data_4JYG # _model_server_result.job_id zfhckry48IGT7Q1U-QXDTg _model_server_result.datetime_utc '2024-10-24 20:16:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4JYG # _exptl.entry_id 4JYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.466 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[(5,5-dimethyl-8-phenyl-5,6-dihydronaphthalen-2-yl)carbonyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JYG _cell.length_a 58.24 _cell.length_b 84.83 _cell.length_c 108.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C26 H23 N O3' _chem_comp.formula_weight 397.466 _chem_comp.id 1NY _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[(5,5-dimethyl-8-phenyl-5,6-dihydronaphthalen-2-yl)carbonyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CBD 1NY sing 1 n n CAS CBD 1NY sing 2 n n CAS CAR 1NY sing 3 n n CAA CBD 1NY sing 4 n n CBD CBC 1NY sing 5 n n CAR CAY 1NY doub 6 n n CBC CAG 1NY doub 7 n y CBC CAX 1NY sing 8 n y CAY CAX 1NY sing 9 n n CAY CBB 1NY sing 10 n n CAL CBB 1NY doub 11 n y CAL CAJ 1NY sing 12 n y CAG CAF 1NY sing 13 n y CAX CAH 1NY doub 14 n y CBB CAM 1NY sing 15 n y CAJ CAI 1NY doub 16 n y CAM CAK 1NY doub 17 n y CAF CAV 1NY doub 18 n y CAH CAV 1NY sing 19 n y CAI CAK 1NY sing 20 n y CAV CAW 1NY sing 21 n n CAW NAT 1NY sing 22 n n CAW OAD 1NY doub 23 n n NAT CAZ 1NY sing 24 n n CAZ CAO 1NY doub 25 n y CAZ CAN 1NY sing 26 n y CAO CAQ 1NY sing 27 n y CAN CAP 1NY doub 28 n y CAQ CBA 1NY doub 29 n y CAP CBA 1NY sing 30 n y CBA CAU 1NY sing 31 n n CAU OAE 1NY doub 32 n n CAU OAC 1NY sing 33 n n CAN H1 1NY sing 34 n n CAP H2 1NY sing 35 n n OAC H3 1NY sing 36 n n CAQ H4 1NY sing 37 n n CAO H5 1NY sing 38 n n NAT H6 1NY sing 39 n n CAH H7 1NY sing 40 n n CAF H8 1NY sing 41 n n CAG H9 1NY sing 42 n n CAA H10 1NY sing 43 n n CAA H11 1NY sing 44 n n CAA H12 1NY sing 45 n n CAB H13 1NY sing 46 n n CAB H14 1NY sing 47 n n CAB H15 1NY sing 48 n n CAS H16 1NY sing 49 n n CAS H17 1NY sing 50 n n CAR H18 1NY sing 51 n n CAL H21 1NY sing 52 n n CAJ H22 1NY sing 53 n n CAI H23 1NY sing 54 n n CAK H24 1NY sing 55 n n CAM H25 1NY sing 56 n n # _atom_sites.entry_id 4JYG _atom_sites.fract_transf_matrix[1][1] 0.01717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1NY A 1 501 1 1NY 1NY . F 4 PE4 B 1 501 1 PE4 PE4 . G 3 1NY B 1 502 1 1NY 1NY . H 5 FLC G 1 701 1 FLC FLC . I 6 HOH A 1 601 1 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 3 HOH HOH . I 6 HOH A 4 604 4 HOH HOH . I 6 HOH A 5 605 7 HOH HOH . I 6 HOH A 6 606 8 HOH HOH . I 6 HOH A 7 607 9 HOH HOH . I 6 HOH A 8 608 10 HOH HOH . I 6 HOH A 9 609 11 HOH HOH . I 6 HOH A 10 610 12 HOH HOH . I 6 HOH A 11 611 13 HOH HOH . I 6 HOH A 12 612 14 HOH HOH . I 6 HOH A 13 613 16 HOH HOH . I 6 HOH A 14 614 17 HOH HOH . I 6 HOH A 15 615 18 HOH HOH . I 6 HOH A 16 616 19 HOH HOH . I 6 HOH A 17 617 20 HOH HOH . I 6 HOH A 18 618 21 HOH HOH . I 6 HOH A 19 619 22 HOH HOH . I 6 HOH A 20 620 23 HOH HOH . I 6 HOH A 21 621 24 HOH HOH . I 6 HOH A 22 622 25 HOH HOH . I 6 HOH A 23 623 26 HOH HOH . I 6 HOH A 24 624 27 HOH HOH . I 6 HOH A 25 625 28 HOH HOH . I 6 HOH A 26 626 29 HOH HOH . I 6 HOH A 27 627 30 HOH HOH . I 6 HOH A 28 628 32 HOH HOH . I 6 HOH A 29 629 33 HOH HOH . I 6 HOH A 30 630 34 HOH HOH . I 6 HOH A 31 631 35 HOH HOH . I 6 HOH A 32 632 36 HOH HOH . I 6 HOH A 33 633 39 HOH HOH . I 6 HOH A 34 634 40 HOH HOH . I 6 HOH A 35 635 42 HOH HOH . I 6 HOH A 36 636 43 HOH HOH . I 6 HOH A 37 637 52 HOH HOH . I 6 HOH A 38 638 55 HOH HOH . I 6 HOH A 39 639 59 HOH HOH . I 6 HOH A 40 640 60 HOH HOH . I 6 HOH A 41 641 62 HOH HOH . I 6 HOH A 42 642 63 HOH HOH . I 6 HOH A 43 643 64 HOH HOH . I 6 HOH A 44 644 65 HOH HOH . I 6 HOH A 45 645 66 HOH HOH . I 6 HOH A 46 646 67 HOH HOH . I 6 HOH A 47 647 68 HOH HOH . I 6 HOH A 48 648 70 HOH HOH . I 6 HOH A 49 649 72 HOH HOH . I 6 HOH A 50 650 83 HOH HOH . I 6 HOH A 51 651 85 HOH HOH . I 6 HOH A 52 652 86 HOH HOH . I 6 HOH A 53 653 87 HOH HOH . I 6 HOH A 54 654 88 HOH HOH . I 6 HOH A 55 655 89 HOH HOH . I 6 HOH A 56 656 90 HOH HOH . I 6 HOH A 57 657 91 HOH HOH . I 6 HOH A 58 658 92 HOH HOH . I 6 HOH A 59 659 96 HOH HOH . I 6 HOH A 60 660 97 HOH HOH . I 6 HOH A 61 661 98 HOH HOH . I 6 HOH A 62 662 99 HOH HOH . I 6 HOH A 63 663 100 HOH HOH . I 6 HOH A 64 664 101 HOH HOH . I 6 HOH A 65 665 102 HOH HOH . I 6 HOH A 66 666 103 HOH HOH . I 6 HOH A 67 667 105 HOH HOH . I 6 HOH A 68 668 106 HOH HOH . I 6 HOH A 69 669 107 HOH HOH . I 6 HOH A 70 670 108 HOH HOH . I 6 HOH A 71 671 111 HOH HOH . I 6 HOH A 72 672 112 HOH HOH . I 6 HOH A 73 673 119 HOH HOH . I 6 HOH A 74 674 120 HOH HOH . I 6 HOH A 75 675 121 HOH HOH . I 6 HOH A 76 676 125 HOH HOH . I 6 HOH A 77 677 127 HOH HOH . I 6 HOH A 78 678 128 HOH HOH . I 6 HOH A 79 679 129 HOH HOH . I 6 HOH A 80 680 130 HOH HOH . I 6 HOH A 81 681 131 HOH HOH . I 6 HOH A 82 682 132 HOH HOH . I 6 HOH A 83 683 133 HOH HOH . I 6 HOH A 84 684 134 HOH HOH . I 6 HOH A 85 685 135 HOH HOH . I 6 HOH A 86 686 137 HOH HOH . I 6 HOH A 87 687 138 HOH HOH . I 6 HOH A 88 688 140 HOH HOH . I 6 HOH A 89 689 142 HOH HOH . I 6 HOH A 90 690 143 HOH HOH . I 6 HOH A 91 691 144 HOH HOH . I 6 HOH A 92 692 145 HOH HOH . I 6 HOH A 93 693 146 HOH HOH . I 6 HOH A 94 694 147 HOH HOH . I 6 HOH A 95 695 148 HOH HOH . I 6 HOH A 96 696 149 HOH HOH . I 6 HOH A 97 697 150 HOH HOH . I 6 HOH A 98 698 173 HOH HOH . I 6 HOH A 99 699 175 HOH HOH . I 6 HOH A 100 700 179 HOH HOH . I 6 HOH A 101 701 180 HOH HOH . I 6 HOH A 102 702 181 HOH HOH . I 6 HOH A 103 703 182 HOH HOH . I 6 HOH A 104 704 183 HOH HOH . I 6 HOH A 105 705 187 HOH HOH . I 6 HOH A 106 706 188 HOH HOH . I 6 HOH A 107 707 189 HOH HOH . I 6 HOH A 108 708 190 HOH HOH . I 6 HOH A 109 709 191 HOH HOH . I 6 HOH A 110 710 192 HOH HOH . I 6 HOH A 111 711 193 HOH HOH . I 6 HOH A 112 712 194 HOH HOH . I 6 HOH A 113 713 196 HOH HOH . I 6 HOH A 114 714 198 HOH HOH . I 6 HOH A 115 715 201 HOH HOH . I 6 HOH A 116 716 204 HOH HOH . I 6 HOH A 117 717 211 HOH HOH . I 6 HOH A 118 718 218 HOH HOH . I 6 HOH A 119 719 219 HOH HOH . I 6 HOH A 120 720 220 HOH HOH . I 6 HOH A 121 721 223 HOH HOH . I 6 HOH A 122 722 229 HOH HOH . I 6 HOH A 123 723 231 HOH HOH . I 6 HOH A 124 724 234 HOH HOH . I 6 HOH A 125 725 235 HOH HOH . I 6 HOH A 126 726 237 HOH HOH . I 6 HOH A 127 727 240 HOH HOH . I 6 HOH A 128 728 252 HOH HOH . I 6 HOH A 129 729 256 HOH HOH . I 6 HOH A 130 730 260 HOH HOH . I 6 HOH A 131 731 261 HOH HOH . I 6 HOH A 132 732 162 HOH HOH . I 6 HOH A 133 733 178 HOH HOH . I 6 HOH A 134 734 242 HOH HOH . I 6 HOH A 135 735 243 HOH HOH . I 6 HOH A 136 736 208 HOH HOH . J 6 HOH B 1 601 136 HOH HOH . J 6 HOH B 2 602 37 HOH HOH . J 6 HOH B 3 603 38 HOH HOH . J 6 HOH B 4 604 45 HOH HOH . J 6 HOH B 5 605 49 HOH HOH . J 6 HOH B 6 606 50 HOH HOH . J 6 HOH B 7 607 51 HOH HOH . J 6 HOH B 8 608 53 HOH HOH . J 6 HOH B 9 609 54 HOH HOH . J 6 HOH B 10 610 56 HOH HOH . J 6 HOH B 11 611 57 HOH HOH . J 6 HOH B 12 612 69 HOH HOH . J 6 HOH B 13 613 73 HOH HOH . J 6 HOH B 14 614 74 HOH HOH . J 6 HOH B 15 615 80 HOH HOH . J 6 HOH B 16 616 82 HOH HOH . J 6 HOH B 17 617 114 HOH HOH . J 6 HOH B 18 618 115 HOH HOH . J 6 HOH B 19 619 116 HOH HOH . J 6 HOH B 20 620 118 HOH HOH . J 6 HOH B 21 621 122 HOH HOH . J 6 HOH B 22 622 123 HOH HOH . J 6 HOH B 23 623 126 HOH HOH . J 6 HOH B 24 624 151 HOH HOH . J 6 HOH B 25 625 154 HOH HOH . J 6 HOH B 26 626 160 HOH HOH . J 6 HOH B 27 627 161 HOH HOH . J 6 HOH B 28 628 163 HOH HOH . J 6 HOH B 29 629 164 HOH HOH . J 6 HOH B 30 630 167 HOH HOH . J 6 HOH B 31 631 169 HOH HOH . J 6 HOH B 32 632 171 HOH HOH . J 6 HOH B 33 633 172 HOH HOH . J 6 HOH B 34 634 176 HOH HOH . J 6 HOH B 35 635 184 HOH HOH . J 6 HOH B 36 636 185 HOH HOH . J 6 HOH B 37 637 186 HOH HOH . J 6 HOH B 38 638 195 HOH HOH . J 6 HOH B 39 639 197 HOH HOH . J 6 HOH B 40 640 199 HOH HOH . J 6 HOH B 41 641 202 HOH HOH . J 6 HOH B 42 642 203 HOH HOH . J 6 HOH B 43 643 205 HOH HOH . J 6 HOH B 44 644 206 HOH HOH . J 6 HOH B 45 645 207 HOH HOH . J 6 HOH B 46 646 225 HOH HOH . J 6 HOH B 47 647 226 HOH HOH . J 6 HOH B 48 648 228 HOH HOH . J 6 HOH B 49 649 230 HOH HOH . J 6 HOH B 50 650 241 HOH HOH . J 6 HOH B 51 651 253 HOH HOH . J 6 HOH B 52 652 255 HOH HOH . J 6 HOH B 53 653 257 HOH HOH . J 6 HOH B 54 654 258 HOH HOH . K 6 HOH F 1 701 200 HOH HOH . K 6 HOH F 2 702 217 HOH HOH . K 6 HOH F 3 703 221 HOH HOH . L 6 HOH G 1 801 71 HOH HOH . L 6 HOH G 2 802 224 HOH HOH . L 6 HOH G 3 803 41 HOH HOH . L 6 HOH G 4 804 155 HOH HOH . L 6 HOH G 5 805 170 HOH HOH . L 6 HOH G 6 806 174 HOH HOH . L 6 HOH G 7 807 213 HOH HOH . L 6 HOH G 8 808 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN 1NY . . . E 3 -9.523 9.037 -4.386 1 28.39 ? CAN 1NY 501 A 1 HETATM 2 C CAP 1NY . . . E 3 -10.011 8.526 -3.175 1 30 ? CAP 1NY 501 A 1 HETATM 3 C CBA 1NY . . . E 3 -9.722 7.199 -2.721 1 30.51 ? CBA 1NY 501 A 1 HETATM 4 C CAU 1NY . . . E 3 -10.284 6.703 -1.507 1 32.05 ? CAU 1NY 501 A 1 HETATM 5 O OAE 1NY . . . E 3 -9.974 5.592 -1.002 1 30.88 ? OAE 1NY 501 A 1 HETATM 6 O OAC 1NY . . . E 3 -11.264 7.318 -0.992 1 31.84 ? OAC 1NY 501 A 1 HETATM 7 C CAQ 1NY . . . E 3 -8.927 6.418 -3.546 1 27.8 ? CAQ 1NY 501 A 1 HETATM 8 C CAO 1NY . . . E 3 -8.417 6.941 -4.753 1 26.04 ? CAO 1NY 501 A 1 HETATM 9 C CAZ 1NY . . . E 3 -8.686 8.24 -5.186 1 26.78 ? CAZ 1NY 501 A 1 HETATM 10 N NAT 1NY . . . E 3 -8.271 8.602 -6.42 1 23.42 ? NAT 1NY 501 A 1 HETATM 11 C CAW 1NY . . . E 3 -8.405 9.847 -6.937 1 22.25 ? CAW 1NY 501 A 1 HETATM 12 O OAD 1NY . . . E 3 -8.712 10.864 -6.297 1 23.26 ? OAD 1NY 501 A 1 HETATM 13 C CAV 1NY . . . E 3 -8.098 9.956 -8.297 1 22.56 ? CAV 1NY 501 A 1 HETATM 14 C CAH 1NY . . . E 3 -8.118 11.235 -8.893 1 23.2 ? CAH 1NY 501 A 1 HETATM 15 C CAX 1NY . . . E 3 -7.878 11.431 -10.257 1 22.9 ? CAX 1NY 501 A 1 HETATM 16 C CAF 1NY . . . E 3 -7.775 8.827 -9.059 1 19.84 ? CAF 1NY 501 A 1 HETATM 17 C CAG 1NY . . . E 3 -7.584 8.985 -10.443 1 21.16 ? CAG 1NY 501 A 1 HETATM 18 C CBC 1NY . . . E 3 -7.457 10.26 -11.018 1 22.46 ? CBC 1NY 501 A 1 HETATM 19 C CBD 1NY . . . E 3 -7.286 10.469 -12.56 1 24.85 ? CBD 1NY 501 A 1 HETATM 20 C CAA 1NY . . . E 3 -5.803 10.831 -12.754 1 24.61 ? CAA 1NY 501 A 1 HETATM 21 C CAB 1NY . . . E 3 -7.433 9.237 -13.407 1 26.38 ? CAB 1NY 501 A 1 HETATM 22 C CAS 1NY . . . E 3 -8.117 11.665 -13.081 1 23.76 ? CAS 1NY 501 A 1 HETATM 23 C CAR 1NY . . . E 3 -7.666 12.895 -12.222 1 26.43 ? CAR 1NY 501 A 1 HETATM 24 C CAY 1NY . . . E 3 -7.927 12.717 -10.848 1 24.44 ? CAY 1NY 501 A 1 HETATM 25 C CBB 1NY . . . E 3 -8.039 13.927 -10.156 1 25.56 ? CBB 1NY 501 A 1 HETATM 26 C CAL 1NY . . . E 3 -8.929 14.928 -10.527 1 24.32 ? CAL 1NY 501 A 1 HETATM 27 C CAJ 1NY . . . E 3 -8.924 16.131 -9.824 1 25.62 ? CAJ 1NY 501 A 1 HETATM 28 C CAI 1NY . . . E 3 -7.992 16.403 -8.819 1 25.85 ? CAI 1NY 501 A 1 HETATM 29 C CAK 1NY . . . E 3 -7.055 15.423 -8.487 1 25.3 ? CAK 1NY 501 A 1 HETATM 30 C CAM 1NY . . . E 3 -7.076 14.209 -9.154 1 24.54 ? CAM 1NY 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 30 #