data_4K25 # _model_server_result.job_id OsqF-knqnZHRe2VejjvxGA _model_server_result.datetime_utc '2025-02-26 07:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4K25 # _exptl.entry_id 4K25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K25 _cell.length_a 64.597 _cell.length_b 130.983 _cell.length_c 47.866 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 129.194 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 93 A GLY 117 1_555 A N MSE 94 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C MSE 94 A MSE 118 1_555 A N PRO 95 A PRO 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale3 A C HIS 121 A HIS 145 1_555 A N MSE 122 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C MSE 122 A MSE 146 1_555 A N LEU 123 A LEU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale5 A C ARG 130 A ARG 154 1_555 A N MSE 131 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale6 A C MSE 131 A MSE 155 1_555 A N GLY 132 A GLY 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C THR 190 A THR 214 1_555 A N MSE 191 A MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale8 A C MSE 191 A MSE 215 1_555 A N ILE 192 A ILE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale9 A C GLU 195 A GLU 219 1_555 A N MSE 196 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale10 A C MSE 196 A MSE 220 1_555 A N GLU 197 A GLU 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale11 A C GLU 214 A GLU 238 1_555 A N MSE 215 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale12 A C ASN 227 A ASN 251 1_555 A N MSE 228 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale13 A C MSE 228 A MSE 252 1_555 A N LEU 229 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale14 A C PRO 331 A PRO 355 1_555 A N MSE 332 A MSE 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale15 A C MSE 332 A MSE 356 1_555 A N ASP 333 A ASP 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale16 A C ILE 340 A ILE 364 1_555 A N MSE 341 A MSE 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 A C MSE 341 A MSE 365 1_555 A N ILE 342 A ILE 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? metalc ? metalc1 A NE2 HIS 121 A HIS 145 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A OD1 ASP 337 A ASP 361 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 A OD2 ASP 337 A ASP 361 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4K25 _atom_sites.fract_transf_matrix[1][1] 0.015481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 601 ZN ZN . C 3 CA A 1 602 602 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 51.03 _atom_site.Cartn_y -12.263 _atom_site.Cartn_z 30.737 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 120.25 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #