data_4JZ9 # _model_server_result.job_id HzGnB5sEVIXbe0eLPaBsVA _model_server_result.datetime_utc '2024-10-19 01:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4JZ9 # _exptl.entry_id 4JZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.22 _cell.angle_gamma 90 _cell.entry_id 4JZ9 _cell.length_a 69.922 _cell.length_b 92.74 _cell.length_c 101.836 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4JZ9 _atom_sites.fract_transf_matrix[1][1] 0.014302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00416 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CIT A 1 401 402 CIT CIT . F 2 CIT B 1 401 401 CIT CIT . G 2 CIT C 1 401 403 CIT CIT . H 2 CIT D 1 401 404 CIT CIT . I 3 HOH A 1 501 1014 HOH HOH . I 3 HOH A 2 502 1016 HOH HOH . I 3 HOH A 3 503 1021 HOH HOH . I 3 HOH A 4 504 1022 HOH HOH . I 3 HOH A 5 505 1026 HOH HOH . I 3 HOH A 6 506 1030 HOH HOH . I 3 HOH A 7 507 1032 HOH HOH . I 3 HOH A 8 508 1035 HOH HOH . I 3 HOH A 9 509 1036 HOH HOH . I 3 HOH A 10 510 1039 HOH HOH . I 3 HOH A 11 511 1040 HOH HOH . I 3 HOH A 12 512 1043 HOH HOH . I 3 HOH A 13 513 1046 HOH HOH . I 3 HOH A 14 514 1047 HOH HOH . I 3 HOH A 15 515 1055 HOH HOH . I 3 HOH A 16 516 1056 HOH HOH . I 3 HOH A 17 517 1058 HOH HOH . I 3 HOH A 18 518 1061 HOH HOH . I 3 HOH A 19 519 1062 HOH HOH . I 3 HOH A 20 520 1064 HOH HOH . I 3 HOH A 21 521 1072 HOH HOH . I 3 HOH A 22 522 1081 HOH HOH . I 3 HOH A 23 523 1082 HOH HOH . I 3 HOH A 24 524 1083 HOH HOH . I 3 HOH A 25 525 1087 HOH HOH . I 3 HOH A 26 526 1089 HOH HOH . I 3 HOH A 27 527 1096 HOH HOH . I 3 HOH A 28 528 1098 HOH HOH . I 3 HOH A 29 529 1099 HOH HOH . I 3 HOH A 30 530 1109 HOH HOH . I 3 HOH A 31 531 1112 HOH HOH . I 3 HOH A 32 532 1114 HOH HOH . I 3 HOH A 33 533 1120 HOH HOH . I 3 HOH A 34 534 1130 HOH HOH . I 3 HOH A 35 535 1137 HOH HOH . I 3 HOH A 36 536 1140 HOH HOH . I 3 HOH A 37 537 1145 HOH HOH . I 3 HOH A 38 538 1146 HOH HOH . I 3 HOH A 39 539 1147 HOH HOH . I 3 HOH A 40 540 1152 HOH HOH . I 3 HOH A 41 541 1156 HOH HOH . I 3 HOH A 42 542 1160 HOH HOH . I 3 HOH A 43 543 1165 HOH HOH . I 3 HOH A 44 544 1167 HOH HOH . I 3 HOH A 45 545 1168 HOH HOH . I 3 HOH A 46 546 1169 HOH HOH . I 3 HOH A 47 547 1171 HOH HOH . I 3 HOH A 48 548 1172 HOH HOH . I 3 HOH A 49 549 1174 HOH HOH . I 3 HOH A 50 550 1175 HOH HOH . I 3 HOH A 51 551 1180 HOH HOH . I 3 HOH A 52 552 1181 HOH HOH . I 3 HOH A 53 553 1183 HOH HOH . I 3 HOH A 54 554 1187 HOH HOH . I 3 HOH A 55 555 1192 HOH HOH . I 3 HOH A 56 556 1193 HOH HOH . I 3 HOH A 57 557 1197 HOH HOH . I 3 HOH A 58 558 1198 HOH HOH . I 3 HOH A 59 559 1203 HOH HOH . I 3 HOH A 60 560 1204 HOH HOH . I 3 HOH A 61 561 1205 HOH HOH . I 3 HOH A 62 562 1207 HOH HOH . I 3 HOH A 63 563 1212 HOH HOH . I 3 HOH A 64 564 1213 HOH HOH . I 3 HOH A 65 565 1219 HOH HOH . I 3 HOH A 66 566 1222 HOH HOH . I 3 HOH A 67 567 1223 HOH HOH . I 3 HOH A 68 568 1224 HOH HOH . I 3 HOH A 69 569 1225 HOH HOH . I 3 HOH A 70 570 1226 HOH HOH . I 3 HOH A 71 571 1227 HOH HOH . I 3 HOH A 72 572 1228 HOH HOH . I 3 HOH A 73 573 1229 HOH HOH . I 3 HOH A 74 574 1230 HOH HOH . I 3 HOH A 75 575 1231 HOH HOH . I 3 HOH A 76 576 1232 HOH HOH . I 3 HOH A 77 577 1233 HOH HOH . I 3 HOH A 78 578 1234 HOH HOH . I 3 HOH A 79 579 1236 HOH HOH . I 3 HOH A 80 580 1237 HOH HOH . I 3 HOH A 81 581 1238 HOH HOH . I 3 HOH A 82 582 1239 HOH HOH . I 3 HOH A 83 583 1240 HOH HOH . I 3 HOH A 84 584 1241 HOH HOH . I 3 HOH A 85 585 1242 HOH HOH . I 3 HOH A 86 586 1243 HOH HOH . I 3 HOH A 87 587 1244 HOH HOH . I 3 HOH A 88 588 1245 HOH HOH . I 3 HOH A 89 589 1246 HOH HOH . I 3 HOH A 90 590 1247 HOH HOH . J 3 HOH B 1 1001 1001 HOH HOH . J 3 HOH B 2 1002 1003 HOH HOH . J 3 HOH B 3 1003 1006 HOH HOH . J 3 HOH B 4 1004 1010 HOH HOH . J 3 HOH B 5 1005 1017 HOH HOH . J 3 HOH B 6 1006 1018 HOH HOH . J 3 HOH B 7 1007 1020 HOH HOH . J 3 HOH B 8 1008 1029 HOH HOH . J 3 HOH B 9 1009 1033 HOH HOH . J 3 HOH B 10 1010 1051 HOH HOH . J 3 HOH B 11 1011 1059 HOH HOH . J 3 HOH B 12 1012 1060 HOH HOH . J 3 HOH B 13 1013 1066 HOH HOH . J 3 HOH B 14 1014 1069 HOH HOH . J 3 HOH B 15 1015 1076 HOH HOH . J 3 HOH B 16 1016 1077 HOH HOH . J 3 HOH B 17 1017 1088 HOH HOH . J 3 HOH B 18 1018 1092 HOH HOH . J 3 HOH B 19 1019 1094 HOH HOH . J 3 HOH B 20 1020 1097 HOH HOH . J 3 HOH B 21 1021 1100 HOH HOH . J 3 HOH B 22 1022 1101 HOH HOH . J 3 HOH B 23 1023 1102 HOH HOH . J 3 HOH B 24 1024 1104 HOH HOH . J 3 HOH B 25 1025 1105 HOH HOH . J 3 HOH B 26 1026 1113 HOH HOH . J 3 HOH B 27 1027 1115 HOH HOH . J 3 HOH B 28 1028 1117 HOH HOH . J 3 HOH B 29 1029 1118 HOH HOH . J 3 HOH B 30 1030 1131 HOH HOH . J 3 HOH B 31 1031 1133 HOH HOH . J 3 HOH B 32 1032 1136 HOH HOH . J 3 HOH B 33 1033 1138 HOH HOH . J 3 HOH B 34 1034 1149 HOH HOH . J 3 HOH B 35 1035 1150 HOH HOH . J 3 HOH B 36 1036 1155 HOH HOH . J 3 HOH B 37 1037 1157 HOH HOH . J 3 HOH B 38 1038 1162 HOH HOH . J 3 HOH B 39 1039 1163 HOH HOH . J 3 HOH B 40 1040 1170 HOH HOH . J 3 HOH B 41 1041 1176 HOH HOH . J 3 HOH B 42 1042 1184 HOH HOH . J 3 HOH B 43 1043 1185 HOH HOH . J 3 HOH B 44 1044 1188 HOH HOH . J 3 HOH B 45 1045 1191 HOH HOH . J 3 HOH B 46 1046 1195 HOH HOH . J 3 HOH B 47 1047 1196 HOH HOH . J 3 HOH B 48 1048 1199 HOH HOH . J 3 HOH B 49 1049 1215 HOH HOH . J 3 HOH B 50 1050 1221 HOH HOH . J 3 HOH B 51 1051 1235 HOH HOH . J 3 HOH B 52 1052 1248 HOH HOH . J 3 HOH B 53 1053 1249 HOH HOH . J 3 HOH B 54 1054 1250 HOH HOH . J 3 HOH B 55 1055 1251 HOH HOH . J 3 HOH B 56 1056 1252 HOH HOH . J 3 HOH B 57 1057 1253 HOH HOH . J 3 HOH B 58 1058 1254 HOH HOH . J 3 HOH B 59 1059 1255 HOH HOH . J 3 HOH B 60 1060 1256 HOH HOH . J 3 HOH B 61 1061 1257 HOH HOH . J 3 HOH B 62 1062 1258 HOH HOH . J 3 HOH B 63 1063 1259 HOH HOH . J 3 HOH B 64 1064 1260 HOH HOH . J 3 HOH B 65 1065 1261 HOH HOH . K 3 HOH C 1 501 1002 HOH HOH . K 3 HOH C 2 502 1004 HOH HOH . K 3 HOH C 3 503 1005 HOH HOH . K 3 HOH C 4 504 1011 HOH HOH . K 3 HOH C 5 505 1013 HOH HOH . K 3 HOH C 6 506 1015 HOH HOH . K 3 HOH C 7 507 1019 HOH HOH . K 3 HOH C 8 508 1028 HOH HOH . K 3 HOH C 9 509 1031 HOH HOH . K 3 HOH C 10 510 1034 HOH HOH . K 3 HOH C 11 511 1037 HOH HOH . K 3 HOH C 12 512 1048 HOH HOH . K 3 HOH C 13 513 1049 HOH HOH . K 3 HOH C 14 514 1052 HOH HOH . K 3 HOH C 15 515 1053 HOH HOH . K 3 HOH C 16 516 1054 HOH HOH . K 3 HOH C 17 517 1057 HOH HOH . K 3 HOH C 18 518 1063 HOH HOH . K 3 HOH C 19 519 1065 HOH HOH . K 3 HOH C 20 520 1067 HOH HOH . K 3 HOH C 21 521 1070 HOH HOH . K 3 HOH C 22 522 1074 HOH HOH . K 3 HOH C 23 523 1078 HOH HOH . K 3 HOH C 24 524 1079 HOH HOH . K 3 HOH C 25 525 1091 HOH HOH . K 3 HOH C 26 526 1093 HOH HOH . K 3 HOH C 27 527 1095 HOH HOH . K 3 HOH C 28 528 1103 HOH HOH . K 3 HOH C 29 529 1106 HOH HOH . K 3 HOH C 30 530 1107 HOH HOH . K 3 HOH C 31 531 1110 HOH HOH . K 3 HOH C 32 532 1111 HOH HOH . K 3 HOH C 33 533 1116 HOH HOH . K 3 HOH C 34 534 1119 HOH HOH . K 3 HOH C 35 535 1121 HOH HOH . K 3 HOH C 36 536 1122 HOH HOH . K 3 HOH C 37 537 1123 HOH HOH . K 3 HOH C 38 538 1124 HOH HOH . K 3 HOH C 39 539 1126 HOH HOH . K 3 HOH C 40 540 1128 HOH HOH . K 3 HOH C 41 541 1129 HOH HOH . K 3 HOH C 42 542 1135 HOH HOH . K 3 HOH C 43 543 1143 HOH HOH . K 3 HOH C 44 544 1151 HOH HOH . K 3 HOH C 45 545 1153 HOH HOH . K 3 HOH C 46 546 1159 HOH HOH . K 3 HOH C 47 547 1173 HOH HOH . K 3 HOH C 48 548 1177 HOH HOH . K 3 HOH C 49 549 1178 HOH HOH . K 3 HOH C 50 550 1186 HOH HOH . K 3 HOH C 51 551 1190 HOH HOH . K 3 HOH C 52 552 1194 HOH HOH . K 3 HOH C 53 553 1200 HOH HOH . K 3 HOH C 54 554 1202 HOH HOH . K 3 HOH C 55 555 1206 HOH HOH . K 3 HOH C 56 556 1208 HOH HOH . K 3 HOH C 57 557 1209 HOH HOH . K 3 HOH C 58 558 1211 HOH HOH . K 3 HOH C 59 559 1216 HOH HOH . K 3 HOH C 60 560 1217 HOH HOH . K 3 HOH C 61 561 1218 HOH HOH . K 3 HOH C 62 562 1220 HOH HOH . K 3 HOH C 63 563 1262 HOH HOH . K 3 HOH C 64 564 1263 HOH HOH . K 3 HOH C 65 565 1264 HOH HOH . K 3 HOH C 66 566 1265 HOH HOH . K 3 HOH C 67 567 1266 HOH HOH . K 3 HOH C 68 568 1267 HOH HOH . K 3 HOH C 69 569 1273 HOH HOH . K 3 HOH C 70 570 1275 HOH HOH . L 3 HOH D 1 501 1007 HOH HOH . L 3 HOH D 2 502 1008 HOH HOH . L 3 HOH D 3 503 1009 HOH HOH . L 3 HOH D 4 504 1012 HOH HOH . L 3 HOH D 5 505 1023 HOH HOH . L 3 HOH D 6 506 1024 HOH HOH . L 3 HOH D 7 507 1025 HOH HOH . L 3 HOH D 8 508 1027 HOH HOH . L 3 HOH D 9 509 1038 HOH HOH . L 3 HOH D 10 510 1041 HOH HOH . L 3 HOH D 11 511 1042 HOH HOH . L 3 HOH D 12 512 1044 HOH HOH . L 3 HOH D 13 513 1045 HOH HOH . L 3 HOH D 14 514 1050 HOH HOH . L 3 HOH D 15 515 1068 HOH HOH . L 3 HOH D 16 516 1071 HOH HOH . L 3 HOH D 17 517 1073 HOH HOH . L 3 HOH D 18 518 1075 HOH HOH . L 3 HOH D 19 519 1080 HOH HOH . L 3 HOH D 20 520 1084 HOH HOH . L 3 HOH D 21 521 1085 HOH HOH . L 3 HOH D 22 522 1086 HOH HOH . L 3 HOH D 23 523 1090 HOH HOH . L 3 HOH D 24 524 1108 HOH HOH . L 3 HOH D 25 525 1125 HOH HOH . L 3 HOH D 26 526 1127 HOH HOH . L 3 HOH D 27 527 1132 HOH HOH . L 3 HOH D 28 528 1134 HOH HOH . L 3 HOH D 29 529 1139 HOH HOH . L 3 HOH D 30 530 1141 HOH HOH . L 3 HOH D 31 531 1142 HOH HOH . L 3 HOH D 32 532 1144 HOH HOH . L 3 HOH D 33 533 1148 HOH HOH . L 3 HOH D 34 534 1154 HOH HOH . L 3 HOH D 35 535 1158 HOH HOH . L 3 HOH D 36 536 1161 HOH HOH . L 3 HOH D 37 537 1164 HOH HOH . L 3 HOH D 38 538 1166 HOH HOH . L 3 HOH D 39 539 1179 HOH HOH . L 3 HOH D 40 540 1182 HOH HOH . L 3 HOH D 41 541 1189 HOH HOH . L 3 HOH D 42 542 1201 HOH HOH . L 3 HOH D 43 543 1210 HOH HOH . L 3 HOH D 44 544 1214 HOH HOH . L 3 HOH D 45 545 1268 HOH HOH . L 3 HOH D 46 546 1269 HOH HOH . L 3 HOH D 47 547 1270 HOH HOH . L 3 HOH D 48 548 1271 HOH HOH . L 3 HOH D 49 549 1272 HOH HOH . L 3 HOH D 50 550 1274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 2 51.62 70.626 54.468 1 57.95 ? C1 CIT 401 A 1 HETATM 2 O O1 CIT . . . E 2 52.258 69.827 53.735 1 59.46 ? O1 CIT 401 A 1 HETATM 3 O O2 CIT . . . E 2 51.045 71.611 53.911 1 53.6 ? O2 CIT 401 A 1 HETATM 4 C C2 CIT . . . E 2 51.601 70.335 55.969 1 48.12 ? C2 CIT 401 A 1 HETATM 5 C C3 CIT . . . E 2 51.178 71.44 56.965 1 50.13 ? C3 CIT 401 A 1 HETATM 6 O O7 CIT . . . E 2 51.903 72.692 56.825 1 38.86 ? O7 CIT 401 A 1 HETATM 7 C C4 CIT . . . E 2 51.461 70.928 58.38 1 45.69 ? C4 CIT 401 A 1 HETATM 8 C C5 CIT . . . E 2 52.314 71.938 59.097 1 53.78 ? C5 CIT 401 A 1 HETATM 9 O O3 CIT . . . E 2 53.515 71.686 59.368 1 58.15 ? O3 CIT 401 A 1 HETATM 10 O O4 CIT . . . E 2 51.81 73.045 59.416 1 53.63 ? O4 CIT 401 A 1 HETATM 11 C C6 CIT . . . E 2 49.694 71.78 56.79 1 43.7 ? C6 CIT 401 A 1 HETATM 12 O O5 CIT . . . E 2 49.368 72.936 56.436 1 44.1 ? O5 CIT 401 A 1 HETATM 13 O O6 CIT . . . E 2 48.792 70.933 56.992 1 44.07 ? O6 CIT 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #