data_4K19 # _model_server_result.job_id Oz8pvHH-7ewExm-wmQyXTg _model_server_result.datetime_utc '2024-10-18 04:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":205}' # _entry.id 4K19 # _exptl.entry_id 4K19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K19 _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,S 1 1 B,J,K,T 2 1 C,L,M,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 D FE FE . A FE 201 1_555 I O42 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc2 L FE FE . C FE 201 1_555 R O42 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.728 ? metalc ? metalc3 L FE FE . C FE 201 1_555 R O44 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 L FE FE . C FE 201 1_555 R O28 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 J FE FE . B FE 201 1_555 K O28 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc6 J FE FE . B FE 201 1_555 K O27 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 D FE FE . A FE 201 1_555 I O44 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 J FE FE . B FE 201 1_555 K O42 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 L FE FE . C FE 201 1_555 R O27 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 D FE FE . A FE 201 1_555 I O28 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 L FE FE . C FE 201 1_555 R O45 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc12 D FE FE . A FE 201 1_555 I O45 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 J FE FE . B FE 201 1_555 K O41 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 J FE FE . B FE 201 1_555 K O44 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 D FE FE . A FE 201 1_555 I O27 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc16 J FE FE . B FE 201 1_555 K O45 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc17 L FE FE . C FE 201 1_555 R O41 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4K19 _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 201 201 FE FE . E 3 GOL A 1 202 202 GOL GOL . F 4 SO4 A 1 203 203 SO4 SO4 . G 5 CL A 1 204 204 CL CL . H 3 GOL A 1 205 205 GOL GOL . I 6 1OD A 1 206 206 1OD 1OD . J 2 FE B 1 201 201 FE FE . K 6 1OD B 1 202 202 1OD 1OD . L 2 FE C 1 201 201 FE FE . M 4 SO4 C 1 202 202 SO4 SO4 . N 5 CL C 1 203 203 CL CL . O 7 NA C 1 204 204 NA NA . P 7 NA C 1 205 205 NA NA . Q 3 GOL C 1 206 206 GOL GOL . R 6 1OD C 1 207 207 1OD 1OD . S 8 HOH A 1 301 301 HOH HOH . S 8 HOH A 2 302 302 HOH HOH . S 8 HOH A 3 303 303 HOH HOH . S 8 HOH A 4 304 304 HOH HOH . S 8 HOH A 5 305 305 HOH HOH . S 8 HOH A 6 306 306 HOH HOH . S 8 HOH A 7 307 307 HOH HOH . S 8 HOH A 8 308 308 HOH HOH . S 8 HOH A 9 309 309 HOH HOH . S 8 HOH A 10 310 310 HOH HOH . S 8 HOH A 11 311 311 HOH HOH . S 8 HOH A 12 312 312 HOH HOH . S 8 HOH A 13 313 313 HOH HOH . S 8 HOH A 14 314 314 HOH HOH . S 8 HOH A 15 315 315 HOH HOH . S 8 HOH A 16 316 316 HOH HOH . S 8 HOH A 17 317 317 HOH HOH . S 8 HOH A 18 318 318 HOH HOH . S 8 HOH A 19 319 319 HOH HOH . T 8 HOH B 1 301 301 HOH HOH . T 8 HOH B 2 302 302 HOH HOH . T 8 HOH B 3 303 303 HOH HOH . T 8 HOH B 4 304 304 HOH HOH . T 8 HOH B 5 305 305 HOH HOH . U 8 HOH C 1 301 301 HOH HOH . U 8 HOH C 2 302 302 HOH HOH . U 8 HOH C 3 303 303 HOH HOH . U 8 HOH C 4 304 304 HOH HOH . U 8 HOH C 5 305 305 HOH HOH . U 8 HOH C 6 306 306 HOH HOH . U 8 HOH C 7 307 307 HOH HOH . U 8 HOH C 8 308 308 HOH HOH . U 8 HOH C 9 309 309 HOH HOH . U 8 HOH C 10 310 310 HOH HOH . U 8 HOH C 11 311 311 HOH HOH . U 8 HOH C 12 312 312 HOH HOH . U 8 HOH C 13 313 313 HOH HOH . U 8 HOH C 14 314 314 HOH HOH . U 8 HOH C 15 315 315 HOH HOH . U 8 HOH C 16 316 316 HOH HOH . U 8 HOH C 17 317 317 HOH HOH . U 8 HOH C 18 318 318 HOH HOH . U 8 HOH C 19 319 319 HOH HOH . U 8 HOH C 20 320 320 HOH HOH . U 8 HOH C 21 321 321 HOH HOH . U 8 HOH C 22 322 322 HOH HOH . U 8 HOH C 23 323 323 HOH HOH . U 8 HOH C 24 324 324 HOH HOH . U 8 HOH C 25 325 325 HOH HOH . U 8 HOH C 26 326 326 HOH HOH . U 8 HOH C 27 327 327 HOH HOH . U 8 HOH C 28 328 328 HOH HOH . U 8 HOH C 29 329 329 HOH HOH . U 8 HOH C 30 330 330 HOH HOH . U 8 HOH C 31 331 331 HOH HOH . U 8 HOH C 32 332 332 HOH HOH . U 8 HOH C 33 333 333 HOH HOH . U 8 HOH C 34 334 334 HOH HOH . U 8 HOH C 35 335 335 HOH HOH . U 8 HOH C 36 336 336 HOH HOH . U 8 HOH C 37 337 337 HOH HOH . U 8 HOH C 38 338 338 HOH HOH . U 8 HOH C 39 339 339 HOH HOH . U 8 HOH C 40 340 340 HOH HOH . U 8 HOH C 41 341 341 HOH HOH . U 8 HOH C 42 342 342 HOH HOH . U 8 HOH C 43 343 343 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 7 _atom_site.Cartn_x 47.615 _atom_site.Cartn_y 33.708 _atom_site.Cartn_z 26.352 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #