data_4JYH # _model_server_result.job_id 8JBXbDEZlcBB5ZsiBucD7g _model_server_result.datetime_utc '2024-11-29 21:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4JYH # _exptl.entry_id 4JYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[(8-phenylnaphthalen-2-yl)carbonyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JYH _cell.length_a 58.3 _cell.length_b 84.14 _cell.length_c 108.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H17 N O3' _chem_comp.formula_weight 367.397 _chem_comp.id JYH _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[(8-phenylnaphthalen-2-yl)carbonyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAT JYH doub 190 n n CAT OAC JYH sing 191 n n CAT CAW JYH sing 192 n n CAM CAW JYH doub 193 n y CAM CAJ JYH sing 194 n y CAW CAN JYH sing 195 n y CAJ CAV JYH doub 196 n y CAD CAF JYH doub 197 n y CAD CAE JYH sing 198 n y CAF CAI JYH sing 199 n y OAB CAU JYH doub 200 n n CAN CAK JYH doub 201 n y CAE CAH JYH doub 202 n y CAV CAK JYH sing 203 n y CAV NAS JYH sing 204 n n CAI CAY JYH doub 205 n y CAU NAS JYH sing 206 n n CAU CAX JYH sing 207 n n CAH CAY JYH sing 208 n y CAY CAZ JYH sing 209 n n CAR CAX JYH doub 210 n y CAR CBB JYH sing 211 n y CAX CAO JYH sing 212 n y CAZ CBB JYH doub 213 n y CAZ CAL JYH sing 214 n y CBB CBA JYH sing 215 n y CAO CAQ JYH doub 216 n y CAL CAG JYH doub 217 n y CBA CAQ JYH sing 218 n y CBA CAP JYH doub 219 n y CAG CAP JYH sing 220 n y CAJ H1 JYH sing 221 n n CAM H2 JYH sing 222 n n OAC H3 JYH sing 223 n n CAN H4 JYH sing 224 n n CAK H5 JYH sing 225 n n NAS H6 JYH sing 226 n n CAR H7 JYH sing 227 n n CAO H8 JYH sing 228 n n CAQ H9 JYH sing 229 n n CAP H10 JYH sing 230 n n CAG H11 JYH sing 231 n n CAL H12 JYH sing 232 n n CAH H13 JYH sing 233 n n CAE H14 JYH sing 234 n n CAD H15 JYH sing 235 n n CAF H16 JYH sing 236 n n CAI H17 JYH sing 237 n n # _atom_sites.entry_id 4JYH _atom_sites.fract_transf_matrix[1][1] 0.017153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 JYH A 1 501 1 JYH JYH . F 3 JYH B 1 501 1 JYH JYH . G 4 FLC G 1 701 1 FLC FLC . H 5 HOH A 1 601 2 HOH HOH . H 5 HOH A 2 602 3 HOH HOH . H 5 HOH A 3 603 4 HOH HOH . H 5 HOH A 4 604 5 HOH HOH . H 5 HOH A 5 605 6 HOH HOH . H 5 HOH A 6 606 7 HOH HOH . H 5 HOH A 7 607 8 HOH HOH . H 5 HOH A 8 608 12 HOH HOH . H 5 HOH A 9 609 13 HOH HOH . H 5 HOH A 10 610 20 HOH HOH . H 5 HOH A 11 611 21 HOH HOH . H 5 HOH A 12 612 22 HOH HOH . H 5 HOH A 13 613 23 HOH HOH . H 5 HOH A 14 614 24 HOH HOH . H 5 HOH A 15 615 25 HOH HOH . H 5 HOH A 16 616 26 HOH HOH . H 5 HOH A 17 617 27 HOH HOH . H 5 HOH A 18 618 29 HOH HOH . H 5 HOH A 19 619 30 HOH HOH . H 5 HOH A 20 620 31 HOH HOH . H 5 HOH A 21 621 32 HOH HOH . H 5 HOH A 22 622 33 HOH HOH . H 5 HOH A 23 623 35 HOH HOH . H 5 HOH A 24 624 36 HOH HOH . H 5 HOH A 25 625 37 HOH HOH . H 5 HOH A 26 626 39 HOH HOH . H 5 HOH A 27 627 40 HOH HOH . H 5 HOH A 28 628 41 HOH HOH . H 5 HOH A 29 629 42 HOH HOH . H 5 HOH A 30 630 44 HOH HOH . H 5 HOH A 31 631 46 HOH HOH . H 5 HOH A 32 632 55 HOH HOH . H 5 HOH A 33 633 56 HOH HOH . H 5 HOH A 34 634 57 HOH HOH . H 5 HOH A 35 635 73 HOH HOH . H 5 HOH A 36 636 74 HOH HOH . H 5 HOH A 37 637 78 HOH HOH . H 5 HOH A 38 638 79 HOH HOH . H 5 HOH A 39 639 80 HOH HOH . H 5 HOH A 40 640 81 HOH HOH . H 5 HOH A 41 641 82 HOH HOH . H 5 HOH A 42 642 83 HOH HOH . H 5 HOH A 43 643 85 HOH HOH . H 5 HOH A 44 644 86 HOH HOH . H 5 HOH A 45 645 87 HOH HOH . H 5 HOH A 46 646 88 HOH HOH . H 5 HOH A 47 647 90 HOH HOH . H 5 HOH A 48 648 91 HOH HOH . H 5 HOH A 49 649 92 HOH HOH . H 5 HOH A 50 650 100 HOH HOH . H 5 HOH A 51 651 101 HOH HOH . H 5 HOH A 52 652 102 HOH HOH . H 5 HOH A 53 653 109 HOH HOH . H 5 HOH A 54 654 112 HOH HOH . H 5 HOH A 55 655 113 HOH HOH . H 5 HOH A 56 656 114 HOH HOH . H 5 HOH A 57 657 115 HOH HOH . H 5 HOH A 58 658 116 HOH HOH . H 5 HOH A 59 659 117 HOH HOH . H 5 HOH A 60 660 119 HOH HOH . H 5 HOH A 61 661 120 HOH HOH . H 5 HOH A 62 662 123 HOH HOH . H 5 HOH A 63 663 125 HOH HOH . H 5 HOH A 64 664 126 HOH HOH . H 5 HOH A 65 665 132 HOH HOH . H 5 HOH A 66 666 133 HOH HOH . H 5 HOH A 67 667 135 HOH HOH . H 5 HOH A 68 668 137 HOH HOH . H 5 HOH A 69 669 105 HOH HOH . H 5 HOH A 70 670 121 HOH HOH . I 5 HOH B 1 601 9 HOH HOH . I 5 HOH B 2 602 19 HOH HOH . I 5 HOH B 3 603 84 HOH HOH . I 5 HOH B 4 604 14 HOH HOH . I 5 HOH B 5 605 16 HOH HOH . I 5 HOH B 6 606 34 HOH HOH . I 5 HOH B 7 607 38 HOH HOH . I 5 HOH B 8 608 47 HOH HOH . I 5 HOH B 9 609 48 HOH HOH . I 5 HOH B 10 610 49 HOH HOH . I 5 HOH B 11 611 50 HOH HOH . I 5 HOH B 12 612 51 HOH HOH . I 5 HOH B 13 613 52 HOH HOH . I 5 HOH B 14 614 53 HOH HOH . I 5 HOH B 15 615 60 HOH HOH . I 5 HOH B 16 616 61 HOH HOH . I 5 HOH B 17 617 62 HOH HOH . I 5 HOH B 18 618 63 HOH HOH . I 5 HOH B 19 619 64 HOH HOH . I 5 HOH B 20 620 66 HOH HOH . I 5 HOH B 21 621 67 HOH HOH . I 5 HOH B 22 622 69 HOH HOH . I 5 HOH B 23 623 70 HOH HOH . I 5 HOH B 24 624 71 HOH HOH . I 5 HOH B 25 625 72 HOH HOH . I 5 HOH B 26 626 93 HOH HOH . I 5 HOH B 27 627 94 HOH HOH . I 5 HOH B 28 628 96 HOH HOH . I 5 HOH B 29 629 98 HOH HOH . I 5 HOH B 30 630 99 HOH HOH . I 5 HOH B 31 631 103 HOH HOH . I 5 HOH B 32 632 104 HOH HOH . I 5 HOH B 33 633 108 HOH HOH . I 5 HOH B 34 634 110 HOH HOH . I 5 HOH B 35 635 122 HOH HOH . I 5 HOH B 36 636 124 HOH HOH . I 5 HOH B 37 637 127 HOH HOH . I 5 HOH B 38 638 131 HOH HOH . I 5 HOH B 39 639 134 HOH HOH . I 5 HOH B 40 640 138 HOH HOH . J 5 HOH C 1 701 65 HOH HOH . K 5 HOH G 1 801 130 HOH HOH . K 5 HOH G 2 802 54 HOH HOH . K 5 HOH G 3 803 118 HOH HOH . K 5 HOH G 4 804 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ JYH . . . F 3 -15.231 -12.093 -34.243 1 39.09 ? CAJ JYH 501 B 1 HETATM 2 C CAM JYH . . . F 3 -16.345 -11.758 -35.038 1 38.22 ? CAM JYH 501 B 1 HETATM 3 C CAW JYH . . . F 3 -17.38 -10.954 -34.524 1 40.3 ? CAW JYH 501 B 1 HETATM 4 C CAT JYH . . . F 3 -18.529 -10.607 -35.291 1 42.57 ? CAT JYH 501 B 1 HETATM 5 O OAC JYH . . . F 3 -19.284 -9.645 -34.973 1 42.12 ? OAC JYH 501 B 1 HETATM 6 O OAA JYH . . . F 3 -18.85 -11.287 -36.291 1 42.67 ? OAA JYH 501 B 1 HETATM 7 C CAN JYH . . . F 3 -17.276 -10.507 -33.194 1 39 ? CAN JYH 501 B 1 HETATM 8 C CAK JYH . . . F 3 -16.165 -10.836 -32.416 1 37.8 ? CAK JYH 501 B 1 HETATM 9 C CAV JYH . . . F 3 -15.105 -11.609 -32.911 1 38.17 ? CAV JYH 501 B 1 HETATM 10 N NAS JYH . . . F 3 -14.114 -11.905 -32.021 1 39.59 ? NAS JYH 501 B 1 HETATM 11 C CAU JYH . . . F 3 -13.004 -12.7 -32.219 1 37.44 ? CAU JYH 501 B 1 HETATM 12 O OAB JYH . . . F 3 -12.633 -13.171 -33.303 1 34 ? OAB JYH 501 B 1 HETATM 13 C CAX JYH . . . F 3 -12.317 -13.067 -31.042 1 36.19 ? CAX JYH 501 B 1 HETATM 14 C CAR JYH . . . F 3 -11.111 -13.777 -31.11 1 37.41 ? CAR JYH 501 B 1 HETATM 15 C CBB JYH . . . F 3 -10.417 -14.221 -29.972 1 38.05 ? CBB JYH 501 B 1 HETATM 16 C CAO JYH . . . F 3 -12.881 -12.851 -29.78 1 37.41 ? CAO JYH 501 B 1 HETATM 17 C CAQ JYH . . . F 3 -12.203 -13.276 -28.625 1 36.26 ? CAQ JYH 501 B 1 HETATM 18 C CBA JYH . . . F 3 -10.983 -13.958 -28.712 1 38.42 ? CBA JYH 501 B 1 HETATM 19 C CAP JYH . . . F 3 -10.319 -14.37 -27.537 1 37.33 ? CAP JYH 501 B 1 HETATM 20 C CAG JYH . . . F 3 -9.096 -15.048 -27.597 1 36.94 ? CAG JYH 501 B 1 HETATM 21 C CAL JYH . . . F 3 -8.535 -15.31 -28.861 1 38.89 ? CAL JYH 501 B 1 HETATM 22 C CAZ JYH . . . F 3 -9.161 -14.895 -30.057 1 38.97 ? CAZ JYH 501 B 1 HETATM 23 C CAY JYH . . . F 3 -8.568 -15.183 -31.312 1 39.47 ? CAY JYH 501 B 1 HETATM 24 C CAH JYH . . . F 3 -8.283 -16.499 -31.696 1 40.23 ? CAH JYH 501 B 1 HETATM 25 C CAE JYH . . . F 3 -7.741 -16.772 -32.957 1 39.32 ? CAE JYH 501 B 1 HETATM 26 C CAD JYH . . . F 3 -7.46 -15.755 -33.858 1 38.37 ? CAD JYH 501 B 1 HETATM 27 C CAF JYH . . . F 3 -7.719 -14.445 -33.498 1 39.7 ? CAF JYH 501 B 1 HETATM 28 C CAI JYH . . . F 3 -8.27 -14.178 -32.237 1 40.1 ? CAI JYH 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #