data_4JZJ # _model_server_result.job_id bfCBFttE-YgOhzksa3YVxA _model_server_result.datetime_utc '2024-11-01 20:40:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":410}' # _entry.id 4JZJ # _exptl.entry_id 4JZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.45 _cell.angle_gamma 90 _cell.entry_id 4JZJ _cell.length_a 88.3 _cell.length_b 120.648 _cell.length_c 92.968 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 6 1 FUL NAG C1 O1 . O3 HO3 . sing 6 ? 4 7 1 FUL NAG C1 O1 . O6 HO6 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 5 4 1 FUL NAG C1 O1 . O3 HO3 . sing 10 ? 5 5 1 FUL NAG C1 O1 . O6 HO6 . sing 11 ? 6 2 1 FUC NAG C1 O1 . O3 HO3 . sing 12 ? 6 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 E 1 NAG C 401 NAG 4 n G NAG 2 E 2 NAG C 404 NAG 4 n G BMA 3 E 3 BMA C 405 BMA 4 n G MAN 4 E 4 MAN C 407 MAN 4 n G MAN 5 E 5 MAN C 406 MAN 4 n G FUL 6 E 6 FUL E 402 FUL 4 n G FUL 7 E 7 FUL C 403 FUL 5 n H NAG 1 F 1 NAG D 401 NAG 5 n H NAG 2 F 2 NAG D 402 NAG 5 n H BMA 3 F 3 BMA D 403 BMA 5 n H FUL 4 F 4 FUL F 403 FUL 5 n H FUL 5 F 5 FUL D 404 FUL 6 n I NAG 1 G 1 NAG D 407 NAG 6 n I FUC 2 G 2 FUC D 408 FUC 6 n I FUL 3 G 3 FUL D 406 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 C CYS 52 1_555 A SG CYS 49 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 57 C CYS 76 1_555 A SG CYS 175 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 A SG CYS 93 C CYS 112 1_555 A SG CYS 103 C CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 131 C CYS 150 1_555 A SG CYS 145 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 33 D CYS 52 1_555 B SG CYS 49 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 57 D CYS 76 1_555 B SG CYS 175 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 B SG CYS 93 D CYS 112 1_555 B SG CYS 103 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 B SG CYS 131 D CYS 150 1_555 B SG CYS 145 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 C SG CYS 147 A CYS 147 1_555 C SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 D SG CYS 23 B CYS 23 1_555 D SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 140 B CYS 140 1_555 D SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 E SG CYS 147 H CYS 147 1_555 E SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 F SG CYS 23 L CYS 23 1_555 F SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf16 F SG CYS 140 L CYS 140 1_555 F SG CYS 200 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 27 C ASN 46 1_555 J C1 NAG . C NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? covale ? covale2 A ND2 ASN 61 C ASN 80 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? covale ? covale3 B ND2 ASN 61 D ASN 80 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 B ND2 ASN 90 D ASN 109 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale5 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale6 G O3 NAG . E NAG 1 1_555 G C1 FUL . E FUL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale7 G O6 NAG . E NAG 1 1_555 G C1 FUL . E FUL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale8 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 G O3 BMA . E BMA 3 1_555 G C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 G O6 BMA . E BMA 3 1_555 G C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale12 H O3 NAG . F NAG 1 1_555 H C1 FUL . F FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 H O6 NAG . F NAG 1 1_555 H C1 FUL . F FUL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale14 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 I O3 NAG . G NAG 1 1_555 I C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale16 I O6 NAG . G NAG 1 1_555 I C1 FUL . G FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 199 n n C1 C2 GOL sing 200 n n C1 H11 GOL sing 201 n n C1 H12 GOL sing 202 n n O1 HO1 GOL sing 203 n n C2 O2 GOL sing 204 n n C2 C3 GOL sing 205 n n C2 H2 GOL sing 206 n n O2 HO2 GOL sing 207 n n C3 O3 GOL sing 208 n n C3 H31 GOL sing 209 n n C3 H32 GOL sing 210 n n O3 HO3 GOL sing 211 n n # _atom_sites.entry_id 4JZJ _atom_sites.fract_transf_matrix[1][1] 0.011325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 NAG C 1 408 408 NAG NAG . K 7 NAG D 1 409 409 NAG NAG . L 8 GOL D 1 410 410 GOL GOL . M 8 GOL H 1 301 301 GOL GOL . N 9 HOH C 1 501 501 HOH HOH . N 9 HOH C 2 502 502 HOH HOH . N 9 HOH C 3 503 503 HOH HOH . N 9 HOH C 4 504 504 HOH HOH . N 9 HOH C 5 505 505 HOH HOH . N 9 HOH C 6 506 506 HOH HOH . N 9 HOH C 7 507 507 HOH HOH . N 9 HOH C 8 508 508 HOH HOH . N 9 HOH C 9 509 509 HOH HOH . O 9 HOH D 1 501 501 HOH HOH . O 9 HOH D 2 502 502 HOH HOH . O 9 HOH D 3 503 503 HOH HOH . O 9 HOH D 4 504 504 HOH HOH . O 9 HOH D 5 505 505 HOH HOH . O 9 HOH D 6 506 506 HOH HOH . O 9 HOH D 7 507 507 HOH HOH . P 9 HOH A 1 401 401 HOH HOH . P 9 HOH A 2 402 402 HOH HOH . Q 9 HOH B 1 301 301 HOH HOH . Q 9 HOH B 2 302 302 HOH HOH . Q 9 HOH B 3 303 303 HOH HOH . Q 9 HOH B 4 304 304 HOH HOH . Q 9 HOH B 5 305 305 HOH HOH . Q 9 HOH B 6 306 306 HOH HOH . R 9 HOH H 1 401 401 HOH HOH . R 9 HOH H 2 402 402 HOH HOH . R 9 HOH H 3 403 403 HOH HOH . R 9 HOH H 4 404 404 HOH HOH . R 9 HOH H 5 405 405 HOH HOH . R 9 HOH H 6 406 406 HOH HOH . R 9 HOH H 7 407 407 HOH HOH . R 9 HOH H 8 408 408 HOH HOH . R 9 HOH H 9 409 409 HOH HOH . R 9 HOH H 10 410 410 HOH HOH . R 9 HOH H 11 411 411 HOH HOH . R 9 HOH H 12 412 412 HOH HOH . S 9 HOH L 1 301 301 HOH HOH . S 9 HOH L 2 302 302 HOH HOH . S 9 HOH L 3 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 8 -25.38 20.762 -63.054 1 83.29 ? C1 GOL 410 D 1 HETATM 2 O O1 GOL . . . L 8 -26.654 21.142 -63.536 1 83.23 ? O1 GOL 410 D 1 HETATM 3 C C2 GOL . . . L 8 -25.079 21.383 -61.686 1 83.28 ? C2 GOL 410 D 1 HETATM 4 O O2 GOL . . . L 8 -26.264 21.779 -61.017 1 83.18 ? O2 GOL 410 D 1 HETATM 5 C C3 GOL . . . L 8 -24.294 20.388 -60.828 1 83.33 ? C3 GOL 410 D 1 HETATM 6 O O3 GOL . . . L 8 -22.91 20.425 -61.131 1 83.37 ? O3 GOL 410 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #