data_4JYO # _model_server_result.job_id dQI-hegl-73wi69CPORh-A _model_server_result.datetime_utc '2024-11-18 12:00:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4JYO # _exptl.entry_id 4JYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JYO _cell.length_a 80.968 _cell.length_b 80.968 _cell.length_c 187.216 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 X CYS 7 1_555 A SG CYS 41 X CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 161 X CYS 156 1_555 A SG CYS 163 X CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? disulf ? disulf3 A SG CYS 165 X CYS 160 1_555 A SG CYS 178 X CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc1 A OD1 ASP 157 X ASP 152 1_555 B CA CA . X CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc2 A OD2 ASP 157 X ASP 152 1_555 B CA CA . X CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc3 A OD1 ASP 159 X ASP 154 1_555 B CA CA . X CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A O CYS 161 X CYS 156 1_555 B CA CA . X CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc5 A O CYS 163 X CYS 158 1_555 B CA CA . X CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 B CA CA . X CA 301 1_555 C O HOH . X HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 B CA CA . X CA 301 1_555 C O HOH . X HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JYO _atom_sites.fract_transf_matrix[1][1] 0.012351 _atom_sites.fract_transf_matrix[1][2] 0.007131 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA X 1 301 1 CA CA . C 3 HOH X 1 401 1 HOH HOH . C 3 HOH X 2 402 2 HOH HOH . C 3 HOH X 3 403 3 HOH HOH . C 3 HOH X 4 404 4 HOH HOH . C 3 HOH X 5 405 5 HOH HOH . C 3 HOH X 6 406 6 HOH HOH . C 3 HOH X 7 407 7 HOH HOH . C 3 HOH X 8 408 8 HOH HOH . C 3 HOH X 9 409 9 HOH HOH . C 3 HOH X 10 410 10 HOH HOH . C 3 HOH X 11 411 11 HOH HOH . C 3 HOH X 12 412 12 HOH HOH . C 3 HOH X 13 413 13 HOH HOH . C 3 HOH X 14 414 14 HOH HOH . C 3 HOH X 15 415 15 HOH HOH . C 3 HOH X 16 416 16 HOH HOH . C 3 HOH X 17 417 17 HOH HOH . C 3 HOH X 18 418 19 HOH HOH . C 3 HOH X 19 419 20 HOH HOH . C 3 HOH X 20 420 21 HOH HOH . C 3 HOH X 21 421 22 HOH HOH . C 3 HOH X 22 422 23 HOH HOH . C 3 HOH X 23 423 25 HOH HOH . C 3 HOH X 24 424 28 HOH HOH . C 3 HOH X 25 425 29 HOH HOH . C 3 HOH X 26 426 30 HOH HOH . C 3 HOH X 27 427 31 HOH HOH . C 3 HOH X 28 428 32 HOH HOH . C 3 HOH X 29 429 33 HOH HOH . C 3 HOH X 30 430 34 HOH HOH . C 3 HOH X 31 431 35 HOH HOH . C 3 HOH X 32 432 36 HOH HOH . C 3 HOH X 33 433 37 HOH HOH . C 3 HOH X 34 434 42 HOH HOH . C 3 HOH X 35 435 43 HOH HOH . C 3 HOH X 36 436 47 HOH HOH . C 3 HOH X 37 437 49 HOH HOH . C 3 HOH X 38 438 54 HOH HOH . C 3 HOH X 39 439 56 HOH HOH . C 3 HOH X 40 440 57 HOH HOH . C 3 HOH X 41 441 58 HOH HOH . C 3 HOH X 42 442 59 HOH HOH . C 3 HOH X 43 443 60 HOH HOH . C 3 HOH X 44 444 61 HOH HOH . C 3 HOH X 45 445 62 HOH HOH . C 3 HOH X 46 446 63 HOH HOH . C 3 HOH X 47 447 66 HOH HOH . C 3 HOH X 48 448 68 HOH HOH . C 3 HOH X 49 449 76 HOH HOH . C 3 HOH X 50 450 78 HOH HOH . C 3 HOH X 51 451 79 HOH HOH . C 3 HOH X 52 452 80 HOH HOH . C 3 HOH X 53 453 82 HOH HOH . C 3 HOH X 54 454 84 HOH HOH . C 3 HOH X 55 455 85 HOH HOH . C 3 HOH X 56 456 86 HOH HOH . C 3 HOH X 57 457 87 HOH HOH . C 3 HOH X 58 458 88 HOH HOH . C 3 HOH X 59 459 90 HOH HOH . C 3 HOH X 60 460 94 HOH HOH . C 3 HOH X 61 461 95 HOH HOH . C 3 HOH X 62 462 97 HOH HOH . C 3 HOH X 63 463 101 HOH HOH . C 3 HOH X 64 464 103 HOH HOH . C 3 HOH X 65 465 108 HOH HOH . C 3 HOH X 66 466 109 HOH HOH . C 3 HOH X 67 467 114 HOH HOH . C 3 HOH X 68 468 120 HOH HOH . C 3 HOH X 69 469 127 HOH HOH . C 3 HOH X 70 470 204 HOH HOH . C 3 HOH X 71 471 210 HOH HOH . C 3 HOH X 72 472 217 HOH HOH . C 3 HOH X 73 473 228 HOH HOH . C 3 HOH X 74 474 229 HOH HOH . C 3 HOH X 75 475 231 HOH HOH . C 3 HOH X 76 476 234 HOH HOH . C 3 HOH X 77 477 235 HOH HOH . C 3 HOH X 78 478 246 HOH HOH . C 3 HOH X 79 479 253 HOH HOH . C 3 HOH X 80 480 274 HOH HOH . C 3 HOH X 81 481 276 HOH HOH . C 3 HOH X 82 482 278 HOH HOH . C 3 HOH X 83 483 287 HOH HOH . C 3 HOH X 84 484 288 HOH HOH . C 3 HOH X 85 485 289 HOH HOH . C 3 HOH X 86 486 292 HOH HOH . C 3 HOH X 87 487 293 HOH HOH . C 3 HOH X 88 488 296 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.05 _atom_site.Cartn_y 13.691 _atom_site.Cartn_z -13.361 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 509 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #