data_4JWH # _model_server_result.job_id tITXPR02EodAzprwTQDbKQ _model_server_result.datetime_utc '2025-02-20 15:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4JWH # _exptl.entry_id 4JWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.18 _cell.angle_gamma 90 _cell.entry_id 4JWH _cell.length_a 57.825 _cell.length_b 45.653 _cell.length_c 66.412 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 4JWH _atom_sites.fract_transf_matrix[1][1] 0.017294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 2 SAH B 1 401 1 SAH SAH . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 2 HOH HOH . E 3 HOH A 3 503 3 HOH HOH . E 3 HOH A 4 504 5 HOH HOH . E 3 HOH A 5 505 6 HOH HOH . E 3 HOH A 6 506 7 HOH HOH . E 3 HOH A 7 507 11 HOH HOH . E 3 HOH A 8 508 12 HOH HOH . E 3 HOH A 9 509 13 HOH HOH . E 3 HOH A 10 510 14 HOH HOH . E 3 HOH A 11 511 15 HOH HOH . E 3 HOH A 12 512 17 HOH HOH . E 3 HOH A 13 513 18 HOH HOH . E 3 HOH A 14 514 19 HOH HOH . E 3 HOH A 15 515 23 HOH HOH . E 3 HOH A 16 516 25 HOH HOH . E 3 HOH A 17 517 27 HOH HOH . E 3 HOH A 18 518 28 HOH HOH . E 3 HOH A 19 519 29 HOH HOH . E 3 HOH A 20 520 30 HOH HOH . E 3 HOH A 21 521 34 HOH HOH . E 3 HOH A 22 522 36 HOH HOH . E 3 HOH A 23 523 37 HOH HOH . E 3 HOH A 24 524 38 HOH HOH . E 3 HOH A 25 525 39 HOH HOH . E 3 HOH A 26 526 40 HOH HOH . E 3 HOH A 27 527 41 HOH HOH . E 3 HOH A 28 528 42 HOH HOH . E 3 HOH A 29 529 44 HOH HOH . E 3 HOH A 30 530 45 HOH HOH . E 3 HOH A 31 531 46 HOH HOH . E 3 HOH A 32 532 52 HOH HOH . E 3 HOH A 33 533 54 HOH HOH . E 3 HOH A 34 534 56 HOH HOH . E 3 HOH A 35 535 57 HOH HOH . E 3 HOH A 36 536 58 HOH HOH . E 3 HOH A 37 537 59 HOH HOH . E 3 HOH A 38 538 60 HOH HOH . E 3 HOH A 39 539 61 HOH HOH . E 3 HOH A 40 540 64 HOH HOH . E 3 HOH A 41 541 65 HOH HOH . E 3 HOH A 42 542 66 HOH HOH . E 3 HOH A 43 543 68 HOH HOH . E 3 HOH A 44 544 72 HOH HOH . E 3 HOH A 45 545 74 HOH HOH . E 3 HOH A 46 546 75 HOH HOH . E 3 HOH A 47 547 76 HOH HOH . E 3 HOH A 48 548 77 HOH HOH . E 3 HOH A 49 549 78 HOH HOH . E 3 HOH A 50 550 80 HOH HOH . E 3 HOH A 51 551 81 HOH HOH . E 3 HOH A 52 552 83 HOH HOH . E 3 HOH A 53 553 86 HOH HOH . E 3 HOH A 54 554 88 HOH HOH . E 3 HOH A 55 555 91 HOH HOH . E 3 HOH A 56 556 93 HOH HOH . E 3 HOH A 57 557 95 HOH HOH . E 3 HOH A 58 558 96 HOH HOH . E 3 HOH A 59 559 98 HOH HOH . E 3 HOH A 60 560 99 HOH HOH . E 3 HOH A 61 561 100 HOH HOH . E 3 HOH A 62 562 101 HOH HOH . E 3 HOH A 63 563 102 HOH HOH . E 3 HOH A 64 564 105 HOH HOH . E 3 HOH A 65 565 106 HOH HOH . E 3 HOH A 66 566 107 HOH HOH . E 3 HOH A 67 567 108 HOH HOH . E 3 HOH A 68 568 111 HOH HOH . E 3 HOH A 69 569 112 HOH HOH . E 3 HOH A 70 570 113 HOH HOH . E 3 HOH A 71 571 114 HOH HOH . E 3 HOH A 72 572 115 HOH HOH . E 3 HOH A 73 573 116 HOH HOH . E 3 HOH A 74 574 117 HOH HOH . E 3 HOH A 75 575 119 HOH HOH . E 3 HOH A 76 576 120 HOH HOH . E 3 HOH A 77 577 126 HOH HOH . E 3 HOH A 78 578 127 HOH HOH . E 3 HOH A 79 579 128 HOH HOH . E 3 HOH A 80 580 129 HOH HOH . E 3 HOH A 81 581 130 HOH HOH . E 3 HOH A 82 582 132 HOH HOH . E 3 HOH A 83 583 133 HOH HOH . E 3 HOH A 84 584 134 HOH HOH . E 3 HOH A 85 585 136 HOH HOH . E 3 HOH A 86 586 137 HOH HOH . E 3 HOH A 87 587 140 HOH HOH . E 3 HOH A 88 588 141 HOH HOH . E 3 HOH A 89 589 144 HOH HOH . E 3 HOH A 90 590 145 HOH HOH . E 3 HOH A 91 591 146 HOH HOH . E 3 HOH A 92 592 147 HOH HOH . F 3 HOH B 1 501 4 HOH HOH . F 3 HOH B 2 502 8 HOH HOH . F 3 HOH B 3 503 9 HOH HOH . F 3 HOH B 4 504 10 HOH HOH . F 3 HOH B 5 505 16 HOH HOH . F 3 HOH B 6 506 20 HOH HOH . F 3 HOH B 7 507 21 HOH HOH . F 3 HOH B 8 508 22 HOH HOH . F 3 HOH B 9 509 24 HOH HOH . F 3 HOH B 10 510 26 HOH HOH . F 3 HOH B 11 511 31 HOH HOH . F 3 HOH B 12 512 32 HOH HOH . F 3 HOH B 13 513 33 HOH HOH . F 3 HOH B 14 514 35 HOH HOH . F 3 HOH B 15 515 43 HOH HOH . F 3 HOH B 16 516 47 HOH HOH . F 3 HOH B 17 517 48 HOH HOH . F 3 HOH B 18 518 49 HOH HOH . F 3 HOH B 19 519 50 HOH HOH . F 3 HOH B 20 520 51 HOH HOH . F 3 HOH B 21 521 53 HOH HOH . F 3 HOH B 22 522 55 HOH HOH . F 3 HOH B 23 523 62 HOH HOH . F 3 HOH B 24 524 63 HOH HOH . F 3 HOH B 25 525 67 HOH HOH . F 3 HOH B 26 526 69 HOH HOH . F 3 HOH B 27 527 70 HOH HOH . F 3 HOH B 28 528 71 HOH HOH . F 3 HOH B 29 529 73 HOH HOH . F 3 HOH B 30 530 79 HOH HOH . F 3 HOH B 31 531 82 HOH HOH . F 3 HOH B 32 532 84 HOH HOH . F 3 HOH B 33 533 85 HOH HOH . F 3 HOH B 34 534 87 HOH HOH . F 3 HOH B 35 535 89 HOH HOH . F 3 HOH B 36 536 90 HOH HOH . F 3 HOH B 37 537 92 HOH HOH . F 3 HOH B 38 538 94 HOH HOH . F 3 HOH B 39 539 97 HOH HOH . F 3 HOH B 40 540 103 HOH HOH . F 3 HOH B 41 541 104 HOH HOH . F 3 HOH B 42 542 109 HOH HOH . F 3 HOH B 43 543 110 HOH HOH . F 3 HOH B 44 544 118 HOH HOH . F 3 HOH B 45 545 121 HOH HOH . F 3 HOH B 46 546 122 HOH HOH . F 3 HOH B 47 547 123 HOH HOH . F 3 HOH B 48 548 124 HOH HOH . F 3 HOH B 49 549 125 HOH HOH . F 3 HOH B 50 550 131 HOH HOH . F 3 HOH B 51 551 135 HOH HOH . F 3 HOH B 52 552 138 HOH HOH . F 3 HOH B 53 553 139 HOH HOH . F 3 HOH B 54 554 142 HOH HOH . F 3 HOH B 55 555 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 14.399 -0.815 17.197 1 20 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . C 2 14.454 -1.06 15.764 1 20 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . C 2 13.297 -2.045 15.449 1 20 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . C 2 12.622 -1.703 14.187 1 20 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . C 2 11.375 -2.648 13.402 1 20 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . C 2 14.592 0.292 15.077 1 20 ? C SAH 401 A 1 HETATM 7 O O SAH . . . C 2 14.154 0.598 14.009 1 20 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . C 2 15.251 1.141 15.599 1 20 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . C 2 12.062 -2.858 11.809 1 20 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . C 2 11.948 -1.704 10.819 1 20 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . C 2 10.636 -1.455 10.418 1 20 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . C 2 12.5 -0.343 11.261 1 20 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . C 2 13.889 -0.254 11.133 1 20 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . C 2 11.769 0.63 10.403 1 20 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . C 2 12.463 0.755 9.204 1 20 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . C 2 10.455 -0.083 10.223 1 20 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . C 2 9.375 0.459 11.065 1 20 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . C 2 8.718 -0.183 11.989 1 20 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . C 2 7.764 0.537 12.518 1 20 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . C 2 7.775 1.674 11.894 1 20 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . C 2 7.02 2.927 11.947 1 20 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . C 2 6.046 3.077 12.807 1 20 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . C 2 7.354 3.885 11.117 1 20 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . C 2 8.336 3.738 10.246 1 20 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . C 2 9.067 2.657 10.149 1 20 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . C 2 8.839 1.604 10.924 1 20 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #