data_4JYG # _model_server_result.job_id LmSpL1qhzKCgzLP4mPpKgw _model_server_result.datetime_utc '2024-12-01 21:01:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":701}' # _entry.id 4JYG # _exptl.entry_id 4JYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JYG _cell.length_a 58.24 _cell.length_b 84.83 _cell.length_c 108.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 139 n n CAC OA1 FLC doub 140 n n CAC OA2 FLC sing 141 n n CA CB FLC sing 142 n n CA HA1 FLC sing 143 n n CA HA2 FLC sing 144 n n CB CBC FLC sing 145 n n CB CG FLC sing 146 n n CB OHB FLC sing 147 n n CBC OB1 FLC doub 148 n n CBC OB2 FLC sing 149 n n CG CGC FLC sing 150 n n CG HG1 FLC sing 151 n n CG HG2 FLC sing 152 n n CGC OG1 FLC doub 153 n n CGC OG2 FLC sing 154 n n OHB HOB FLC sing 155 n n # _atom_sites.entry_id 4JYG _atom_sites.fract_transf_matrix[1][1] 0.01717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1NY A 1 501 1 1NY 1NY . F 4 PE4 B 1 501 1 PE4 PE4 . G 3 1NY B 1 502 1 1NY 1NY . H 5 FLC G 1 701 1 FLC FLC . I 6 HOH A 1 601 1 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 3 HOH HOH . I 6 HOH A 4 604 4 HOH HOH . I 6 HOH A 5 605 7 HOH HOH . I 6 HOH A 6 606 8 HOH HOH . I 6 HOH A 7 607 9 HOH HOH . I 6 HOH A 8 608 10 HOH HOH . I 6 HOH A 9 609 11 HOH HOH . I 6 HOH A 10 610 12 HOH HOH . I 6 HOH A 11 611 13 HOH HOH . I 6 HOH A 12 612 14 HOH HOH . I 6 HOH A 13 613 16 HOH HOH . I 6 HOH A 14 614 17 HOH HOH . I 6 HOH A 15 615 18 HOH HOH . I 6 HOH A 16 616 19 HOH HOH . I 6 HOH A 17 617 20 HOH HOH . I 6 HOH A 18 618 21 HOH HOH . I 6 HOH A 19 619 22 HOH HOH . I 6 HOH A 20 620 23 HOH HOH . I 6 HOH A 21 621 24 HOH HOH . I 6 HOH A 22 622 25 HOH HOH . I 6 HOH A 23 623 26 HOH HOH . I 6 HOH A 24 624 27 HOH HOH . I 6 HOH A 25 625 28 HOH HOH . I 6 HOH A 26 626 29 HOH HOH . I 6 HOH A 27 627 30 HOH HOH . I 6 HOH A 28 628 32 HOH HOH . I 6 HOH A 29 629 33 HOH HOH . I 6 HOH A 30 630 34 HOH HOH . I 6 HOH A 31 631 35 HOH HOH . I 6 HOH A 32 632 36 HOH HOH . I 6 HOH A 33 633 39 HOH HOH . I 6 HOH A 34 634 40 HOH HOH . I 6 HOH A 35 635 42 HOH HOH . I 6 HOH A 36 636 43 HOH HOH . I 6 HOH A 37 637 52 HOH HOH . I 6 HOH A 38 638 55 HOH HOH . I 6 HOH A 39 639 59 HOH HOH . I 6 HOH A 40 640 60 HOH HOH . I 6 HOH A 41 641 62 HOH HOH . I 6 HOH A 42 642 63 HOH HOH . I 6 HOH A 43 643 64 HOH HOH . I 6 HOH A 44 644 65 HOH HOH . I 6 HOH A 45 645 66 HOH HOH . I 6 HOH A 46 646 67 HOH HOH . I 6 HOH A 47 647 68 HOH HOH . I 6 HOH A 48 648 70 HOH HOH . I 6 HOH A 49 649 72 HOH HOH . I 6 HOH A 50 650 83 HOH HOH . I 6 HOH A 51 651 85 HOH HOH . I 6 HOH A 52 652 86 HOH HOH . I 6 HOH A 53 653 87 HOH HOH . I 6 HOH A 54 654 88 HOH HOH . I 6 HOH A 55 655 89 HOH HOH . I 6 HOH A 56 656 90 HOH HOH . I 6 HOH A 57 657 91 HOH HOH . I 6 HOH A 58 658 92 HOH HOH . I 6 HOH A 59 659 96 HOH HOH . I 6 HOH A 60 660 97 HOH HOH . I 6 HOH A 61 661 98 HOH HOH . I 6 HOH A 62 662 99 HOH HOH . I 6 HOH A 63 663 100 HOH HOH . I 6 HOH A 64 664 101 HOH HOH . I 6 HOH A 65 665 102 HOH HOH . I 6 HOH A 66 666 103 HOH HOH . I 6 HOH A 67 667 105 HOH HOH . I 6 HOH A 68 668 106 HOH HOH . I 6 HOH A 69 669 107 HOH HOH . I 6 HOH A 70 670 108 HOH HOH . I 6 HOH A 71 671 111 HOH HOH . I 6 HOH A 72 672 112 HOH HOH . I 6 HOH A 73 673 119 HOH HOH . I 6 HOH A 74 674 120 HOH HOH . I 6 HOH A 75 675 121 HOH HOH . I 6 HOH A 76 676 125 HOH HOH . I 6 HOH A 77 677 127 HOH HOH . I 6 HOH A 78 678 128 HOH HOH . I 6 HOH A 79 679 129 HOH HOH . I 6 HOH A 80 680 130 HOH HOH . I 6 HOH A 81 681 131 HOH HOH . I 6 HOH A 82 682 132 HOH HOH . I 6 HOH A 83 683 133 HOH HOH . I 6 HOH A 84 684 134 HOH HOH . I 6 HOH A 85 685 135 HOH HOH . I 6 HOH A 86 686 137 HOH HOH . I 6 HOH A 87 687 138 HOH HOH . I 6 HOH A 88 688 140 HOH HOH . I 6 HOH A 89 689 142 HOH HOH . I 6 HOH A 90 690 143 HOH HOH . I 6 HOH A 91 691 144 HOH HOH . I 6 HOH A 92 692 145 HOH HOH . I 6 HOH A 93 693 146 HOH HOH . I 6 HOH A 94 694 147 HOH HOH . I 6 HOH A 95 695 148 HOH HOH . I 6 HOH A 96 696 149 HOH HOH . I 6 HOH A 97 697 150 HOH HOH . I 6 HOH A 98 698 173 HOH HOH . I 6 HOH A 99 699 175 HOH HOH . I 6 HOH A 100 700 179 HOH HOH . I 6 HOH A 101 701 180 HOH HOH . I 6 HOH A 102 702 181 HOH HOH . I 6 HOH A 103 703 182 HOH HOH . I 6 HOH A 104 704 183 HOH HOH . I 6 HOH A 105 705 187 HOH HOH . I 6 HOH A 106 706 188 HOH HOH . I 6 HOH A 107 707 189 HOH HOH . I 6 HOH A 108 708 190 HOH HOH . I 6 HOH A 109 709 191 HOH HOH . I 6 HOH A 110 710 192 HOH HOH . I 6 HOH A 111 711 193 HOH HOH . I 6 HOH A 112 712 194 HOH HOH . I 6 HOH A 113 713 196 HOH HOH . I 6 HOH A 114 714 198 HOH HOH . I 6 HOH A 115 715 201 HOH HOH . I 6 HOH A 116 716 204 HOH HOH . I 6 HOH A 117 717 211 HOH HOH . I 6 HOH A 118 718 218 HOH HOH . I 6 HOH A 119 719 219 HOH HOH . I 6 HOH A 120 720 220 HOH HOH . I 6 HOH A 121 721 223 HOH HOH . I 6 HOH A 122 722 229 HOH HOH . I 6 HOH A 123 723 231 HOH HOH . I 6 HOH A 124 724 234 HOH HOH . I 6 HOH A 125 725 235 HOH HOH . I 6 HOH A 126 726 237 HOH HOH . I 6 HOH A 127 727 240 HOH HOH . I 6 HOH A 128 728 252 HOH HOH . I 6 HOH A 129 729 256 HOH HOH . I 6 HOH A 130 730 260 HOH HOH . I 6 HOH A 131 731 261 HOH HOH . I 6 HOH A 132 732 162 HOH HOH . I 6 HOH A 133 733 178 HOH HOH . I 6 HOH A 134 734 242 HOH HOH . I 6 HOH A 135 735 243 HOH HOH . I 6 HOH A 136 736 208 HOH HOH . J 6 HOH B 1 601 136 HOH HOH . J 6 HOH B 2 602 37 HOH HOH . J 6 HOH B 3 603 38 HOH HOH . J 6 HOH B 4 604 45 HOH HOH . J 6 HOH B 5 605 49 HOH HOH . J 6 HOH B 6 606 50 HOH HOH . J 6 HOH B 7 607 51 HOH HOH . J 6 HOH B 8 608 53 HOH HOH . J 6 HOH B 9 609 54 HOH HOH . J 6 HOH B 10 610 56 HOH HOH . J 6 HOH B 11 611 57 HOH HOH . J 6 HOH B 12 612 69 HOH HOH . J 6 HOH B 13 613 73 HOH HOH . J 6 HOH B 14 614 74 HOH HOH . J 6 HOH B 15 615 80 HOH HOH . J 6 HOH B 16 616 82 HOH HOH . J 6 HOH B 17 617 114 HOH HOH . J 6 HOH B 18 618 115 HOH HOH . J 6 HOH B 19 619 116 HOH HOH . J 6 HOH B 20 620 118 HOH HOH . J 6 HOH B 21 621 122 HOH HOH . J 6 HOH B 22 622 123 HOH HOH . J 6 HOH B 23 623 126 HOH HOH . J 6 HOH B 24 624 151 HOH HOH . J 6 HOH B 25 625 154 HOH HOH . J 6 HOH B 26 626 160 HOH HOH . J 6 HOH B 27 627 161 HOH HOH . J 6 HOH B 28 628 163 HOH HOH . J 6 HOH B 29 629 164 HOH HOH . J 6 HOH B 30 630 167 HOH HOH . J 6 HOH B 31 631 169 HOH HOH . J 6 HOH B 32 632 171 HOH HOH . J 6 HOH B 33 633 172 HOH HOH . J 6 HOH B 34 634 176 HOH HOH . J 6 HOH B 35 635 184 HOH HOH . J 6 HOH B 36 636 185 HOH HOH . J 6 HOH B 37 637 186 HOH HOH . J 6 HOH B 38 638 195 HOH HOH . J 6 HOH B 39 639 197 HOH HOH . J 6 HOH B 40 640 199 HOH HOH . J 6 HOH B 41 641 202 HOH HOH . J 6 HOH B 42 642 203 HOH HOH . J 6 HOH B 43 643 205 HOH HOH . J 6 HOH B 44 644 206 HOH HOH . J 6 HOH B 45 645 207 HOH HOH . J 6 HOH B 46 646 225 HOH HOH . J 6 HOH B 47 647 226 HOH HOH . J 6 HOH B 48 648 228 HOH HOH . J 6 HOH B 49 649 230 HOH HOH . J 6 HOH B 50 650 241 HOH HOH . J 6 HOH B 51 651 253 HOH HOH . J 6 HOH B 52 652 255 HOH HOH . J 6 HOH B 53 653 257 HOH HOH . J 6 HOH B 54 654 258 HOH HOH . K 6 HOH F 1 701 200 HOH HOH . K 6 HOH F 2 702 217 HOH HOH . K 6 HOH F 3 703 221 HOH HOH . L 6 HOH G 1 801 71 HOH HOH . L 6 HOH G 2 802 224 HOH HOH . L 6 HOH G 3 803 41 HOH HOH . L 6 HOH G 4 804 155 HOH HOH . L 6 HOH G 5 805 170 HOH HOH . L 6 HOH G 6 806 174 HOH HOH . L 6 HOH G 7 807 213 HOH HOH . L 6 HOH G 8 808 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . H 5 -6.025 28.518 5.276 1 39.47 ? CAC FLC 701 G 1 HETATM 2 C CA FLC . . . H 5 -5.487 27.483 4.278 1 38.12 ? CA FLC 701 G 1 HETATM 3 C CB FLC . . . H 5 -3.965 27.49 4.26 1 43.41 ? CB FLC 701 G 1 HETATM 4 C CBC FLC . . . H 5 -3.475 26.553 3.138 1 42.64 ? CBC FLC 701 G 1 HETATM 5 C CG FLC . . . H 5 -3.374 27.104 5.635 1 37.62 ? CG FLC 701 G 1 HETATM 6 C CGC FLC . . . H 5 -3.746 25.677 6.081 1 43.44 ? CGC FLC 701 G 1 HETATM 7 O OA1 FLC . . . H 5 -6.533 29.545 4.781 1 34.8 ? OA1 FLC 701 G 1 HETATM 8 O OA2 FLC . . . H 5 -5.899 28.282 6.502 1 37.46 ? OA2 FLC 701 G 1 HETATM 9 O OB1 FLC . . . H 5 -4.048 26.633 2.03 1 44.7 ? OB1 FLC 701 G 1 HETATM 10 O OB2 FLC . . . H 5 -2.557 25.759 3.42 1 42.99 ? OB2 FLC 701 G 1 HETATM 11 O OG1 FLC . . . H 5 -4.738 25.125 5.541 1 42.78 ? OG1 FLC 701 G 1 HETATM 12 O OG2 FLC . . . H 5 -3.003 25.135 6.937 1 45.14 ? OG2 FLC 701 G 1 HETATM 13 O OHB FLC . . . H 5 -3.524 28.831 3.977 1 45.53 ? OHB FLC 701 G 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 540 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #