data_4JZV # _model_server_result.job_id 6wPvsZcr0OujFvlp3Q781g _model_server_result.datetime_utc '2024-12-21 14:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 4JZV # _exptl.entry_id 4JZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JZV _cell.length_a 62.158 _cell.length_b 138.025 _cell.length_c 35.684 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H,J 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' GCP 1 C GCP 1 1_555 C P G 2 C G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? metalc ? metalc1 A O GLY 52 A GLY 52 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A OE2 GLU 68 A GLU 68 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A OE2 GLU 72 A GLU 72 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A OE2 GLU 72 A GLU 72 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 A OE1 GLU 115 A GLU 115 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 D MG MG . A MG 201 1_555 H O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc7 D MG MG . A MG 201 1_555 H O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 D MG MG . A MG 201 1_555 C O3G GCP 1 C GCP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc9 D MG MG . A MG 201 1_555 C O2B GCP 1 C GCP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc10 E MG MG . A MG 202 1_555 H O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 E MG MG . A MG 202 1_555 C O3G GCP 1 C GCP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc12 B OE2 GLU 68 B GLU 68 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc13 B OE2 GLU 72 B GLU 72 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc14 B OE2 GLU 115 B GLU 115 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 G MG MG . B MG 201 1_555 I O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc16 G MG MG . B MG 201 1_555 I O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4JZV _atom_sites.fract_transf_matrix[1][1] 0.016088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 201 -1 MG MG . E 3 MG A 1 202 202 MG MG . F 4 EPE A 1 203 205 EPE EPE . G 3 MG B 1 201 201 MG MG . H 5 HOH A 1 301 301 HOH HOH . H 5 HOH A 2 302 302 HOH HOH . H 5 HOH A 3 303 303 HOH HOH . H 5 HOH A 4 304 304 HOH HOH . H 5 HOH A 5 305 305 HOH HOH . H 5 HOH A 6 306 306 HOH HOH . H 5 HOH A 7 307 307 HOH HOH . H 5 HOH A 8 308 308 HOH HOH . H 5 HOH A 9 309 309 HOH HOH . H 5 HOH A 10 310 310 HOH HOH . H 5 HOH A 11 311 311 HOH HOH . H 5 HOH A 12 312 312 HOH HOH . H 5 HOH A 13 313 313 HOH HOH . H 5 HOH A 14 314 314 HOH HOH . H 5 HOH A 15 315 315 HOH HOH . H 5 HOH A 16 316 316 HOH HOH . H 5 HOH A 17 317 317 HOH HOH . H 5 HOH A 18 318 318 HOH HOH . H 5 HOH A 19 319 319 HOH HOH . H 5 HOH A 20 320 320 HOH HOH . H 5 HOH A 21 321 321 HOH HOH . H 5 HOH A 22 322 322 HOH HOH . H 5 HOH A 23 323 323 HOH HOH . H 5 HOH A 24 324 325 HOH HOH . H 5 HOH A 25 325 326 HOH HOH . H 5 HOH A 26 326 327 HOH HOH . H 5 HOH A 27 327 328 HOH HOH . H 5 HOH A 28 328 329 HOH HOH . H 5 HOH A 29 329 330 HOH HOH . H 5 HOH A 30 330 331 HOH HOH . H 5 HOH A 31 331 332 HOH HOH . H 5 HOH A 32 332 333 HOH HOH . I 5 HOH B 1 301 301 HOH HOH . I 5 HOH B 2 302 302 HOH HOH . I 5 HOH B 3 303 303 HOH HOH . I 5 HOH B 4 304 304 HOH HOH . I 5 HOH B 5 305 305 HOH HOH . I 5 HOH B 6 306 306 HOH HOH . I 5 HOH B 7 307 307 HOH HOH . I 5 HOH B 8 308 308 HOH HOH . I 5 HOH B 9 309 309 HOH HOH . I 5 HOH B 10 310 310 HOH HOH . I 5 HOH B 11 311 311 HOH HOH . I 5 HOH B 12 312 312 HOH HOH . I 5 HOH B 13 313 313 HOH HOH . I 5 HOH B 14 314 314 HOH HOH . I 5 HOH B 15 315 315 HOH HOH . I 5 HOH B 16 316 316 HOH HOH . I 5 HOH B 17 317 317 HOH HOH . I 5 HOH B 18 318 318 HOH HOH . I 5 HOH B 19 319 319 HOH HOH . I 5 HOH B 20 320 320 HOH HOH . I 5 HOH B 21 321 321 HOH HOH . I 5 HOH B 22 322 322 HOH HOH . I 5 HOH B 23 323 323 HOH HOH . I 5 HOH B 24 324 324 HOH HOH . I 5 HOH B 25 325 325 HOH HOH . I 5 HOH B 26 326 326 HOH HOH . I 5 HOH B 27 327 327 HOH HOH . I 5 HOH B 28 328 328 HOH HOH . I 5 HOH B 29 329 329 HOH HOH . I 5 HOH B 30 330 330 HOH HOH . I 5 HOH B 31 331 331 HOH HOH . I 5 HOH B 32 332 332 HOH HOH . I 5 HOH B 33 333 333 HOH HOH . I 5 HOH B 34 334 334 HOH HOH . I 5 HOH B 35 335 335 HOH HOH . I 5 HOH B 36 336 336 HOH HOH . I 5 HOH B 37 337 337 HOH HOH . J 5 HOH C 1 101 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 4 -18.939 34.895 -11.542 1 72.97 ? N1 EPE 203 A 1 HETATM 2 C C2 EPE . . . F 4 -19.064 34.235 -12.86 1 72.88 ? C2 EPE 203 A 1 HETATM 3 C C3 EPE . . . F 4 -17.684 34.154 -13.519 1 72.63 ? C3 EPE 203 A 1 HETATM 4 N N4 EPE . . . F 4 -16.933 35.407 -13.437 1 72.39 ? N4 EPE 203 A 1 HETATM 5 C C5 EPE . . . F 4 -17.103 36.332 -12.316 1 72.46 ? C5 EPE 203 A 1 HETATM 6 C C6 EPE . . . F 4 -18.497 36.296 -11.683 1 72.61 ? C6 EPE 203 A 1 HETATM 7 C C7 EPE . . . F 4 -16.091 35.8 -14.557 1 72.03 ? C7 EPE 203 A 1 HETATM 8 C C8 EPE . . . F 4 -14.628 35.381 -14.408 1 71.64 ? C8 EPE 203 A 1 HETATM 9 O O8 EPE . . . F 4 -14.126 34.966 -15.658 1 71.33 ? O8 EPE 203 A 1 HETATM 10 C C9 EPE . . . F 4 -20.213 34.848 -10.809 1 73.69 ? C9 EPE 203 A 1 HETATM 11 C C10 EPE . . . F 4 -20.06 33.917 -9.611 1 74.62 ? C10 EPE 203 A 1 HETATM 12 S S EPE . . . F 4 -20.892 34.437 -8.088 1 75.53 ? S EPE 203 A 1 HETATM 13 O O1S EPE . . . F 4 -21.282 35.842 -8.151 1 75.54 ? O1S EPE 203 A 1 HETATM 14 O O2S EPE . . . F 4 -22.077 33.607 -7.884 1 75.65 ? O2S EPE 203 A 1 HETATM 15 O O3S EPE . . . F 4 -19.977 34.254 -6.965 1 76 ? O3S EPE 203 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #