data_4JYH # _model_server_result.job_id cnZ0YsQl1UXqTuSzAllV_A _model_server_result.datetime_utc '2024-10-24 20:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 4JYH # _exptl.entry_id 4JYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JYH _cell.length_a 58.3 _cell.length_b 84.14 _cell.length_c 108.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 4JYH _atom_sites.fract_transf_matrix[1][1] 0.017153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 JYH A 1 501 1 JYH JYH . F 3 JYH B 1 501 1 JYH JYH . G 4 FLC G 1 701 1 FLC FLC . H 5 HOH A 1 601 2 HOH HOH . H 5 HOH A 2 602 3 HOH HOH . H 5 HOH A 3 603 4 HOH HOH . H 5 HOH A 4 604 5 HOH HOH . H 5 HOH A 5 605 6 HOH HOH . H 5 HOH A 6 606 7 HOH HOH . H 5 HOH A 7 607 8 HOH HOH . H 5 HOH A 8 608 12 HOH HOH . H 5 HOH A 9 609 13 HOH HOH . H 5 HOH A 10 610 20 HOH HOH . H 5 HOH A 11 611 21 HOH HOH . H 5 HOH A 12 612 22 HOH HOH . H 5 HOH A 13 613 23 HOH HOH . H 5 HOH A 14 614 24 HOH HOH . H 5 HOH A 15 615 25 HOH HOH . H 5 HOH A 16 616 26 HOH HOH . H 5 HOH A 17 617 27 HOH HOH . H 5 HOH A 18 618 29 HOH HOH . H 5 HOH A 19 619 30 HOH HOH . H 5 HOH A 20 620 31 HOH HOH . H 5 HOH A 21 621 32 HOH HOH . H 5 HOH A 22 622 33 HOH HOH . H 5 HOH A 23 623 35 HOH HOH . H 5 HOH A 24 624 36 HOH HOH . H 5 HOH A 25 625 37 HOH HOH . H 5 HOH A 26 626 39 HOH HOH . H 5 HOH A 27 627 40 HOH HOH . H 5 HOH A 28 628 41 HOH HOH . H 5 HOH A 29 629 42 HOH HOH . H 5 HOH A 30 630 44 HOH HOH . H 5 HOH A 31 631 46 HOH HOH . H 5 HOH A 32 632 55 HOH HOH . H 5 HOH A 33 633 56 HOH HOH . H 5 HOH A 34 634 57 HOH HOH . H 5 HOH A 35 635 73 HOH HOH . H 5 HOH A 36 636 74 HOH HOH . H 5 HOH A 37 637 78 HOH HOH . H 5 HOH A 38 638 79 HOH HOH . H 5 HOH A 39 639 80 HOH HOH . H 5 HOH A 40 640 81 HOH HOH . H 5 HOH A 41 641 82 HOH HOH . H 5 HOH A 42 642 83 HOH HOH . H 5 HOH A 43 643 85 HOH HOH . H 5 HOH A 44 644 86 HOH HOH . H 5 HOH A 45 645 87 HOH HOH . H 5 HOH A 46 646 88 HOH HOH . H 5 HOH A 47 647 90 HOH HOH . H 5 HOH A 48 648 91 HOH HOH . H 5 HOH A 49 649 92 HOH HOH . H 5 HOH A 50 650 100 HOH HOH . H 5 HOH A 51 651 101 HOH HOH . H 5 HOH A 52 652 102 HOH HOH . H 5 HOH A 53 653 109 HOH HOH . H 5 HOH A 54 654 112 HOH HOH . H 5 HOH A 55 655 113 HOH HOH . H 5 HOH A 56 656 114 HOH HOH . H 5 HOH A 57 657 115 HOH HOH . H 5 HOH A 58 658 116 HOH HOH . H 5 HOH A 59 659 117 HOH HOH . H 5 HOH A 60 660 119 HOH HOH . H 5 HOH A 61 661 120 HOH HOH . H 5 HOH A 62 662 123 HOH HOH . H 5 HOH A 63 663 125 HOH HOH . H 5 HOH A 64 664 126 HOH HOH . H 5 HOH A 65 665 132 HOH HOH . H 5 HOH A 66 666 133 HOH HOH . H 5 HOH A 67 667 135 HOH HOH . H 5 HOH A 68 668 137 HOH HOH . H 5 HOH A 69 669 105 HOH HOH . H 5 HOH A 70 670 121 HOH HOH . I 5 HOH B 1 601 9 HOH HOH . I 5 HOH B 2 602 19 HOH HOH . I 5 HOH B 3 603 84 HOH HOH . I 5 HOH B 4 604 14 HOH HOH . I 5 HOH B 5 605 16 HOH HOH . I 5 HOH B 6 606 34 HOH HOH . I 5 HOH B 7 607 38 HOH HOH . I 5 HOH B 8 608 47 HOH HOH . I 5 HOH B 9 609 48 HOH HOH . I 5 HOH B 10 610 49 HOH HOH . I 5 HOH B 11 611 50 HOH HOH . I 5 HOH B 12 612 51 HOH HOH . I 5 HOH B 13 613 52 HOH HOH . I 5 HOH B 14 614 53 HOH HOH . I 5 HOH B 15 615 60 HOH HOH . I 5 HOH B 16 616 61 HOH HOH . I 5 HOH B 17 617 62 HOH HOH . I 5 HOH B 18 618 63 HOH HOH . I 5 HOH B 19 619 64 HOH HOH . I 5 HOH B 20 620 66 HOH HOH . I 5 HOH B 21 621 67 HOH HOH . I 5 HOH B 22 622 69 HOH HOH . I 5 HOH B 23 623 70 HOH HOH . I 5 HOH B 24 624 71 HOH HOH . I 5 HOH B 25 625 72 HOH HOH . I 5 HOH B 26 626 93 HOH HOH . I 5 HOH B 27 627 94 HOH HOH . I 5 HOH B 28 628 96 HOH HOH . I 5 HOH B 29 629 98 HOH HOH . I 5 HOH B 30 630 99 HOH HOH . I 5 HOH B 31 631 103 HOH HOH . I 5 HOH B 32 632 104 HOH HOH . I 5 HOH B 33 633 108 HOH HOH . I 5 HOH B 34 634 110 HOH HOH . I 5 HOH B 35 635 122 HOH HOH . I 5 HOH B 36 636 124 HOH HOH . I 5 HOH B 37 637 127 HOH HOH . I 5 HOH B 38 638 131 HOH HOH . I 5 HOH B 39 639 134 HOH HOH . I 5 HOH B 40 640 138 HOH HOH . J 5 HOH C 1 701 65 HOH HOH . K 5 HOH G 1 801 130 HOH HOH . K 5 HOH G 2 802 54 HOH HOH . K 5 HOH G 3 803 118 HOH HOH . K 5 HOH G 4 804 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . G 4 6.051 -28.448 5.448 1 42.5 ? CAC FLC 701 G 1 HETATM 2 C CA FLC . . . G 4 5.265 -27.208 5.913 1 45.56 ? CA FLC 701 G 1 HETATM 3 C CB FLC . . . G 4 4.025 -26.933 5.027 1 45.97 ? CB FLC 701 G 1 HETATM 4 C CBC FLC . . . G 4 3.714 -25.72 5.931 1 46.83 ? CBC FLC 701 G 1 HETATM 5 C CG FLC . . . G 4 4.959 -26.745 3.827 1 45.47 ? CG FLC 701 G 1 HETATM 6 C CGC FLC . . . G 4 4.113 -26.402 2.606 1 47.26 ? CGC FLC 701 G 1 HETATM 7 O OA1 FLC . . . G 4 6.939 -28.291 4.582 1 40.42 ? OA1 FLC 701 G 1 HETATM 8 O OA2 FLC . . . G 4 5.771 -29.53 6.006 1 40.97 ? OA2 FLC 701 G 1 HETATM 9 O OB1 FLC . . . G 4 4.411 -24.689 5.758 1 45.08 ? OB1 FLC 701 G 1 HETATM 10 O OB2 FLC . . . G 4 2.758 -25.826 6.742 1 47.48 ? OB2 FLC 701 G 1 HETATM 11 O OG1 FLC . . . G 4 3.029 -25.828 2.839 1 44.76 ? OG1 FLC 701 G 1 HETATM 12 O OG2 FLC . . . G 4 4.568 -26.7 1.478 1 48.87 ? OG2 FLC 701 G 1 HETATM 13 O OHB FLC . . . G 4 3.549 -28.246 5.381 1 44.31 ? OHB FLC 701 G 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 13 #