data_4JXK # _model_server_result.job_id yorW4fwjfdnJq-lloKa3KA _model_server_result.datetime_utc '2024-12-06 14:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4JXK # _exptl.entry_id 4JXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JXK _cell.length_a 94.333 _cell.length_b 94.333 _cell.length_c 150.159 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4JXK _atom_sites.fract_transf_matrix[1][1] 0.010601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 2 EDO EDO . D 2 EDO A 1 402 3 EDO EDO . E 3 CL B 1 401 1 CL CL . F 2 EDO B 1 402 1 EDO EDO . G 4 HOH A 1 501 1 HOH HOH . G 4 HOH A 2 502 2 HOH HOH . G 4 HOH A 3 503 3 HOH HOH . G 4 HOH A 4 504 5 HOH HOH . G 4 HOH A 5 505 6 HOH HOH . G 4 HOH A 6 506 8 HOH HOH . G 4 HOH A 7 507 9 HOH HOH . G 4 HOH A 8 508 10 HOH HOH . G 4 HOH A 9 509 11 HOH HOH . G 4 HOH A 10 510 12 HOH HOH . G 4 HOH A 11 511 16 HOH HOH . G 4 HOH A 12 512 18 HOH HOH . G 4 HOH A 13 513 25 HOH HOH . G 4 HOH A 14 514 27 HOH HOH . G 4 HOH A 15 515 29 HOH HOH . G 4 HOH A 16 516 30 HOH HOH . G 4 HOH A 17 517 31 HOH HOH . G 4 HOH A 18 518 32 HOH HOH . G 4 HOH A 19 519 34 HOH HOH . G 4 HOH A 20 520 35 HOH HOH . G 4 HOH A 21 521 38 HOH HOH . G 4 HOH A 22 522 39 HOH HOH . G 4 HOH A 23 523 40 HOH HOH . G 4 HOH A 24 524 41 HOH HOH . G 4 HOH A 25 525 43 HOH HOH . G 4 HOH A 26 526 44 HOH HOH . G 4 HOH A 27 527 45 HOH HOH . G 4 HOH A 28 528 46 HOH HOH . G 4 HOH A 29 529 47 HOH HOH . G 4 HOH A 30 530 49 HOH HOH . G 4 HOH A 31 531 51 HOH HOH . G 4 HOH A 32 532 52 HOH HOH . G 4 HOH A 33 533 56 HOH HOH . G 4 HOH A 34 534 57 HOH HOH . G 4 HOH A 35 535 58 HOH HOH . G 4 HOH A 36 536 59 HOH HOH . G 4 HOH A 37 537 60 HOH HOH . G 4 HOH A 38 538 61 HOH HOH . G 4 HOH A 39 539 62 HOH HOH . G 4 HOH A 40 540 63 HOH HOH . G 4 HOH A 41 541 65 HOH HOH . G 4 HOH A 42 542 66 HOH HOH . G 4 HOH A 43 543 67 HOH HOH . G 4 HOH A 44 544 68 HOH HOH . G 4 HOH A 45 545 69 HOH HOH . G 4 HOH A 46 546 70 HOH HOH . G 4 HOH A 47 547 71 HOH HOH . G 4 HOH A 48 548 74 HOH HOH . G 4 HOH A 49 549 77 HOH HOH . G 4 HOH A 50 550 79 HOH HOH . G 4 HOH A 51 551 81 HOH HOH . G 4 HOH A 52 552 83 HOH HOH . G 4 HOH A 53 553 86 HOH HOH . G 4 HOH A 54 554 88 HOH HOH . G 4 HOH A 55 555 90 HOH HOH . G 4 HOH A 56 556 91 HOH HOH . G 4 HOH A 57 557 94 HOH HOH . G 4 HOH A 58 558 95 HOH HOH . G 4 HOH A 59 559 97 HOH HOH . G 4 HOH A 60 560 99 HOH HOH . G 4 HOH A 61 561 101 HOH HOH . G 4 HOH A 62 562 105 HOH HOH . G 4 HOH A 63 563 106 HOH HOH . G 4 HOH A 64 564 108 HOH HOH . G 4 HOH A 65 565 111 HOH HOH . G 4 HOH A 66 566 112 HOH HOH . G 4 HOH A 67 567 114 HOH HOH . G 4 HOH A 68 568 115 HOH HOH . G 4 HOH A 69 569 117 HOH HOH . G 4 HOH A 70 570 118 HOH HOH . G 4 HOH A 71 571 119 HOH HOH . G 4 HOH A 72 572 121 HOH HOH . G 4 HOH A 73 573 122 HOH HOH . G 4 HOH A 74 574 124 HOH HOH . G 4 HOH A 75 575 126 HOH HOH . G 4 HOH A 76 576 128 HOH HOH . G 4 HOH A 77 577 129 HOH HOH . G 4 HOH A 78 578 130 HOH HOH . G 4 HOH A 79 579 133 HOH HOH . G 4 HOH A 80 580 138 HOH HOH . G 4 HOH A 81 581 140 HOH HOH . G 4 HOH A 82 582 141 HOH HOH . G 4 HOH A 83 583 142 HOH HOH . G 4 HOH A 84 584 144 HOH HOH . G 4 HOH A 85 585 148 HOH HOH . G 4 HOH A 86 586 150 HOH HOH . G 4 HOH A 87 587 151 HOH HOH . G 4 HOH A 88 588 152 HOH HOH . G 4 HOH A 89 589 155 HOH HOH . G 4 HOH A 90 590 158 HOH HOH . G 4 HOH A 91 591 159 HOH HOH . G 4 HOH A 92 592 160 HOH HOH . G 4 HOH A 93 593 161 HOH HOH . G 4 HOH A 94 594 162 HOH HOH . G 4 HOH A 95 595 166 HOH HOH . G 4 HOH A 96 596 168 HOH HOH . G 4 HOH A 97 597 170 HOH HOH . G 4 HOH A 98 598 171 HOH HOH . G 4 HOH A 99 599 173 HOH HOH . G 4 HOH A 100 600 176 HOH HOH . G 4 HOH A 101 601 177 HOH HOH . G 4 HOH A 102 602 180 HOH HOH . G 4 HOH A 103 603 182 HOH HOH . G 4 HOH A 104 604 185 HOH HOH . G 4 HOH A 105 605 187 HOH HOH . G 4 HOH A 106 606 188 HOH HOH . G 4 HOH A 107 607 189 HOH HOH . G 4 HOH A 108 608 190 HOH HOH . G 4 HOH A 109 609 191 HOH HOH . G 4 HOH A 110 610 193 HOH HOH . G 4 HOH A 111 611 194 HOH HOH . G 4 HOH A 112 612 195 HOH HOH . G 4 HOH A 113 613 200 HOH HOH . G 4 HOH A 114 614 203 HOH HOH . G 4 HOH A 115 615 206 HOH HOH . G 4 HOH A 116 616 207 HOH HOH . G 4 HOH A 117 617 209 HOH HOH . G 4 HOH A 118 618 210 HOH HOH . G 4 HOH A 119 619 211 HOH HOH . G 4 HOH A 120 620 214 HOH HOH . G 4 HOH A 121 621 215 HOH HOH . G 4 HOH A 122 622 216 HOH HOH . G 4 HOH A 123 623 217 HOH HOH . G 4 HOH A 124 624 220 HOH HOH . G 4 HOH A 125 625 233 HOH HOH . G 4 HOH A 126 626 235 HOH HOH . G 4 HOH A 127 627 247 HOH HOH . G 4 HOH A 128 628 248 HOH HOH . G 4 HOH A 129 629 249 HOH HOH . G 4 HOH A 130 630 250 HOH HOH . G 4 HOH A 131 631 251 HOH HOH . G 4 HOH A 132 632 252 HOH HOH . G 4 HOH A 133 633 253 HOH HOH . G 4 HOH A 134 634 254 HOH HOH . G 4 HOH A 135 635 255 HOH HOH . G 4 HOH A 136 636 256 HOH HOH . G 4 HOH A 137 637 257 HOH HOH . G 4 HOH A 138 638 258 HOH HOH . G 4 HOH A 139 639 259 HOH HOH . G 4 HOH A 140 640 260 HOH HOH . G 4 HOH A 141 641 261 HOH HOH . G 4 HOH A 142 642 273 HOH HOH . G 4 HOH A 143 643 274 HOH HOH . G 4 HOH A 144 644 275 HOH HOH . G 4 HOH A 145 645 276 HOH HOH . G 4 HOH A 146 646 277 HOH HOH . G 4 HOH A 147 647 278 HOH HOH . G 4 HOH A 148 648 279 HOH HOH . G 4 HOH A 149 649 280 HOH HOH . G 4 HOH A 150 650 282 HOH HOH . G 4 HOH A 151 651 286 HOH HOH . G 4 HOH A 152 652 287 HOH HOH . G 4 HOH A 153 653 289 HOH HOH . H 4 HOH B 1 501 4 HOH HOH . H 4 HOH B 2 502 15 HOH HOH . H 4 HOH B 3 503 17 HOH HOH . H 4 HOH B 4 504 20 HOH HOH . H 4 HOH B 5 505 22 HOH HOH . H 4 HOH B 6 506 23 HOH HOH . H 4 HOH B 7 507 24 HOH HOH . H 4 HOH B 8 508 28 HOH HOH . H 4 HOH B 9 509 33 HOH HOH . H 4 HOH B 10 510 37 HOH HOH . H 4 HOH B 11 511 42 HOH HOH . H 4 HOH B 12 512 54 HOH HOH . H 4 HOH B 13 513 55 HOH HOH . H 4 HOH B 14 514 73 HOH HOH . H 4 HOH B 15 515 75 HOH HOH . H 4 HOH B 16 516 78 HOH HOH . H 4 HOH B 17 517 82 HOH HOH . H 4 HOH B 18 518 84 HOH HOH . H 4 HOH B 19 519 85 HOH HOH . H 4 HOH B 20 520 89 HOH HOH . H 4 HOH B 21 521 92 HOH HOH . H 4 HOH B 22 522 93 HOH HOH . H 4 HOH B 23 523 98 HOH HOH . H 4 HOH B 24 524 100 HOH HOH . H 4 HOH B 25 525 103 HOH HOH . H 4 HOH B 26 526 113 HOH HOH . H 4 HOH B 27 527 120 HOH HOH . H 4 HOH B 28 528 123 HOH HOH . H 4 HOH B 29 529 125 HOH HOH . H 4 HOH B 30 530 131 HOH HOH . H 4 HOH B 31 531 132 HOH HOH . H 4 HOH B 32 532 135 HOH HOH . H 4 HOH B 33 533 136 HOH HOH . H 4 HOH B 34 534 143 HOH HOH . H 4 HOH B 35 535 146 HOH HOH . H 4 HOH B 36 536 153 HOH HOH . H 4 HOH B 37 537 154 HOH HOH . H 4 HOH B 38 538 157 HOH HOH . H 4 HOH B 39 539 164 HOH HOH . H 4 HOH B 40 540 165 HOH HOH . H 4 HOH B 41 541 169 HOH HOH . H 4 HOH B 42 542 172 HOH HOH . H 4 HOH B 43 543 178 HOH HOH . H 4 HOH B 44 544 181 HOH HOH . H 4 HOH B 45 545 184 HOH HOH . H 4 HOH B 46 546 186 HOH HOH . H 4 HOH B 47 547 192 HOH HOH . H 4 HOH B 48 548 196 HOH HOH . H 4 HOH B 49 549 197 HOH HOH . H 4 HOH B 50 550 198 HOH HOH . H 4 HOH B 51 551 204 HOH HOH . H 4 HOH B 52 552 208 HOH HOH . H 4 HOH B 53 553 212 HOH HOH . H 4 HOH B 54 554 218 HOH HOH . H 4 HOH B 55 555 222 HOH HOH . H 4 HOH B 56 556 226 HOH HOH . H 4 HOH B 57 557 227 HOH HOH . H 4 HOH B 58 558 234 HOH HOH . H 4 HOH B 59 559 237 HOH HOH . H 4 HOH B 60 560 238 HOH HOH . H 4 HOH B 61 561 239 HOH HOH . H 4 HOH B 62 562 240 HOH HOH . H 4 HOH B 63 563 241 HOH HOH . H 4 HOH B 64 564 242 HOH HOH . H 4 HOH B 65 565 243 HOH HOH . H 4 HOH B 66 566 245 HOH HOH . H 4 HOH B 67 567 246 HOH HOH . H 4 HOH B 68 568 263 HOH HOH . H 4 HOH B 69 569 264 HOH HOH . H 4 HOH B 70 570 265 HOH HOH . H 4 HOH B 71 571 266 HOH HOH . H 4 HOH B 72 572 267 HOH HOH . H 4 HOH B 73 573 268 HOH HOH . H 4 HOH B 74 574 269 HOH HOH . H 4 HOH B 75 575 270 HOH HOH . H 4 HOH B 76 576 271 HOH HOH . H 4 HOH B 77 577 272 HOH HOH . H 4 HOH B 78 578 283 HOH HOH . H 4 HOH B 79 579 284 HOH HOH . H 4 HOH B 80 580 285 HOH HOH . H 4 HOH B 81 581 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 42.345 -10.12 -16.741 1 67.64 ? C1 EDO 402 B 1 HETATM 2 O O1 EDO . . . F 2 41.511 -10.506 -17.847 1 74.59 ? O1 EDO 402 B 1 HETATM 3 C C2 EDO . . . F 2 43.714 -9.651 -17.234 1 75.02 ? C2 EDO 402 B 1 HETATM 4 O O2 EDO . . . F 2 44.381 -10.65 -18.028 1 58.9 ? O2 EDO 402 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 551 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #