data_4JYV # _model_server_result.job_id e423ww1MQ9dVbaEEbEM4pg _model_server_result.datetime_utc '2025-07-05 13:13:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 4JYV # _exptl.entry_id 4JYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JYV _cell.length_a 95.2 _cell.length_b 95.2 _cell.length_c 117.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 26 H CYS 42 1_555 A SG CYS 42 H CYS 58 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 110 H CYS 122 1_555 B SG CYS 46 L CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 158 H CYS 168 1_555 A SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 A SG CYS 188 H CYS 191 1_555 A SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 2 L CYS 91 1_555 B SG CYS 13 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 9 L CYS 98 1_555 B SG CYS 23 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 25 L CYS 114 1_555 B SG CYS 38 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 A OE1 GLU 58 H GLU 70 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A O ASP 60 H ASP 72 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A O GLU 63 H GLU 75 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A OE2 GLU 68 H GLU 80 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc5 D CA CA . H CA 302 1_555 M O HOH . H HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 D CA CA . H CA 302 1_555 M O HOH . H HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 377 n n S O2 SO4 doub 378 n n S O3 SO4 sing 379 n n S O4 SO4 sing 380 n n # _atom_sites.entry_id 4JYV _atom_sites.fract_transf_matrix[1][1] 0.010504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1OJ H 1 301 1 1OJ LG1 . D 4 CA H 1 302 401 CA CA . E 5 SO4 H 1 303 402 SO4 SO4 . F 5 SO4 H 1 304 403 SO4 SO4 . G 5 SO4 H 1 305 404 SO4 SO4 . H 5 SO4 H 1 306 405 SO4 SO4 . I 6 GOL H 1 307 406 GOL GOL . J 6 GOL H 1 308 407 GOL GOL . K 6 GOL H 1 309 408 GOL GOL . L 6 GOL H 1 310 409 GOL GOL . M 7 HOH H 1 401 1 HOH HOH . M 7 HOH H 2 402 2 HOH HOH . M 7 HOH H 3 403 3 HOH HOH . M 7 HOH H 4 404 4 HOH HOH . M 7 HOH H 5 405 6 HOH HOH . M 7 HOH H 6 406 7 HOH HOH . M 7 HOH H 7 407 8 HOH HOH . M 7 HOH H 8 408 9 HOH HOH . M 7 HOH H 9 409 11 HOH HOH . M 7 HOH H 10 410 12 HOH HOH . M 7 HOH H 11 411 14 HOH HOH . M 7 HOH H 12 412 15 HOH HOH . M 7 HOH H 13 413 18 HOH HOH . M 7 HOH H 14 414 19 HOH HOH . M 7 HOH H 15 415 20 HOH HOH . M 7 HOH H 16 416 21 HOH HOH . M 7 HOH H 17 417 22 HOH HOH . M 7 HOH H 18 418 23 HOH HOH . M 7 HOH H 19 419 24 HOH HOH . M 7 HOH H 20 420 25 HOH HOH . M 7 HOH H 21 421 26 HOH HOH . M 7 HOH H 22 422 27 HOH HOH . M 7 HOH H 23 423 28 HOH HOH . M 7 HOH H 24 424 29 HOH HOH . M 7 HOH H 25 425 30 HOH HOH . M 7 HOH H 26 426 31 HOH HOH . M 7 HOH H 27 427 32 HOH HOH . M 7 HOH H 28 428 33 HOH HOH . M 7 HOH H 29 429 34 HOH HOH . M 7 HOH H 30 430 36 HOH HOH . M 7 HOH H 31 431 37 HOH HOH . M 7 HOH H 32 432 38 HOH HOH . M 7 HOH H 33 433 39 HOH HOH . M 7 HOH H 34 434 40 HOH HOH . M 7 HOH H 35 435 41 HOH HOH . M 7 HOH H 36 436 42 HOH HOH . M 7 HOH H 37 437 43 HOH HOH . M 7 HOH H 38 438 44 HOH HOH . M 7 HOH H 39 439 45 HOH HOH . M 7 HOH H 40 440 46 HOH HOH . M 7 HOH H 41 441 48 HOH HOH . M 7 HOH H 42 442 49 HOH HOH . M 7 HOH H 43 443 51 HOH HOH . M 7 HOH H 44 444 52 HOH HOH . M 7 HOH H 45 445 53 HOH HOH . M 7 HOH H 46 446 54 HOH HOH . M 7 HOH H 47 447 55 HOH HOH . M 7 HOH H 48 448 56 HOH HOH . M 7 HOH H 49 449 57 HOH HOH . M 7 HOH H 50 450 58 HOH HOH . M 7 HOH H 51 451 60 HOH HOH . M 7 HOH H 52 452 61 HOH HOH . M 7 HOH H 53 453 62 HOH HOH . M 7 HOH H 54 454 64 HOH HOH . M 7 HOH H 55 455 65 HOH HOH . M 7 HOH H 56 456 66 HOH HOH . M 7 HOH H 57 457 68 HOH HOH . M 7 HOH H 58 458 69 HOH HOH . M 7 HOH H 59 459 73 HOH HOH . M 7 HOH H 60 460 75 HOH HOH . M 7 HOH H 61 461 77 HOH HOH . M 7 HOH H 62 462 80 HOH HOH . M 7 HOH H 63 463 81 HOH HOH . M 7 HOH H 64 464 82 HOH HOH . M 7 HOH H 65 465 83 HOH HOH . M 7 HOH H 66 466 84 HOH HOH . M 7 HOH H 67 467 85 HOH HOH . M 7 HOH H 68 468 87 HOH HOH . M 7 HOH H 69 469 88 HOH HOH . M 7 HOH H 70 470 89 HOH HOH . M 7 HOH H 71 471 91 HOH HOH . M 7 HOH H 72 472 92 HOH HOH . M 7 HOH H 73 473 93 HOH HOH . M 7 HOH H 74 474 94 HOH HOH . M 7 HOH H 75 475 96 HOH HOH . M 7 HOH H 76 476 98 HOH HOH . M 7 HOH H 77 477 99 HOH HOH . M 7 HOH H 78 478 100 HOH HOH . M 7 HOH H 79 479 101 HOH HOH . M 7 HOH H 80 480 102 HOH HOH . M 7 HOH H 81 481 103 HOH HOH . M 7 HOH H 82 482 104 HOH HOH . M 7 HOH H 83 483 105 HOH HOH . M 7 HOH H 84 484 106 HOH HOH . M 7 HOH H 85 485 107 HOH HOH . M 7 HOH H 86 486 108 HOH HOH . M 7 HOH H 87 487 110 HOH HOH . M 7 HOH H 88 488 113 HOH HOH . M 7 HOH H 89 489 114 HOH HOH . M 7 HOH H 90 490 115 HOH HOH . M 7 HOH H 91 491 116 HOH HOH . M 7 HOH H 92 492 117 HOH HOH . M 7 HOH H 93 493 118 HOH HOH . M 7 HOH H 94 494 120 HOH HOH . M 7 HOH H 95 495 125 HOH HOH . M 7 HOH H 96 496 126 HOH HOH . M 7 HOH H 97 497 127 HOH HOH . M 7 HOH H 98 498 128 HOH HOH . M 7 HOH H 99 499 129 HOH HOH . M 7 HOH H 100 500 130 HOH HOH . M 7 HOH H 101 501 131 HOH HOH . M 7 HOH H 102 502 134 HOH HOH . M 7 HOH H 103 503 135 HOH HOH . M 7 HOH H 104 504 136 HOH HOH . M 7 HOH H 105 505 137 HOH HOH . M 7 HOH H 106 506 139 HOH HOH . M 7 HOH H 107 507 140 HOH HOH . M 7 HOH H 108 508 141 HOH HOH . M 7 HOH H 109 509 142 HOH HOH . M 7 HOH H 110 510 144 HOH HOH . M 7 HOH H 111 511 145 HOH HOH . M 7 HOH H 112 512 146 HOH HOH . M 7 HOH H 113 513 147 HOH HOH . M 7 HOH H 114 514 148 HOH HOH . M 7 HOH H 115 515 149 HOH HOH . M 7 HOH H 116 516 150 HOH HOH . M 7 HOH H 117 517 151 HOH HOH . M 7 HOH H 118 518 152 HOH HOH . M 7 HOH H 119 519 153 HOH HOH . M 7 HOH H 120 520 154 HOH HOH . M 7 HOH H 121 521 156 HOH HOH . M 7 HOH H 122 522 157 HOH HOH . M 7 HOH H 123 523 158 HOH HOH . M 7 HOH H 124 524 160 HOH HOH . M 7 HOH H 125 525 162 HOH HOH . M 7 HOH H 126 526 163 HOH HOH . M 7 HOH H 127 527 164 HOH HOH . M 7 HOH H 128 528 165 HOH HOH . M 7 HOH H 129 529 167 HOH HOH . M 7 HOH H 130 530 169 HOH HOH . M 7 HOH H 131 531 170 HOH HOH . M 7 HOH H 132 532 171 HOH HOH . M 7 HOH H 133 533 172 HOH HOH . M 7 HOH H 134 534 173 HOH HOH . M 7 HOH H 135 535 174 HOH HOH . M 7 HOH H 136 536 177 HOH HOH . M 7 HOH H 137 537 178 HOH HOH . M 7 HOH H 138 538 180 HOH HOH . M 7 HOH H 139 539 181 HOH HOH . M 7 HOH H 140 540 182 HOH HOH . M 7 HOH H 141 541 184 HOH HOH . M 7 HOH H 142 542 185 HOH HOH . M 7 HOH H 143 543 188 HOH HOH . M 7 HOH H 144 544 191 HOH HOH . M 7 HOH H 145 545 192 HOH HOH . M 7 HOH H 146 546 193 HOH HOH . M 7 HOH H 147 547 194 HOH HOH . M 7 HOH H 148 548 197 HOH HOH . M 7 HOH H 149 549 198 HOH HOH . M 7 HOH H 150 550 199 HOH HOH . M 7 HOH H 151 551 200 HOH HOH . M 7 HOH H 152 552 201 HOH HOH . M 7 HOH H 153 553 202 HOH HOH . M 7 HOH H 154 554 203 HOH HOH . M 7 HOH H 155 555 204 HOH HOH . M 7 HOH H 156 556 205 HOH HOH . M 7 HOH H 157 557 206 HOH HOH . M 7 HOH H 158 558 207 HOH HOH . M 7 HOH H 159 559 208 HOH HOH . M 7 HOH H 160 560 210 HOH HOH . M 7 HOH H 161 561 213 HOH HOH . M 7 HOH H 162 562 214 HOH HOH . M 7 HOH H 163 563 215 HOH HOH . M 7 HOH H 164 564 216 HOH HOH . M 7 HOH H 165 565 217 HOH HOH . M 7 HOH H 166 566 218 HOH HOH . M 7 HOH H 167 567 219 HOH HOH . M 7 HOH H 168 568 220 HOH HOH . M 7 HOH H 169 569 221 HOH HOH . M 7 HOH H 170 570 222 HOH HOH . M 7 HOH H 171 571 223 HOH HOH . M 7 HOH H 172 572 224 HOH HOH . M 7 HOH H 173 573 225 HOH HOH . M 7 HOH H 174 574 226 HOH HOH . M 7 HOH H 175 575 227 HOH HOH . M 7 HOH H 176 576 228 HOH HOH . M 7 HOH H 177 577 229 HOH HOH . M 7 HOH H 178 578 230 HOH HOH . M 7 HOH H 179 579 231 HOH HOH . M 7 HOH H 180 580 232 HOH HOH . M 7 HOH H 181 581 236 HOH HOH . M 7 HOH H 182 582 237 HOH HOH . M 7 HOH H 183 583 238 HOH HOH . M 7 HOH H 184 584 239 HOH HOH . M 7 HOH H 185 585 240 HOH HOH . M 7 HOH H 186 586 241 HOH HOH . M 7 HOH H 187 587 242 HOH HOH . M 7 HOH H 188 588 243 HOH HOH . M 7 HOH H 189 589 244 HOH HOH . M 7 HOH H 190 590 245 HOH HOH . N 7 HOH L 1 201 5 HOH HOH . N 7 HOH L 2 202 10 HOH HOH . N 7 HOH L 3 203 13 HOH HOH . N 7 HOH L 4 204 16 HOH HOH . N 7 HOH L 5 205 17 HOH HOH . N 7 HOH L 6 206 35 HOH HOH . N 7 HOH L 7 207 47 HOH HOH . N 7 HOH L 8 208 50 HOH HOH . N 7 HOH L 9 209 59 HOH HOH . N 7 HOH L 10 210 63 HOH HOH . N 7 HOH L 11 211 67 HOH HOH . N 7 HOH L 12 212 70 HOH HOH . N 7 HOH L 13 213 71 HOH HOH . N 7 HOH L 14 214 72 HOH HOH . N 7 HOH L 15 215 74 HOH HOH . N 7 HOH L 16 216 76 HOH HOH . N 7 HOH L 17 217 78 HOH HOH . N 7 HOH L 18 218 79 HOH HOH . N 7 HOH L 19 219 86 HOH HOH . N 7 HOH L 20 220 90 HOH HOH . N 7 HOH L 21 221 95 HOH HOH . N 7 HOH L 22 222 97 HOH HOH . N 7 HOH L 23 223 109 HOH HOH . N 7 HOH L 24 224 111 HOH HOH . N 7 HOH L 25 225 112 HOH HOH . N 7 HOH L 26 226 119 HOH HOH . N 7 HOH L 27 227 121 HOH HOH . N 7 HOH L 28 228 122 HOH HOH . N 7 HOH L 29 229 123 HOH HOH . N 7 HOH L 30 230 124 HOH HOH . N 7 HOH L 31 231 132 HOH HOH . N 7 HOH L 32 232 133 HOH HOH . N 7 HOH L 33 233 138 HOH HOH . N 7 HOH L 34 234 143 HOH HOH . N 7 HOH L 35 235 155 HOH HOH . N 7 HOH L 36 236 159 HOH HOH . N 7 HOH L 37 237 161 HOH HOH . N 7 HOH L 38 238 166 HOH HOH . N 7 HOH L 39 239 168 HOH HOH . N 7 HOH L 40 240 175 HOH HOH . N 7 HOH L 41 241 176 HOH HOH . N 7 HOH L 42 242 179 HOH HOH . N 7 HOH L 43 243 183 HOH HOH . N 7 HOH L 44 244 186 HOH HOH . N 7 HOH L 45 245 187 HOH HOH . N 7 HOH L 46 246 189 HOH HOH . N 7 HOH L 47 247 190 HOH HOH . N 7 HOH L 48 248 195 HOH HOH . N 7 HOH L 49 249 196 HOH HOH . N 7 HOH L 50 250 209 HOH HOH . N 7 HOH L 51 251 211 HOH HOH . N 7 HOH L 52 252 212 HOH HOH . N 7 HOH L 53 253 233 HOH HOH . N 7 HOH L 54 254 234 HOH HOH . N 7 HOH L 55 255 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 5 14.791 16.877 8.618 1 124.52 ? S SO4 306 H 1 HETATM 2 O O1 SO4 . . . H 5 16.228 16.963 8.404 1 124.14 ? O1 SO4 306 H 1 HETATM 3 O O2 SO4 . . . H 5 14.093 17.237 7.379 1 125 ? O2 SO4 306 H 1 HETATM 4 O O3 SO4 . . . H 5 14.44 15.507 8.991 1 125.09 ? O3 SO4 306 H 1 HETATM 5 O O4 SO4 . . . H 5 14.407 17.788 9.697 1 123.96 ? O4 SO4 306 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #