data_4JXF # _model_server_result.job_id j6PpI_tGMQFqMbXd0s6RGA _model_server_result.datetime_utc '2024-10-19 17:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4JXF # _exptl.entry_id 4JXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.558 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1R,2S)-2-{3-[(E)-2-{4-[(dimethylamino)methyl]phenyl}ethenyl]-2H-indazol-6-yl}-5'-methoxyspiro[cyclopropane-1,3'-indol]-2'(1'H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JXF _cell.length_a 127.571 _cell.length_b 127.571 _cell.length_c 127.571 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H28 N4 O2' _chem_comp.formula_weight 464.558 _chem_comp.id 631 _chem_comp.mon_nstd_flag . _chem_comp.name "(1R,2S)-2-{3-[(E)-2-{4-[(dimethylamino)methyl]phenyl}ethenyl]-2H-indazol-6-yl}-5'-methoxyspiro[cyclopropane-1,3'-indol]-2'(1'H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N07 C06 631 sing 1 n n N07 C08 631 sing 2 n n C05 C06 631 doub 3 n y C05 C04 631 sing 4 n y O09 C08 631 doub 5 n n C06 C34 631 sing 6 n y C08 C10 631 sing 7 n n C04 C03 631 doub 8 n y C34 C10 631 sing 9 n n C34 C35 631 doub 10 n y C10 C12 631 sing 11 n n C10 C11 631 sing 12 n n C03 C35 631 sing 13 n y C03 O02 631 sing 14 n n C12 C11 631 sing 15 n n C12 C13 631 sing 16 n n C01 O02 631 sing 17 n n C14 C13 631 sing 18 n y C14 C15 631 doub 19 n y C13 C33 631 doub 20 n y C15 C16 631 sing 21 n y C33 C32 631 sing 22 n y C29 C28 631 doub 23 n y C29 C20 631 sing 24 n y C28 C23 631 sing 25 n y C16 C32 631 sing 26 n y C16 C17 631 doub 27 n y C27 N25 631 sing 28 n n C32 N31 631 doub 29 n y C19 C20 631 sing 30 n n C19 C18 631 doub 31 e n C20 C21 631 doub 32 n y C23 C24 631 sing 33 n n C23 C22 631 doub 34 n y C24 N25 631 sing 35 n n C17 C18 631 sing 36 n n C17 N30 631 sing 37 n y N25 C26 631 sing 38 n n N31 N30 631 sing 39 n y C21 C22 631 sing 40 n y C01 H1 631 sing 41 n n C01 H2 631 sing 42 n n C01 H3 631 sing 43 n n C04 H4 631 sing 44 n n C05 H5 631 sing 45 n n N07 H6 631 sing 46 n n C11 H7 631 sing 47 n n C11 H8 631 sing 48 n n C12 H9 631 sing 49 n n C14 H10 631 sing 50 n n C15 H11 631 sing 51 n n C18 H12 631 sing 52 n n C19 H13 631 sing 53 n n C21 H14 631 sing 54 n n C22 H15 631 sing 55 n n C24 H16 631 sing 56 n n C24 H17 631 sing 57 n n C26 H19 631 sing 58 n n C26 H20 631 sing 59 n n C26 H21 631 sing 60 n n C27 H22 631 sing 61 n n C27 H23 631 sing 62 n n C27 H24 631 sing 63 n n C28 H25 631 sing 64 n n C29 H26 631 sing 65 n n N30 H27 631 sing 66 n n C33 H28 631 sing 67 n n C35 H29 631 sing 68 n n # _atom_sites.entry_id 4JXF _atom_sites.fract_transf_matrix[1][1] 0.007839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 631 A 1 301 1 631 631 . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 17 HOH HOH . E 4 HOH A 18 418 18 HOH HOH . E 4 HOH A 19 419 19 HOH HOH . E 4 HOH A 20 420 20 HOH HOH . E 4 HOH A 21 421 21 HOH HOH . E 4 HOH A 22 422 22 HOH HOH . E 4 HOH A 23 423 23 HOH HOH . E 4 HOH A 24 424 24 HOH HOH . E 4 HOH A 25 425 25 HOH HOH . E 4 HOH A 26 426 26 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 28 HOH HOH . E 4 HOH A 29 429 29 HOH HOH . E 4 HOH A 30 430 30 HOH HOH . E 4 HOH A 31 431 31 HOH HOH . E 4 HOH A 32 432 32 HOH HOH . E 4 HOH A 33 433 33 HOH HOH . E 4 HOH A 34 434 34 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 36 HOH HOH . E 4 HOH A 37 437 37 HOH HOH . E 4 HOH A 38 438 38 HOH HOH . E 4 HOH A 39 439 39 HOH HOH . E 4 HOH A 40 440 41 HOH HOH . E 4 HOH A 41 441 42 HOH HOH . E 4 HOH A 42 442 45 HOH HOH . E 4 HOH A 43 443 46 HOH HOH . E 4 HOH A 44 444 47 HOH HOH . E 4 HOH A 45 445 48 HOH HOH . E 4 HOH A 46 446 49 HOH HOH . E 4 HOH A 47 447 50 HOH HOH . E 4 HOH A 48 448 51 HOH HOH . E 4 HOH A 49 449 52 HOH HOH . E 4 HOH A 50 450 53 HOH HOH . E 4 HOH A 51 451 54 HOH HOH . E 4 HOH A 52 452 55 HOH HOH . E 4 HOH A 53 453 56 HOH HOH . E 4 HOH A 54 454 57 HOH HOH . E 4 HOH A 55 455 58 HOH HOH . E 4 HOH A 56 456 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 631 . . . B 2 24.67 -18.558 -49.074 1 38.64 ? C01 631 301 A 1 HETATM 2 O O02 631 . . . B 2 25.963 -18.029 -48.86 1 37.9 ? O02 631 301 A 1 HETATM 3 C C03 631 . . . B 2 26.993 -18.013 -49.835 1 35.94 ? C03 631 301 A 1 HETATM 4 C C04 631 . . . B 2 26.744 -17.645 -51.19 1 34.88 ? C04 631 301 A 1 HETATM 5 C C05 631 . . . B 2 27.809 -17.609 -52.113 1 34.92 ? C05 631 301 A 1 HETATM 6 C C06 631 . . . B 2 29.133 -17.911 -51.682 1 35.54 ? C06 631 301 A 1 HETATM 7 N N07 631 . . . B 2 30.36 -17.967 -52.419 1 36.84 ? N07 631 301 A 1 HETATM 8 C C08 631 . . . B 2 31.416 -18.297 -51.524 1 36.84 ? C08 631 301 A 1 HETATM 9 O O09 631 . . . B 2 32.635 -18.428 -51.851 1 37.98 ? O09 631 301 A 1 HETATM 10 C C10 631 . . . B 2 30.861 -18.534 -50.259 1 36.3 ? C10 631 301 A 1 HETATM 11 C C11 631 . . . B 2 31.547 -18.027 -49.008 1 35.83 ? C11 631 301 A 1 HETATM 12 C C12 631 . . . B 2 31.514 -19.52 -49.3 1 35.8 ? C12 631 301 A 1 HETATM 13 C C13 631 . . . B 2 30.779 -20.386 -48.216 1 35.59 ? C13 631 301 A 1 HETATM 14 C C14 631 . . . B 2 29.813 -21.334 -48.615 1 35.41 ? C14 631 301 A 1 HETATM 15 C C15 631 . . . B 2 29.14 -22.102 -47.654 1 35.26 ? C15 631 301 A 1 HETATM 16 C C16 631 . . . B 2 29.457 -21.942 -46.271 1 35.5 ? C16 631 301 A 1 HETATM 17 C C17 631 . . . B 2 28.965 -22.586 -45.055 1 35.99 ? C17 631 301 A 1 HETATM 18 C C18 631 . . . B 2 27.901 -23.616 -44.9 1 37.05 ? C18 631 301 A 1 HETATM 19 C C19 631 . . . B 2 27.57 -24.535 -45.864 1 38.07 ? C19 631 301 A 1 HETATM 20 C C20 631 . . . B 2 26.461 -25.581 -45.626 1 39.57 ? C20 631 301 A 1 HETATM 21 C C21 631 . . . B 2 26.058 -25.983 -44.291 1 40.21 ? C21 631 301 A 1 HETATM 22 C C22 631 . . . B 2 25.028 -26.955 -44.109 1 41.18 ? C22 631 301 A 1 HETATM 23 C C23 631 . . . B 2 24.41 -27.545 -45.245 1 42.53 ? C23 631 301 A 1 HETATM 24 C C24 631 . . . B 2 23.317 -28.59 -45.07 1 44.92 ? C24 631 301 A 1 HETATM 25 N N25 631 . . . B 2 21.9 -28.133 -44.88 1 47.47 ? N25 631 301 A 1 HETATM 26 C C26 631 . . . B 2 21.086 -29.198 -44.328 1 47.9 ? C26 631 301 A 1 HETATM 27 C C27 631 . . . B 2 21.317 -27.708 -46.121 1 48.44 ? C27 631 301 A 1 HETATM 28 C C28 631 . . . B 2 24.817 -27.16 -46.567 1 41.7 ? C28 631 301 A 1 HETATM 29 C C29 631 . . . B 2 25.846 -26.168 -46.751 1 40.69 ? C29 631 301 A 1 HETATM 30 N N30 631 . . . B 2 29.613 -22.019 -44.038 1 35.72 ? N30 631 301 A 1 HETATM 31 N N31 631 . . . B 2 30.486 -21.065 -44.507 1 35.56 ? N31 631 301 A 1 HETATM 32 C C32 631 . . . B 2 30.404 -21.033 -45.892 1 35.66 ? C32 631 301 A 1 HETATM 33 C C33 631 . . . B 2 31.087 -20.233 -46.876 1 35.58 ? C33 631 301 A 1 HETATM 34 C C34 631 . . . B 2 29.409 -18.26 -50.355 1 35.59 ? C34 631 301 A 1 HETATM 35 C C35 631 . . . B 2 28.304 -18.302 -49.42 1 35.21 ? C35 631 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #