data_4JXY # _model_server_result.job_id Wly9aKBZoTZC1un2bT1vKw _model_server_result.datetime_utc '2024-12-16 13:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JXY # _exptl.entry_id 4JXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JXY _cell.length_a 149.173 _cell.length_b 149.173 _cell.length_c 149.173 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,3,4,5,6,7 A,B,C,D 3 1,8,9,10,6,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 24_444 -z-1/4,-y-1/4,-x-1/4 0 0 -1 0 -1 0 -1 0 0 -37.29325 -37.29325 -37.29325 3 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -74.5865 0 -74.5865 4 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 74.5865 -74.5865 5 'crystal symmetry operation' 13_454 y-1/4,x+1/4,-z-3/4 0 1 0 1 0 0 0 0 -1 -37.29325 37.29325 -111.87975 6 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -37.29325 -37.29325 -37.29325 7 'crystal symmetry operation' 22_554 z+1/4,-y+1/4,x-1/4 0 0 1 0 -1 0 1 0 0 37.29325 37.29325 -37.29325 8 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0 -1 0 -1 0 0 0 0 -1 -37.29325 -37.29325 -37.29325 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 276 n n P O2 PO4 sing 277 n n P O3 PO4 sing 278 n n P O4 PO4 sing 279 n n # _atom_sites.entry_id 4JXY _atom_sites.fract_transf_matrix[1][1] 0.006704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 3 GUA A 1 402 1 GUA UNL . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 8 HOH HOH . D 4 HOH A 6 506 9 HOH HOH . D 4 HOH A 7 507 10 HOH HOH . D 4 HOH A 8 508 11 HOH HOH . D 4 HOH A 9 509 12 HOH HOH . D 4 HOH A 10 510 13 HOH HOH . D 4 HOH A 11 511 14 HOH HOH . D 4 HOH A 12 512 15 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 20 HOH HOH . D 4 HOH A 18 518 21 HOH HOH . D 4 HOH A 19 519 22 HOH HOH . D 4 HOH A 20 520 24 HOH HOH . D 4 HOH A 21 521 25 HOH HOH . D 4 HOH A 22 522 26 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 28 HOH HOH . D 4 HOH A 25 525 29 HOH HOH . D 4 HOH A 26 526 30 HOH HOH . D 4 HOH A 27 527 31 HOH HOH . D 4 HOH A 28 528 32 HOH HOH . D 4 HOH A 29 529 33 HOH HOH . D 4 HOH A 30 530 34 HOH HOH . D 4 HOH A 31 531 35 HOH HOH . D 4 HOH A 32 532 36 HOH HOH . D 4 HOH A 33 533 37 HOH HOH . D 4 HOH A 34 534 38 HOH HOH . D 4 HOH A 35 535 39 HOH HOH . D 4 HOH A 36 536 40 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 42 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 44 HOH HOH . D 4 HOH A 41 541 45 HOH HOH . D 4 HOH A 42 542 46 HOH HOH . D 4 HOH A 43 543 48 HOH HOH . D 4 HOH A 44 544 49 HOH HOH . D 4 HOH A 45 545 50 HOH HOH . D 4 HOH A 46 546 51 HOH HOH . D 4 HOH A 47 547 52 HOH HOH . D 4 HOH A 48 548 53 HOH HOH . D 4 HOH A 49 549 54 HOH HOH . D 4 HOH A 50 550 55 HOH HOH . D 4 HOH A 51 551 56 HOH HOH . D 4 HOH A 52 552 57 HOH HOH . D 4 HOH A 53 553 59 HOH HOH . D 4 HOH A 54 554 60 HOH HOH . D 4 HOH A 55 555 61 HOH HOH . D 4 HOH A 56 556 62 HOH HOH . D 4 HOH A 57 557 63 HOH HOH . D 4 HOH A 58 558 64 HOH HOH . D 4 HOH A 59 559 65 HOH HOH . D 4 HOH A 60 560 66 HOH HOH . D 4 HOH A 61 561 67 HOH HOH . D 4 HOH A 62 562 70 HOH HOH . D 4 HOH A 63 563 72 HOH HOH . D 4 HOH A 64 564 73 HOH HOH . D 4 HOH A 65 565 74 HOH HOH . D 4 HOH A 66 566 76 HOH HOH . D 4 HOH A 67 567 77 HOH HOH . D 4 HOH A 68 568 78 HOH HOH . D 4 HOH A 69 569 80 HOH HOH . D 4 HOH A 70 570 81 HOH HOH . D 4 HOH A 71 571 82 HOH HOH . D 4 HOH A 72 572 83 HOH HOH . D 4 HOH A 73 573 84 HOH HOH . D 4 HOH A 74 574 85 HOH HOH . D 4 HOH A 75 575 86 HOH HOH . D 4 HOH A 76 576 88 HOH HOH . D 4 HOH A 77 577 89 HOH HOH . D 4 HOH A 78 578 90 HOH HOH . D 4 HOH A 79 579 91 HOH HOH . D 4 HOH A 80 580 92 HOH HOH . D 4 HOH A 81 581 93 HOH HOH . D 4 HOH A 82 582 94 HOH HOH . D 4 HOH A 83 583 95 HOH HOH . D 4 HOH A 84 584 96 HOH HOH . D 4 HOH A 85 585 97 HOH HOH . D 4 HOH A 86 586 99 HOH HOH . D 4 HOH A 87 587 100 HOH HOH . D 4 HOH A 88 588 101 HOH HOH . D 4 HOH A 89 589 102 HOH HOH . D 4 HOH A 90 590 103 HOH HOH . D 4 HOH A 91 591 104 HOH HOH . D 4 HOH A 92 592 105 HOH HOH . D 4 HOH A 93 593 106 HOH HOH . D 4 HOH A 94 594 107 HOH HOH . D 4 HOH A 95 595 108 HOH HOH . D 4 HOH A 96 596 109 HOH HOH . D 4 HOH A 97 597 110 HOH HOH . D 4 HOH A 98 598 111 HOH HOH . D 4 HOH A 99 599 112 HOH HOH . D 4 HOH A 100 600 113 HOH HOH . D 4 HOH A 101 601 115 HOH HOH . D 4 HOH A 102 602 116 HOH HOH . D 4 HOH A 103 603 118 HOH HOH . D 4 HOH A 104 604 119 HOH HOH . D 4 HOH A 105 605 120 HOH HOH . D 4 HOH A 106 606 121 HOH HOH . D 4 HOH A 107 607 122 HOH HOH . D 4 HOH A 108 608 123 HOH HOH . D 4 HOH A 109 609 124 HOH HOH . D 4 HOH A 110 610 125 HOH HOH . D 4 HOH A 111 611 126 HOH HOH . D 4 HOH A 112 612 127 HOH HOH . D 4 HOH A 113 613 128 HOH HOH . D 4 HOH A 114 614 129 HOH HOH . D 4 HOH A 115 615 130 HOH HOH . D 4 HOH A 116 616 131 HOH HOH . D 4 HOH A 117 617 132 HOH HOH . D 4 HOH A 118 618 133 HOH HOH . D 4 HOH A 119 619 134 HOH HOH . D 4 HOH A 120 620 137 HOH HOH . D 4 HOH A 121 621 138 HOH HOH . D 4 HOH A 122 622 139 HOH HOH . D 4 HOH A 123 623 140 HOH HOH . D 4 HOH A 124 624 143 HOH HOH . D 4 HOH A 125 625 144 HOH HOH . D 4 HOH A 126 626 146 HOH HOH . D 4 HOH A 127 627 147 HOH HOH . D 4 HOH A 128 628 148 HOH HOH . D 4 HOH A 129 629 149 HOH HOH . D 4 HOH A 130 630 152 HOH HOH . D 4 HOH A 131 631 153 HOH HOH . D 4 HOH A 132 632 154 HOH HOH . D 4 HOH A 133 633 156 HOH HOH . D 4 HOH A 134 634 157 HOH HOH . D 4 HOH A 135 635 158 HOH HOH . D 4 HOH A 136 636 159 HOH HOH . D 4 HOH A 137 637 160 HOH HOH . D 4 HOH A 138 638 161 HOH HOH . D 4 HOH A 139 639 162 HOH HOH . D 4 HOH A 140 640 163 HOH HOH . D 4 HOH A 141 641 164 HOH HOH . D 4 HOH A 142 642 165 HOH HOH . D 4 HOH A 143 643 166 HOH HOH . D 4 HOH A 144 644 167 HOH HOH . D 4 HOH A 145 645 168 HOH HOH . D 4 HOH A 146 646 169 HOH HOH . D 4 HOH A 147 647 171 HOH HOH . D 4 HOH A 148 648 174 HOH HOH . D 4 HOH A 149 649 175 HOH HOH . D 4 HOH A 150 650 176 HOH HOH . D 4 HOH A 151 651 177 HOH HOH . D 4 HOH A 152 652 178 HOH HOH . D 4 HOH A 153 653 179 HOH HOH . D 4 HOH A 154 654 180 HOH HOH . D 4 HOH A 155 655 181 HOH HOH . D 4 HOH A 156 656 182 HOH HOH . D 4 HOH A 157 657 185 HOH HOH . D 4 HOH A 158 658 186 HOH HOH . D 4 HOH A 159 659 187 HOH HOH . D 4 HOH A 160 660 188 HOH HOH . D 4 HOH A 161 661 189 HOH HOH . D 4 HOH A 162 662 190 HOH HOH . D 4 HOH A 163 663 191 HOH HOH . D 4 HOH A 164 664 193 HOH HOH . D 4 HOH A 165 665 194 HOH HOH . D 4 HOH A 166 666 195 HOH HOH . D 4 HOH A 167 667 196 HOH HOH . D 4 HOH A 168 668 197 HOH HOH . D 4 HOH A 169 669 198 HOH HOH . D 4 HOH A 170 670 199 HOH HOH . D 4 HOH A 171 671 200 HOH HOH . D 4 HOH A 172 672 202 HOH HOH . D 4 HOH A 173 673 203 HOH HOH . D 4 HOH A 174 674 204 HOH HOH . D 4 HOH A 175 675 205 HOH HOH . D 4 HOH A 176 676 206 HOH HOH . D 4 HOH A 177 677 207 HOH HOH . D 4 HOH A 178 678 208 HOH HOH . D 4 HOH A 179 679 209 HOH HOH . D 4 HOH A 180 680 210 HOH HOH . D 4 HOH A 181 681 211 HOH HOH . D 4 HOH A 182 682 212 HOH HOH . D 4 HOH A 183 683 213 HOH HOH . D 4 HOH A 184 684 214 HOH HOH . D 4 HOH A 185 685 215 HOH HOH . D 4 HOH A 186 686 216 HOH HOH . D 4 HOH A 187 687 217 HOH HOH . D 4 HOH A 188 688 218 HOH HOH . D 4 HOH A 189 689 219 HOH HOH . D 4 HOH A 190 690 220 HOH HOH . D 4 HOH A 191 691 225 HOH HOH . D 4 HOH A 192 692 226 HOH HOH . D 4 HOH A 193 693 227 HOH HOH . D 4 HOH A 194 694 228 HOH HOH . D 4 HOH A 195 695 229 HOH HOH . D 4 HOH A 196 696 230 HOH HOH . D 4 HOH A 197 697 231 HOH HOH . D 4 HOH A 198 698 232 HOH HOH . D 4 HOH A 199 699 233 HOH HOH . D 4 HOH A 200 700 234 HOH HOH . D 4 HOH A 201 701 235 HOH HOH . D 4 HOH A 202 702 236 HOH HOH . D 4 HOH A 203 703 237 HOH HOH . D 4 HOH A 204 704 238 HOH HOH . D 4 HOH A 205 705 239 HOH HOH . D 4 HOH A 206 706 240 HOH HOH . D 4 HOH A 207 707 241 HOH HOH . D 4 HOH A 208 708 242 HOH HOH . D 4 HOH A 209 709 243 HOH HOH . D 4 HOH A 210 710 244 HOH HOH . D 4 HOH A 211 711 245 HOH HOH . D 4 HOH A 212 712 246 HOH HOH . D 4 HOH A 213 713 247 HOH HOH . D 4 HOH A 214 714 248 HOH HOH . D 4 HOH A 215 715 249 HOH HOH . D 4 HOH A 216 716 250 HOH HOH . D 4 HOH A 217 717 251 HOH HOH . D 4 HOH A 218 718 252 HOH HOH . D 4 HOH A 219 719 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 14.159 0.486 -39.954 1 58.02 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . B 2 14.118 1.566 -41.016 1 77.6 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . B 2 15.551 -0.119 -39.945 1 76.67 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . B 2 13.16 -0.619 -40.217 1 44.25 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . B 2 13.833 1.068 -38.596 1 56.28 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #