data_4K2D # _model_server_result.job_id KNevTe_k6Ju4PKBVCwUSig _model_server_result.datetime_utc '2024-12-26 10:06:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4K2D # _exptl.entry_id 4K2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K2D _cell.length_a 59.32 _cell.length_b 62.3 _cell.length_c 68.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 43 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 49 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 46 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.053 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4K2D _atom_sites.fract_transf_matrix[1][1] 0.016858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 1 GOL GOL . D 2 GOL A 1 203 1 GOL GOL . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 3 HOH HOH . E 3 HOH A 4 304 4 HOH HOH . E 3 HOH A 5 305 5 HOH HOH . E 3 HOH A 6 306 6 HOH HOH . E 3 HOH A 7 307 7 HOH HOH . E 3 HOH A 8 308 8 HOH HOH . E 3 HOH A 9 309 9 HOH HOH . E 3 HOH A 10 310 10 HOH HOH . E 3 HOH A 11 311 11 HOH HOH . E 3 HOH A 12 312 12 HOH HOH . E 3 HOH A 13 313 13 HOH HOH . E 3 HOH A 14 314 14 HOH HOH . E 3 HOH A 15 315 15 HOH HOH . E 3 HOH A 16 316 16 HOH HOH . E 3 HOH A 17 317 17 HOH HOH . E 3 HOH A 18 318 18 HOH HOH . E 3 HOH A 19 319 19 HOH HOH . E 3 HOH A 20 320 20 HOH HOH . E 3 HOH A 21 321 21 HOH HOH . E 3 HOH A 22 322 22 HOH HOH . E 3 HOH A 23 323 23 HOH HOH . E 3 HOH A 24 324 24 HOH HOH . E 3 HOH A 25 325 25 HOH HOH . E 3 HOH A 26 326 26 HOH HOH . E 3 HOH A 27 327 27 HOH HOH . E 3 HOH A 28 328 28 HOH HOH . E 3 HOH A 29 329 29 HOH HOH . E 3 HOH A 30 330 30 HOH HOH . E 3 HOH A 31 331 31 HOH HOH . E 3 HOH A 32 332 32 HOH HOH . E 3 HOH A 33 333 33 HOH HOH . E 3 HOH A 34 334 34 HOH HOH . E 3 HOH A 35 335 35 HOH HOH . E 3 HOH A 36 336 36 HOH HOH . E 3 HOH A 37 337 37 HOH HOH . E 3 HOH A 38 338 38 HOH HOH . E 3 HOH A 39 339 39 HOH HOH . E 3 HOH A 40 340 40 HOH HOH . E 3 HOH A 41 341 41 HOH HOH . E 3 HOH A 42 342 42 HOH HOH . E 3 HOH A 43 343 43 HOH HOH . E 3 HOH A 44 344 44 HOH HOH . E 3 HOH A 45 345 45 HOH HOH . E 3 HOH A 46 346 46 HOH HOH . E 3 HOH A 47 347 47 HOH HOH . E 3 HOH A 48 348 48 HOH HOH . E 3 HOH A 49 349 49 HOH HOH . E 3 HOH A 50 350 50 HOH HOH . E 3 HOH A 51 351 51 HOH HOH . E 3 HOH A 52 352 52 HOH HOH . E 3 HOH A 53 353 53 HOH HOH . E 3 HOH A 54 354 54 HOH HOH . E 3 HOH A 55 355 55 HOH HOH . E 3 HOH A 56 356 56 HOH HOH . E 3 HOH A 57 357 57 HOH HOH . E 3 HOH A 58 358 58 HOH HOH . E 3 HOH A 59 359 59 HOH HOH . E 3 HOH A 60 360 60 HOH HOH . E 3 HOH A 61 361 61 HOH HOH . E 3 HOH A 62 362 62 HOH HOH . E 3 HOH A 63 363 63 HOH HOH . E 3 HOH A 64 364 64 HOH HOH . E 3 HOH A 65 365 65 HOH HOH . E 3 HOH A 66 366 66 HOH HOH . E 3 HOH A 67 367 67 HOH HOH . E 3 HOH A 68 368 68 HOH HOH . E 3 HOH A 69 369 69 HOH HOH . E 3 HOH A 70 370 70 HOH HOH . E 3 HOH A 71 371 71 HOH HOH . E 3 HOH A 72 372 72 HOH HOH . E 3 HOH A 73 373 73 HOH HOH . E 3 HOH A 74 374 74 HOH HOH . E 3 HOH A 75 375 75 HOH HOH . E 3 HOH A 76 376 76 HOH HOH . E 3 HOH A 77 377 77 HOH HOH . E 3 HOH A 78 378 78 HOH HOH . E 3 HOH A 79 379 79 HOH HOH . E 3 HOH A 80 380 80 HOH HOH . E 3 HOH A 81 381 82 HOH HOH . E 3 HOH A 82 382 83 HOH HOH . E 3 HOH A 83 383 84 HOH HOH . E 3 HOH A 84 384 85 HOH HOH . E 3 HOH A 85 385 86 HOH HOH . E 3 HOH A 86 386 87 HOH HOH . E 3 HOH A 87 387 88 HOH HOH . E 3 HOH A 88 388 89 HOH HOH . E 3 HOH A 89 389 90 HOH HOH . E 3 HOH A 90 390 91 HOH HOH . E 3 HOH A 91 391 92 HOH HOH . E 3 HOH A 92 392 93 HOH HOH . E 3 HOH A 93 393 94 HOH HOH . E 3 HOH A 94 394 95 HOH HOH . E 3 HOH A 95 395 96 HOH HOH . E 3 HOH A 96 396 97 HOH HOH . E 3 HOH A 97 397 98 HOH HOH . E 3 HOH A 98 398 99 HOH HOH . E 3 HOH A 99 399 100 HOH HOH . E 3 HOH A 100 400 101 HOH HOH . E 3 HOH A 101 401 102 HOH HOH . E 3 HOH A 102 402 103 HOH HOH . E 3 HOH A 103 403 104 HOH HOH . E 3 HOH A 104 404 106 HOH HOH . E 3 HOH A 105 405 107 HOH HOH . E 3 HOH A 106 406 108 HOH HOH . E 3 HOH A 107 407 110 HOH HOH . E 3 HOH A 108 408 112 HOH HOH . E 3 HOH A 109 409 113 HOH HOH . E 3 HOH A 110 410 114 HOH HOH . E 3 HOH A 111 411 115 HOH HOH . E 3 HOH A 112 412 117 HOH HOH . E 3 HOH A 113 413 118 HOH HOH . E 3 HOH A 114 414 119 HOH HOH . E 3 HOH A 115 415 120 HOH HOH . E 3 HOH A 116 416 121 HOH HOH . E 3 HOH A 117 417 122 HOH HOH . E 3 HOH A 118 418 123 HOH HOH . E 3 HOH A 119 419 124 HOH HOH . E 3 HOH A 120 420 125 HOH HOH . E 3 HOH A 121 421 126 HOH HOH . E 3 HOH A 122 422 127 HOH HOH . E 3 HOH A 123 423 128 HOH HOH . E 3 HOH A 124 424 129 HOH HOH . E 3 HOH A 125 425 131 HOH HOH . E 3 HOH A 126 426 132 HOH HOH . E 3 HOH A 127 427 133 HOH HOH . E 3 HOH A 128 428 135 HOH HOH . E 3 HOH A 129 429 136 HOH HOH . E 3 HOH A 130 430 138 HOH HOH . E 3 HOH A 131 431 139 HOH HOH . E 3 HOH A 132 432 140 HOH HOH . E 3 HOH A 133 433 141 HOH HOH . E 3 HOH A 134 434 142 HOH HOH . E 3 HOH A 135 435 143 HOH HOH . E 3 HOH A 136 436 144 HOH HOH . E 3 HOH A 137 437 147 HOH HOH . E 3 HOH A 138 438 148 HOH HOH . E 3 HOH A 139 439 149 HOH HOH . E 3 HOH A 140 440 150 HOH HOH . E 3 HOH A 141 441 153 HOH HOH . E 3 HOH A 142 442 154 HOH HOH . E 3 HOH A 143 443 155 HOH HOH . E 3 HOH A 144 444 157 HOH HOH . E 3 HOH A 145 445 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -4.25 -31.947 -13.95 1 57.67 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 2 -4.585 -30.647 -14.271 1 51.88 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 2 -5.144 -32.508 -12.89 1 70 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 2 -6.463 -32.31 -13.275 1 80.18 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 2 -4.83 -33.974 -12.724 1 71.56 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 2 -5.338 -34.511 -11.55 1 69.98 ? O3 GOL 203 A 1 HETATM 7 H H11 GOL . . . D 2 -3.33 -31.972 -13.638 1 69.21 ? H11 GOL 203 A 1 HETATM 8 H H12 GOL . . . D 2 -4.328 -32.495 -14.75 1 69.21 ? H12 GOL 203 A 1 HETATM 9 H HO1 GOL . . . D 2 -4.055 -30.356 -14.918 1 62.26 ? HO1 GOL 203 A 1 HETATM 10 H H2 GOL . . . D 2 -4.977 -32.044 -12.052 1 84 ? H2 GOL 203 A 1 HETATM 11 H HO2 GOL . . . D 2 -6.513 -32.29 -14.16 1 96.22 ? HO2 GOL 203 A 1 HETATM 12 H H31 GOL . . . D 2 -3.864 -34.082 -12.712 1 85.87 ? H31 GOL 203 A 1 HETATM 13 H H32 GOL . . . D 2 -5.19 -34.464 -13.484 1 85.87 ? H32 GOL 203 A 1 HETATM 14 H HO3 GOL . . . D 2 -5.103 -35.362 -11.489 1 83.98 ? HO3 GOL 203 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #