data_4JXE # _model_server_result.job_id FOpAIRSgyCxNNdp_L5bEmQ _model_server_result.datetime_utc '2024-10-12 12:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 4JXE # _exptl.entry_id 4JXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.84 _cell.angle_gamma 90 _cell.entry_id 4JXE _cell.length_a 56.139 _cell.length_b 69.436 _cell.length_c 62.018 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,O 1 1 B,G,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 103 A HIS 341 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A NE2 HIS 105 A HIS 343 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 A OD2 ASP 116 A ASP 354 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc4 A NE2 HIS 118 A HIS 356 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 A SG CYS 159 A CYS 397 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A NE2 HIS 166 A HIS 404 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc7 A NE2 HIS 168 A HIS 406 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc8 C ZN ZN . A ZN 501 1_555 O O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc9 B NE2 HIS 103 B HIS 341 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc10 B NE2 HIS 105 B HIS 343 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc11 B OD2 ASP 116 B ASP 354 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc12 B NE2 HIS 118 B HIS 356 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc13 B SG CYS 159 B CYS 397 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B NE2 HIS 166 B HIS 404 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc15 B NE2 HIS 168 B HIS 406 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc16 G ZN ZN . B ZN 501 1_555 P O HOH . B HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4JXE _atom_sites.fract_transf_matrix[1][1] 0.017813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 3 ZN ZN . D 2 ZN A 1 502 4 ZN ZN . E 3 EDO A 1 503 1 EDO EDO . F 3 EDO A 1 504 2 EDO EDO . G 2 ZN B 1 501 1 ZN ZN . H 2 ZN B 1 502 2 ZN ZN . I 3 EDO B 1 503 3 EDO EDO . J 3 EDO B 1 504 4 EDO EDO . K 3 EDO B 1 505 5 EDO EDO . L 3 EDO B 1 506 6 EDO EDO . M 4 TRS B 1 507 1 TRS TRS . N 4 TRS B 1 508 2 TRS TRS . O 5 HOH A 1 601 3 HOH HOH . O 5 HOH A 2 602 4 HOH HOH . O 5 HOH A 3 603 6 HOH HOH . O 5 HOH A 4 604 18 HOH HOH . O 5 HOH A 5 605 34 HOH HOH . O 5 HOH A 6 606 39 HOH HOH . O 5 HOH A 7 607 47 HOH HOH . O 5 HOH A 8 608 55 HOH HOH . O 5 HOH A 9 609 58 HOH HOH . O 5 HOH A 10 610 91 HOH HOH . O 5 HOH A 11 611 98 HOH HOH . O 5 HOH A 12 612 101 HOH HOH . O 5 HOH A 13 613 272 HOH HOH . O 5 HOH A 14 614 273 HOH HOH . O 5 HOH A 15 615 274 HOH HOH . O 5 HOH A 16 616 291 HOH HOH . O 5 HOH A 17 617 412 HOH HOH . O 5 HOH A 18 618 430 HOH HOH . O 5 HOH A 19 619 448 HOH HOH . O 5 HOH A 20 620 457 HOH HOH . O 5 HOH A 21 621 462 HOH HOH . O 5 HOH A 22 622 464 HOH HOH . O 5 HOH A 23 623 467 HOH HOH . O 5 HOH A 24 624 469 HOH HOH . O 5 HOH A 25 625 470 HOH HOH . O 5 HOH A 26 626 471 HOH HOH . O 5 HOH A 27 627 475 HOH HOH . O 5 HOH A 28 628 479 HOH HOH . O 5 HOH A 29 629 480 HOH HOH . O 5 HOH A 30 630 483 HOH HOH . O 5 HOH A 31 631 485 HOH HOH . O 5 HOH A 32 632 486 HOH HOH . O 5 HOH A 33 633 487 HOH HOH . O 5 HOH A 34 634 488 HOH HOH . O 5 HOH A 35 635 490 HOH HOH . O 5 HOH A 36 636 491 HOH HOH . O 5 HOH A 37 637 493 HOH HOH . O 5 HOH A 38 638 496 HOH HOH . O 5 HOH A 39 639 500 HOH HOH . O 5 HOH A 40 640 501 HOH HOH . O 5 HOH A 41 641 503 HOH HOH . O 5 HOH A 42 642 505 HOH HOH . O 5 HOH A 43 643 506 HOH HOH . O 5 HOH A 44 644 510 HOH HOH . O 5 HOH A 45 645 513 HOH HOH . O 5 HOH A 46 646 516 HOH HOH . O 5 HOH A 47 647 522 HOH HOH . O 5 HOH A 48 648 523 HOH HOH . O 5 HOH A 49 649 525 HOH HOH . O 5 HOH A 50 650 526 HOH HOH . O 5 HOH A 51 651 528 HOH HOH . O 5 HOH A 52 652 530 HOH HOH . O 5 HOH A 53 653 533 HOH HOH . O 5 HOH A 54 654 534 HOH HOH . O 5 HOH A 55 655 535 HOH HOH . O 5 HOH A 56 656 543 HOH HOH . O 5 HOH A 57 657 544 HOH HOH . O 5 HOH A 58 658 545 HOH HOH . O 5 HOH A 59 659 546 HOH HOH . O 5 HOH A 60 660 556 HOH HOH . O 5 HOH A 61 661 557 HOH HOH . O 5 HOH A 62 662 558 HOH HOH . O 5 HOH A 63 663 559 HOH HOH . O 5 HOH A 64 664 562 HOH HOH . O 5 HOH A 65 665 563 HOH HOH . O 5 HOH A 66 666 564 HOH HOH . O 5 HOH A 67 667 565 HOH HOH . O 5 HOH A 68 668 566 HOH HOH . O 5 HOH A 69 669 569 HOH HOH . O 5 HOH A 70 670 570 HOH HOH . O 5 HOH A 71 671 575 HOH HOH . O 5 HOH A 72 672 576 HOH HOH . O 5 HOH A 73 673 578 HOH HOH . O 5 HOH A 74 674 580 HOH HOH . O 5 HOH A 75 675 581 HOH HOH . O 5 HOH A 76 676 583 HOH HOH . O 5 HOH A 77 677 584 HOH HOH . O 5 HOH A 78 678 589 HOH HOH . O 5 HOH A 79 679 593 HOH HOH . O 5 HOH A 80 680 594 HOH HOH . O 5 HOH A 81 681 596 HOH HOH . O 5 HOH A 82 682 597 HOH HOH . O 5 HOH A 83 683 598 HOH HOH . O 5 HOH A 84 684 600 HOH HOH . O 5 HOH A 85 685 605 HOH HOH . O 5 HOH A 86 686 606 HOH HOH . O 5 HOH A 87 687 608 HOH HOH . O 5 HOH A 88 688 610 HOH HOH . O 5 HOH A 89 689 611 HOH HOH . O 5 HOH A 90 690 614 HOH HOH . O 5 HOH A 91 691 616 HOH HOH . O 5 HOH A 92 692 618 HOH HOH . O 5 HOH A 93 693 619 HOH HOH . O 5 HOH A 94 694 622 HOH HOH . O 5 HOH A 95 695 623 HOH HOH . O 5 HOH A 96 696 624 HOH HOH . O 5 HOH A 97 697 625 HOH HOH . O 5 HOH A 98 698 626 HOH HOH . O 5 HOH A 99 699 628 HOH HOH . O 5 HOH A 100 700 632 HOH HOH . O 5 HOH A 101 701 634 HOH HOH . O 5 HOH A 102 702 637 HOH HOH . O 5 HOH A 103 703 641 HOH HOH . O 5 HOH A 104 704 642 HOH HOH . O 5 HOH A 105 705 643 HOH HOH . O 5 HOH A 106 706 644 HOH HOH . O 5 HOH A 107 707 646 HOH HOH . O 5 HOH A 108 708 651 HOH HOH . O 5 HOH A 109 709 654 HOH HOH . O 5 HOH A 110 710 655 HOH HOH . O 5 HOH A 111 711 660 HOH HOH . P 5 HOH B 1 601 10 HOH HOH . P 5 HOH B 2 602 12 HOH HOH . P 5 HOH B 3 603 13 HOH HOH . P 5 HOH B 4 604 19 HOH HOH . P 5 HOH B 5 605 30 HOH HOH . P 5 HOH B 6 606 41 HOH HOH . P 5 HOH B 7 607 242 HOH HOH . P 5 HOH B 8 608 275 HOH HOH . P 5 HOH B 9 609 340 HOH HOH . P 5 HOH B 10 610 409 HOH HOH . P 5 HOH B 11 611 446 HOH HOH . P 5 HOH B 12 612 463 HOH HOH . P 5 HOH B 13 613 468 HOH HOH . P 5 HOH B 14 614 472 HOH HOH . P 5 HOH B 15 615 473 HOH HOH . P 5 HOH B 16 616 476 HOH HOH . P 5 HOH B 17 617 477 HOH HOH . P 5 HOH B 18 618 478 HOH HOH . P 5 HOH B 19 619 481 HOH HOH . P 5 HOH B 20 620 482 HOH HOH . P 5 HOH B 21 621 484 HOH HOH . P 5 HOH B 22 622 489 HOH HOH . P 5 HOH B 23 623 492 HOH HOH . P 5 HOH B 24 624 494 HOH HOH . P 5 HOH B 25 625 495 HOH HOH . P 5 HOH B 26 626 498 HOH HOH . P 5 HOH B 27 627 499 HOH HOH . P 5 HOH B 28 628 502 HOH HOH . P 5 HOH B 29 629 507 HOH HOH . P 5 HOH B 30 630 508 HOH HOH . P 5 HOH B 31 631 509 HOH HOH . P 5 HOH B 32 632 511 HOH HOH . P 5 HOH B 33 633 512 HOH HOH . P 5 HOH B 34 634 517 HOH HOH . P 5 HOH B 35 635 518 HOH HOH . P 5 HOH B 36 636 519 HOH HOH . P 5 HOH B 37 637 524 HOH HOH . P 5 HOH B 38 638 527 HOH HOH . P 5 HOH B 39 639 529 HOH HOH . P 5 HOH B 40 640 531 HOH HOH . P 5 HOH B 41 641 532 HOH HOH . P 5 HOH B 42 642 536 HOH HOH . P 5 HOH B 43 643 537 HOH HOH . P 5 HOH B 44 644 538 HOH HOH . P 5 HOH B 45 645 540 HOH HOH . P 5 HOH B 46 646 541 HOH HOH . P 5 HOH B 47 647 542 HOH HOH . P 5 HOH B 48 648 548 HOH HOH . P 5 HOH B 49 649 549 HOH HOH . P 5 HOH B 50 650 550 HOH HOH . P 5 HOH B 51 651 551 HOH HOH . P 5 HOH B 52 652 552 HOH HOH . P 5 HOH B 53 653 553 HOH HOH . P 5 HOH B 54 654 554 HOH HOH . P 5 HOH B 55 655 555 HOH HOH . P 5 HOH B 56 656 560 HOH HOH . P 5 HOH B 57 657 561 HOH HOH . P 5 HOH B 58 658 567 HOH HOH . P 5 HOH B 59 659 568 HOH HOH . P 5 HOH B 60 660 571 HOH HOH . P 5 HOH B 61 661 572 HOH HOH . P 5 HOH B 62 662 573 HOH HOH . P 5 HOH B 63 663 574 HOH HOH . P 5 HOH B 64 664 577 HOH HOH . P 5 HOH B 65 665 582 HOH HOH . P 5 HOH B 66 666 585 HOH HOH . P 5 HOH B 67 667 586 HOH HOH . P 5 HOH B 68 668 587 HOH HOH . P 5 HOH B 69 669 588 HOH HOH . P 5 HOH B 70 670 590 HOH HOH . P 5 HOH B 71 671 591 HOH HOH . P 5 HOH B 72 672 592 HOH HOH . P 5 HOH B 73 673 595 HOH HOH . P 5 HOH B 74 674 599 HOH HOH . P 5 HOH B 75 675 601 HOH HOH . P 5 HOH B 76 676 604 HOH HOH . P 5 HOH B 77 677 609 HOH HOH . P 5 HOH B 78 678 612 HOH HOH . P 5 HOH B 79 679 613 HOH HOH . P 5 HOH B 80 680 615 HOH HOH . P 5 HOH B 81 681 617 HOH HOH . P 5 HOH B 82 682 620 HOH HOH . P 5 HOH B 83 683 621 HOH HOH . P 5 HOH B 84 684 629 HOH HOH . P 5 HOH B 85 685 630 HOH HOH . P 5 HOH B 86 686 631 HOH HOH . P 5 HOH B 87 687 633 HOH HOH . P 5 HOH B 88 688 635 HOH HOH . P 5 HOH B 89 689 636 HOH HOH . P 5 HOH B 90 690 639 HOH HOH . P 5 HOH B 91 691 640 HOH HOH . P 5 HOH B 92 692 645 HOH HOH . P 5 HOH B 93 693 647 HOH HOH . P 5 HOH B 94 694 648 HOH HOH . P 5 HOH B 95 695 649 HOH HOH . P 5 HOH B 96 696 650 HOH HOH . P 5 HOH B 97 697 652 HOH HOH . P 5 HOH B 98 698 653 HOH HOH . P 5 HOH B 99 699 656 HOH HOH . P 5 HOH B 100 700 657 HOH HOH . P 5 HOH B 101 701 658 HOH HOH . P 5 HOH B 102 702 659 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 12.716 -29.567 -6.986 1 38.43 ? C1 EDO 504 B 1 HETATM 2 O O1 EDO . . . J 3 11.437 -29.884 -7.552 1 35.31 ? O1 EDO 504 B 1 HETATM 3 C C2 EDO . . . J 3 13.236 -28.286 -7.624 1 36.6 ? C2 EDO 504 B 1 HETATM 4 O O2 EDO . . . J 3 12.319 -27.222 -7.353 1 35.69 ? O2 EDO 504 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #