934 82.062 1 43.27 ? N12 B96 801 C 1 HETATM 19 N N11 B96 . . . G 2 32.047 2.961 83.063 1 45.52 ? N11 B96 801 C 1 HETATM 20 C C15 B96 . . . G 2 31.462 3.424 84.162 1 42.75 ? C15 B96 801 C 1 HETATM 21 C C17 B96 . . . G 2 31.773 0.938 79.49 1 41.56 ? C17 B96 801 C 1 HETATM 22 C C18 B96 . . . G 2 30.616 3.153 79.361 1 37.16 ? C18 B96 801 C 1 HETATM 23 C C19 B96 . . . G 2 33.005 2.938 78.674 1 42.65 ? C19 B96 801 C 1 HETATM 24 C C16 B96 . . . G 2 31.933 2.447 79.653 1 39.67 ? C16 B96 801 C 1 HETATM 25 C C20 B96 . . . G 2 30.177 3.131 84.607 1 40.76 ? C20 B96 801 C 1 HETATM 26 C C21 B96 . . . G 2 29.75 3.728 85.801 1 39.64 ? C21 B96 801 C 1 HETATM 27 C C22 B96 . . . G 2 30.569 4.587 86.541 1 37.99 ? C22 B96 801 C 1 HETATM 28 C C23 B96 . . . G 2 31.849 4.865 86.098 1 38.44 ? C23 B96 801 C 1 HETATM 29 C C24 B96 . . . G 2 32.285 4.248 84.939 1 40.42 ? C24 B96 801 C 1 HETATM 30 C C25 B96 . . . G 2 30.121 5.164 87.72 1 36.86 ? C25 B96 801 C 1 HETATM 31 O O41 B96 . . . G 2 41.827 4.199 84.878 1 49.91 ? O41 B96 801 C 1 HETATM 32 C C42 B96 . . . G 2 42.084 5.286 84.016 1 50.65 ? C42 B96 801 C 1 HETATM 33 C C43 B96 . . . G 2 43.566 5.664 83.896 1 52.82 ? C43 B96 801 C 1 HETATM 34 N N44 B96 . . . G 2 44.331 4.767 83.036 1 55.63 ? N44 B96 801 C 1 HETATM 35 C C45 B96 . . . G 2 44.142 3.364 83.385 1 56.07 ? C45 B96 801 C 1 HETATM 36 C C46 B96 . . . G 2 44.966 2.488 82.444 1 58.71 ? C46 B96 801 C 1 HETATM 37 O O47 B96 . . . G 2 46.379 2.831 82.567 1 61.19 ? O47 B96 801 C 1 HETATM 38 C C48 B96 . . . G 2 46.557 4.19 82.232 1 59.72 ? C48 B96 801 C 1 HETATM 39 C C49 B96 . . . G 2 45.753 5.102 83.144 1 57.59 ? C49 B96 801 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #