data_4K19 # _model_server_result.job_id UqcrQNq-vlliXbcJxYYtVA _model_server_result.datetime_utc '2024-10-18 04:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":207}' # _entry.id 4K19 # _exptl.entry_id 4K19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.622 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5R)-N,N-bis{3-[(2,3-dihydroxybenzoyl)amino]propyl}-2-(2,3-dihydroxyphenyl)-5-methyl-4,5-dihydro-1,3-oxazole-4-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K19 _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,S 1 1 B,J,K,T 2 1 C,L,M,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 D FE FE . A FE 201 1_555 I O42 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc2 L FE FE . C FE 201 1_555 R O42 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.728 ? metalc ? metalc3 L FE FE . C FE 201 1_555 R O44 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 L FE FE . C FE 201 1_555 R O28 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 J FE FE . B FE 201 1_555 K O28 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc6 J FE FE . B FE 201 1_555 K O27 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 D FE FE . A FE 201 1_555 I O44 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 J FE FE . B FE 201 1_555 K O42 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 L FE FE . C FE 201 1_555 R O27 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 D FE FE . A FE 201 1_555 I O28 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 L FE FE . C FE 201 1_555 R O45 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc12 D FE FE . A FE 201 1_555 I O45 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 J FE FE . B FE 201 1_555 K O41 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 J FE FE . B FE 201 1_555 K O44 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 D FE FE . A FE 201 1_555 I O27 1OD . A 1OD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc16 J FE FE . B FE 201 1_555 K O45 1OD . B 1OD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc17 L FE FE . C FE 201 1_555 R O41 1OD . C 1OD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'C31 H34 N4 O10' _chem_comp.formula_weight 622.622 _chem_comp.id 1OD _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5R)-N,N-bis{3-[(2,3-dihydroxybenzoyl)amino]propyl}-2-(2,3-dihydroxyphenyl)-5-methyl-4,5-dihydro-1,3-oxazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms fluvibactin # _atom_sites.entry_id 4K19 _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 201 201 FE FE . E 3 GOL A 1 202 202 GOL GOL . F 4 SO4 A 1 203 203 SO4 SO4 . G 5 CL A 1 204 204 CL CL . H 3 GOL A 1 205 205 GOL GOL . I 6 1OD A 1 206 206 1OD 1OD . J 2 FE B 1 201 201 FE FE . K 6 1OD B 1 202 202 1OD 1OD . L 2 FE C 1 201 201 FE FE . M 4 SO4 C 1 202 202 SO4 SO4 . N 5 CL C 1 203 203 CL CL . O 7 NA C 1 204 204 NA NA . P 7 NA C 1 205 205 NA NA . Q 3 GOL C 1 206 206 GOL GOL . R 6 1OD C 1 207 207 1OD 1OD . S 8 HOH A 1 301 301 HOH HOH . S 8 HOH A 2 302 302 HOH HOH . S 8 HOH A 3 303 303 HOH HOH . S 8 HOH A 4 304 304 HOH HOH . S 8 HOH A 5 305 305 HOH HOH . S 8 HOH A 6 306 306 HOH HOH . S 8 HOH A 7 307 307 HOH HOH . S 8 HOH A 8 308 308 HOH HOH . S 8 HOH A 9 309 309 HOH HOH . S 8 HOH A 10 310 310 HOH HOH . S 8 HOH A 11 311 311 HOH HOH . S 8 HOH A 12 312 312 HOH HOH . S 8 HOH A 13 313 313 HOH HOH . S 8 HOH A 14 314 314 HOH HOH . S 8 HOH A 15 315 315 HOH HOH . S 8 HOH A 16 316 316 HOH HOH . S 8 HOH A 17 317 317 HOH HOH . S 8 HOH A 18 318 318 HOH HOH . S 8 HOH A 19 319 319 HOH HOH . T 8 HOH B 1 301 301 HOH HOH . T 8 HOH B 2 302 302 HOH HOH . T 8 HOH B 3 303 303 HOH HOH . T 8 HOH B 4 304 304 HOH HOH . T 8 HOH B 5 305 305 HOH HOH . U 8 HOH C 1 301 301 HOH HOH . U 8 HOH C 2 302 302 HOH HOH . U 8 HOH C 3 303 303 HOH HOH . U 8 HOH C 4 304 304 HOH HOH . U 8 HOH C 5 305 305 HOH HOH . U 8 HOH C 6 306 306 HOH HOH . U 8 HOH C 7 307 307 HOH HOH . U 8 HOH C 8 308 308 HOH HOH . U 8 HOH C 9 309 309 HOH HOH . U 8 HOH C 10 310 310 HOH HOH . U 8 HOH C 11 311 311 HOH HOH . U 8 HOH C 12 312 312 HOH HOH . U 8 HOH C 13 313 313 HOH HOH . U 8 HOH C 14 314 314 HOH HOH . U 8 HOH C 15 315 315 HOH HOH . U 8 HOH C 16 316 316 HOH HOH . U 8 HOH C 17 317 317 HOH HOH . U 8 HOH C 18 318 318 HOH HOH . U 8 HOH C 19 319 319 HOH HOH . U 8 HOH C 20 320 320 HOH HOH . U 8 HOH C 21 321 321 HOH HOH . U 8 HOH C 22 322 322 HOH HOH . U 8 HOH C 23 323 323 HOH HOH . U 8 HOH C 24 324 324 HOH HOH . U 8 HOH C 25 325 325 HOH HOH . U 8 HOH C 26 326 326 HOH HOH . U 8 HOH C 27 327 327 HOH HOH . U 8 HOH C 28 328 328 HOH HOH . U 8 HOH C 29 329 329 HOH HOH . U 8 HOH C 30 330 330 HOH HOH . U 8 HOH C 31 331 331 HOH HOH . U 8 HOH C 32 332 332 HOH HOH . U 8 HOH C 33 333 333 HOH HOH . U 8 HOH C 34 334 334 HOH HOH . U 8 HOH C 35 335 335 HOH HOH . U 8 HOH C 36 336 336 HOH HOH . U 8 HOH C 37 337 337 HOH HOH . U 8 HOH C 38 338 338 HOH HOH . U 8 HOH C 39 339 339 HOH HOH . U 8 HOH C 40 340 340 HOH HOH . U 8 HOH C 41 341 341 HOH HOH . U 8 HOH C 42 342 342 HOH HOH . U 8 HOH C 43 343 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O34 1OD . . . R 6 52.845 39.509 40.771 1 43.76 ? O34 1OD 207 C 1 HETATM 2 C C33 1OD . . . R 6 52.034 39.047 41.558 1 41.5 ? C33 1OD 207 C 1 HETATM 3 C C35 1OD . . . R 6 51.757 39.819 42.815 1 31.05 ? C35 1OD 207 C 1 HETATM 4 C C40 1OD . . . R 6 52.717 40.661 43.366 1 27.57 ? C40 1OD 207 C 1 HETATM 5 C C39 1OD . . . R 6 52.455 41.327 44.563 1 25.35 ? C39 1OD 207 C 1 HETATM 6 C C38 1OD . . . R 6 51.239 41.154 45.215 1 23.52 ? C38 1OD 207 C 1 HETATM 7 C C37 1OD . . . R 6 50.294 40.301 44.654 1 26.52 ? C37 1OD 207 C 1 HETATM 8 O O41 1OD . . . R 6 49.082 40.081 45.23 1 29 ? O41 1OD 207 C 1 HETATM 9 C C36 1OD . . . R 6 50.557 39.646 43.474 1 25.73 ? C36 1OD 207 C 1 HETATM 10 O O42 1OD . . . R 6 49.596 38.835 42.981 1 22.85 ? O42 1OD 207 C 1 HETATM 11 N N32 1OD . . . R 6 51.411 37.858 41.417 1 50.44 ? N32 1OD 207 C 1 HETATM 12 C C31 1OD . . . R 6 51.429 36.807 40.392 1 50.95 ? C31 1OD 207 C 1 HETATM 13 C C30 1OD . . . R 6 50.004 36.256 40.156 1 51.46 ? C30 1OD 207 C 1 HETATM 14 C C29 1OD . . . R 6 49.37 35.452 41.306 1 50.67 ? C29 1OD 207 C 1 HETATM 15 N N14 1OD . . . R 6 49.123 34.039 40.942 1 50.48 ? N14 1OD 207 C 1 HETATM 16 C C12 1OD . . . R 6 47.973 33.416 40.58 1 45.6 ? C12 1OD 207 C 1 HETATM 17 O O13 1OD . . . R 6 47.96 32.217 40.354 1 46.54 ? O13 1OD 207 C 1 HETATM 18 C C10 1OD . . . R 6 46.617 34.058 40.453 1 41.84 ? C10 1OD 207 C 1 HETATM 19 C C9 1OD . . . R 6 46.125 34.106 38.999 1 40.33 ? C9 1OD 207 C 1 HETATM 20 C C43 1OD . . . R 6 44.874 33.262 38.798 1 38.93 ? C43 1OD 207 C 1 HETATM 21 O O8 1OD . . . R 6 45.812 35.464 38.687 1 37.68 ? O8 1OD 207 C 1 HETATM 22 N N11 1OD . . . R 6 46.534 35.452 40.836 1 40.18 ? N11 1OD 207 C 1 HETATM 23 C C7 1OD . . . R 6 46.087 36.177 39.916 1 36.18 ? C7 1OD 207 C 1 HETATM 24 C C1 1OD . . . R 6 45.881 37.644 40.126 1 31.78 ? C1 1OD 207 C 1 HETATM 25 C C6 1OD . . . R 6 46.519 38.249 41.201 1 28.22 ? C6 1OD 207 C 1 HETATM 26 O O44 1OD . . . R 6 47.335 37.572 42.057 1 27.45 ? O44 1OD 207 C 1 HETATM 27 C C5 1OD . . . R 6 46.343 39.582 41.447 1 23.19 ? C5 1OD 207 C 1 HETATM 28 O O45 1OD . . . R 6 47.019 40.094 42.509 1 22.37 ? O45 1OD 207 C 1 HETATM 29 C C4 1OD . . . R 6 45.529 40.343 40.613 1 24.11 ? C4 1OD 207 C 1 HETATM 30 C C3 1OD . . . R 6 44.881 39.743 39.536 1 25.33 ? C3 1OD 207 C 1 HETATM 31 C C2 1OD . . . R 6 45.052 38.384 39.29 1 27.45 ? C2 1OD 207 C 1 HETATM 32 C C15 1OD . . . R 6 50.326 33.217 41.067 1 49.23 ? C15 1OD 207 C 1 HETATM 33 C C16 1OD . . . R 6 50.129 32.342 42.312 1 47.54 ? C16 1OD 207 C 1 HETATM 34 C C17 1OD . . . R 6 50.658 32.999 43.585 1 46.58 ? C17 1OD 207 C 1 HETATM 35 N N18 1OD . . . R 6 49.598 33.844 44.13 1 45.78 ? N18 1OD 207 C 1 HETATM 36 C C19 1OD . . . R 6 49.327 34.04 45.423 1 44.3 ? C19 1OD 207 C 1 HETATM 37 O O20 1OD . . . R 6 49.959 33.471 46.301 1 46.26 ? O20 1OD 207 C 1 HETATM 38 C C21 1OD . . . R 6 48.212 34.954 45.843 1 40.87 ? C21 1OD 207 C 1 HETATM 39 C C26 1OD . . . R 6 47.965 36.158 45.193 1 39.53 ? C26 1OD 207 C 1 HETATM 40 O O27 1OD . . . R 6 48.731 36.545 44.14 1 37.14 ? O27 1OD 207 C 1 HETATM 41 C C25 1OD . . . R 6 46.93 36.98 45.617 1 39.01 ? C25 1OD 207 C 1 HETATM 42 O O28 1OD . . . R 6 46.676 38.154 44.975 1 40.03 ? O28 1OD 207 C 1 HETATM 43 C C24 1OD . . . R 6 46.143 36.602 46.698 1 38.74 ? C24 1OD 207 C 1 HETATM 44 C C23 1OD . . . R 6 46.397 35.405 47.358 1 38.23 ? C23 1OD 207 C 1 HETATM 45 C C22 1OD . . . R 6 47.436 34.587 46.935 1 38.67 ? C22 1OD 207 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #