data_4JZJ # _model_server_result.job_id Q2xVz2KtP-uUB6FOPEm1Kg _model_server_result.datetime_utc '2024-11-01 20:41:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":409}' # _entry.id 4JZJ # _exptl.entry_id 4JZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.45 _cell.angle_gamma 90 _cell.entry_id 4JZJ _cell.length_a 88.3 _cell.length_b 120.648 _cell.length_c 92.968 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 6 1 FUL NAG C1 O1 . O3 HO3 . sing 6 ? 4 7 1 FUL NAG C1 O1 . O6 HO6 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 5 4 1 FUL NAG C1 O1 . O3 HO3 . sing 10 ? 5 5 1 FUL NAG C1 O1 . O6 HO6 . sing 11 ? 6 2 1 FUC NAG C1 O1 . O3 HO3 . sing 12 ? 6 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 E 1 NAG C 401 NAG 4 n G NAG 2 E 2 NAG C 404 NAG 4 n G BMA 3 E 3 BMA C 405 BMA 4 n G MAN 4 E 4 MAN C 407 MAN 4 n G MAN 5 E 5 MAN C 406 MAN 4 n G FUL 6 E 6 FUL E 402 FUL 4 n G FUL 7 E 7 FUL C 403 FUL 5 n H NAG 1 F 1 NAG D 401 NAG 5 n H NAG 2 F 2 NAG D 402 NAG 5 n H BMA 3 F 3 BMA D 403 BMA 5 n H FUL 4 F 4 FUL F 403 FUL 5 n H FUL 5 F 5 FUL D 404 FUL 6 n I NAG 1 G 1 NAG D 407 NAG 6 n I FUC 2 G 2 FUC D 408 FUC 6 n I FUL 3 G 3 FUL D 406 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 C CYS 52 1_555 A SG CYS 49 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 57 C CYS 76 1_555 A SG CYS 175 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 A SG CYS 93 C CYS 112 1_555 A SG CYS 103 C CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 131 C CYS 150 1_555 A SG CYS 145 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 33 D CYS 52 1_555 B SG CYS 49 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 57 D CYS 76 1_555 B SG CYS 175 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 B SG CYS 93 D CYS 112 1_555 B SG CYS 103 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 B SG CYS 131 D CYS 150 1_555 B SG CYS 145 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 C SG CYS 147 A CYS 147 1_555 C SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 D SG CYS 23 B CYS 23 1_555 D SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 140 B CYS 140 1_555 D SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 E SG CYS 147 H CYS 147 1_555 E SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 F SG CYS 23 L CYS 23 1_555 F SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf16 F SG CYS 140 L CYS 140 1_555 F SG CYS 200 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 27 C ASN 46 1_555 J C1 NAG . C NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? covale ? covale2 A ND2 ASN 61 C ASN 80 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? covale ? covale3 B ND2 ASN 61 D ASN 80 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 B ND2 ASN 90 D ASN 109 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale5 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale6 G O3 NAG . E NAG 1 1_555 G C1 FUL . E FUL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale7 G O6 NAG . E NAG 1 1_555 G C1 FUL . E FUL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale8 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 G O3 BMA . E BMA 3 1_555 G C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 G O6 BMA . E BMA 3 1_555 G C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale12 H O3 NAG . F NAG 1 1_555 H C1 FUL . F FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 H O6 NAG . F NAG 1 1_555 H C1 FUL . F FUL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale14 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 I O3 NAG . G NAG 1 1_555 I C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale16 I O6 NAG . G NAG 1 1_555 I C1 FUL . G FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 344 n n C1 O1 NAG sing 345 n n C1 O5 NAG sing 346 n n C1 H1 NAG sing 347 n n C2 C3 NAG sing 348 n n C2 N2 NAG sing 349 n n C2 H2 NAG sing 350 n n C3 C4 NAG sing 351 n n C3 O3 NAG sing 352 n n C3 H3 NAG sing 353 n n C4 C5 NAG sing 354 n n C4 O4 NAG sing 355 n n C4 H4 NAG sing 356 n n C5 C6 NAG sing 357 n n C5 O5 NAG sing 358 n n C5 H5 NAG sing 359 n n C6 O6 NAG sing 360 n n C6 H61 NAG sing 361 n n C6 H62 NAG sing 362 n n C7 C8 NAG sing 363 n n C7 N2 NAG sing 364 n n C7 O7 NAG doub 365 n n C8 H81 NAG sing 366 n n C8 H82 NAG sing 367 n n C8 H83 NAG sing 368 n n N2 HN2 NAG sing 369 n n O1 HO1 NAG sing 370 n n O3 HO3 NAG sing 371 n n O4 HO4 NAG sing 372 n n O6 HO6 NAG sing 373 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4JZJ _atom_sites.fract_transf_matrix[1][1] 0.011325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 NAG C 1 408 408 NAG NAG . K 7 NAG D 1 409 409 NAG NAG . L 8 GOL D 1 410 410 GOL GOL . M 8 GOL H 1 301 301 GOL GOL . N 9 HOH C 1 501 501 HOH HOH . N 9 HOH C 2 502 502 HOH HOH . N 9 HOH C 3 503 503 HOH HOH . N 9 HOH C 4 504 504 HOH HOH . N 9 HOH C 5 505 505 HOH HOH . N 9 HOH C 6 506 506 HOH HOH . N 9 HOH C 7 507 507 HOH HOH . N 9 HOH C 8 508 508 HOH HOH . N 9 HOH C 9 509 509 HOH HOH . O 9 HOH D 1 501 501 HOH HOH . O 9 HOH D 2 502 502 HOH HOH . O 9 HOH D 3 503 503 HOH HOH . O 9 HOH D 4 504 504 HOH HOH . O 9 HOH D 5 505 505 HOH HOH . O 9 HOH D 6 506 506 HOH HOH . O 9 HOH D 7 507 507 HOH HOH . P 9 HOH A 1 401 401 HOH HOH . P 9 HOH A 2 402 402 HOH HOH . Q 9 HOH B 1 301 301 HOH HOH . Q 9 HOH B 2 302 302 HOH HOH . Q 9 HOH B 3 303 303 HOH HOH . Q 9 HOH B 4 304 304 HOH HOH . Q 9 HOH B 5 305 305 HOH HOH . Q 9 HOH B 6 306 306 HOH HOH . R 9 HOH H 1 401 401 HOH HOH . R 9 HOH H 2 402 402 HOH HOH . R 9 HOH H 3 403 403 HOH HOH . R 9 HOH H 4 404 404 HOH HOH . R 9 HOH H 5 405 405 HOH HOH . R 9 HOH H 6 406 406 HOH HOH . R 9 HOH H 7 407 407 HOH HOH . R 9 HOH H 8 408 408 HOH HOH . R 9 HOH H 9 409 409 HOH HOH . R 9 HOH H 10 410 410 HOH HOH . R 9 HOH H 11 411 411 HOH HOH . R 9 HOH H 12 412 412 HOH HOH . S 9 HOH L 1 301 301 HOH HOH . S 9 HOH L 2 302 302 HOH HOH . S 9 HOH L 3 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 7 -24.861 44.002 -47.848 1 81.18 ? C1 NAG 409 D 1 HETATM 2 C C2 NAG . . . K 7 -23.852 44.697 -48.725 1 81.34 ? C2 NAG 409 D 1 HETATM 3 C C3 NAG . . . K 7 -23.766 46.11 -48.161 1 81.32 ? C3 NAG 409 D 1 HETATM 4 C C4 NAG . . . K 7 -25.165 46.753 -48.098 1 81.34 ? C4 NAG 409 D 1 HETATM 5 C C5 NAG . . . K 7 -26.321 45.78 -47.811 1 81.17 ? C5 NAG 409 D 1 HETATM 6 C C6 NAG . . . K 7 -27.641 46.304 -48.37 1 81.19 ? C6 NAG 409 D 1 HETATM 7 C C7 NAG . . . K 7 -22.403 42.885 -49.473 1 81.62 ? C7 NAG 409 D 1 HETATM 8 C C8 NAG . . . K 7 -21.542 41.81 -48.884 1 81.58 ? C8 NAG 409 D 1 HETATM 9 N N2 NAG . . . K 7 -22.595 43.972 -48.722 1 81.48 ? N2 NAG 409 D 1 HETATM 10 O O3 NAG . . . K 7 -22.889 46.89 -48.943 1 81.21 ? O3 NAG 409 D 1 HETATM 11 O O4 NAG . . . K 7 -25.192 47.753 -47.099 1 81.4 ? O4 NAG 409 D 1 HETATM 12 O O5 NAG . . . K 7 -26.083 44.491 -48.337 1 81.04 ? O5 NAG 409 D 1 HETATM 13 O O6 NAG . . . K 7 -28.721 45.584 -47.816 1 81.21 ? O6 NAG 409 D 1 HETATM 14 O O7 NAG . . . K 7 -22.88 42.734 -50.599 1 81.79 ? O7 NAG 409 D 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #