data_4K2Y # _model_server_result.job_id 1YRVGLap7R26uRsNHLlE5A _model_server_result.datetime_utc '2024-11-27 00:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4K2Y # _exptl.entry_id 4K2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K2Y _cell.length_a 74.405 _cell.length_b 74.405 _cell.length_c 49.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 188 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 59 A ASN 72 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? metalc ? metalc1 A NE2 HIS 10 A HIS 25 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OE1 GLU 64 A GLU 78 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 255 n n C1 O1 NAG sing 256 n n C1 O5 NAG sing 257 n n C1 H1 NAG sing 258 n n C2 C3 NAG sing 259 n n C2 N2 NAG sing 260 n n C2 H2 NAG sing 261 n n C3 C4 NAG sing 262 n n C3 O3 NAG sing 263 n n C3 H3 NAG sing 264 n n C4 C5 NAG sing 265 n n C4 O4 NAG sing 266 n n C4 H4 NAG sing 267 n n C5 C6 NAG sing 268 n n C5 O5 NAG sing 269 n n C5 H5 NAG sing 270 n n C6 O6 NAG sing 271 n n C6 H61 NAG sing 272 n n C6 H62 NAG sing 273 n n C7 C8 NAG sing 274 n n C7 N2 NAG sing 275 n n C7 O7 NAG doub 276 n n C8 H81 NAG sing 277 n n C8 H82 NAG sing 278 n n C8 H83 NAG sing 279 n n N2 HN2 NAG sing 280 n n O1 HO1 NAG sing 281 n n O3 HO3 NAG sing 282 n n O4 HO4 NAG sing 283 n n O6 HO6 NAG sing 284 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4K2Y _atom_sites.fract_transf_matrix[1][1] 0.01344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 700 ZN ZN2 . C 3 NAG A 1 302 801 NAG NAG . D 4 ES2 A 1 303 990 ES2 LIG . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 48 HOH HOH . E 5 HOH A 49 449 49 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 51 HOH HOH . E 5 HOH A 52 452 52 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 54 HOH HOH . E 5 HOH A 55 455 55 HOH HOH . E 5 HOH A 56 456 56 HOH HOH . E 5 HOH A 57 457 57 HOH HOH . E 5 HOH A 58 458 58 HOH HOH . E 5 HOH A 59 459 59 HOH HOH . E 5 HOH A 60 460 60 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 62 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 65 HOH HOH . E 5 HOH A 66 466 66 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 68 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 70 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 72 HOH HOH . E 5 HOH A 73 473 73 HOH HOH . E 5 HOH A 74 474 74 HOH HOH . E 5 HOH A 75 475 75 HOH HOH . E 5 HOH A 76 476 76 HOH HOH . E 5 HOH A 77 477 77 HOH HOH . E 5 HOH A 78 478 78 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 81 HOH HOH . E 5 HOH A 82 482 82 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 84 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . E 5 HOH A 86 486 86 HOH HOH . E 5 HOH A 87 487 87 HOH HOH . E 5 HOH A 88 488 88 HOH HOH . E 5 HOH A 89 489 89 HOH HOH . E 5 HOH A 90 490 90 HOH HOH . E 5 HOH A 91 491 91 HOH HOH . E 5 HOH A 92 492 92 HOH HOH . E 5 HOH A 93 493 93 HOH HOH . E 5 HOH A 94 494 94 HOH HOH . E 5 HOH A 95 495 95 HOH HOH . E 5 HOH A 96 496 96 HOH HOH . E 5 HOH A 97 497 97 HOH HOH . E 5 HOH A 98 498 98 HOH HOH . E 5 HOH A 99 499 99 HOH HOH . E 5 HOH A 100 500 100 HOH HOH . E 5 HOH A 101 501 101 HOH HOH . E 5 HOH A 102 502 102 HOH HOH . E 5 HOH A 103 503 103 HOH HOH . E 5 HOH A 104 504 104 HOH HOH . E 5 HOH A 105 505 105 HOH HOH . E 5 HOH A 106 506 106 HOH HOH . E 5 HOH A 107 507 107 HOH HOH . E 5 HOH A 108 508 108 HOH HOH . E 5 HOH A 109 509 109 HOH HOH . E 5 HOH A 110 510 110 HOH HOH . E 5 HOH A 111 511 111 HOH HOH . E 5 HOH A 112 512 112 HOH HOH . E 5 HOH A 113 513 113 HOH HOH . E 5 HOH A 114 514 114 HOH HOH . E 5 HOH A 115 515 115 HOH HOH . E 5 HOH A 116 516 116 HOH HOH . E 5 HOH A 117 517 117 HOH HOH . E 5 HOH A 118 518 118 HOH HOH . E 5 HOH A 119 519 119 HOH HOH . E 5 HOH A 120 520 120 HOH HOH . E 5 HOH A 121 521 121 HOH HOH . E 5 HOH A 122 522 122 HOH HOH . E 5 HOH A 123 523 123 HOH HOH . E 5 HOH A 124 524 124 HOH HOH . E 5 HOH A 125 525 125 HOH HOH . E 5 HOH A 126 526 126 HOH HOH . E 5 HOH A 127 527 129 HOH HOH . E 5 HOH A 128 528 130 HOH HOH . E 5 HOH A 129 529 131 HOH HOH . E 5 HOH A 130 530 132 HOH HOH . E 5 HOH A 131 531 133 HOH HOH . E 5 HOH A 132 532 134 HOH HOH . E 5 HOH A 133 533 135 HOH HOH . E 5 HOH A 134 534 136 HOH HOH . E 5 HOH A 135 535 137 HOH HOH . E 5 HOH A 136 536 138 HOH HOH . E 5 HOH A 137 537 139 HOH HOH . E 5 HOH A 138 538 140 HOH HOH . E 5 HOH A 139 539 141 HOH HOH . E 5 HOH A 140 540 142 HOH HOH . E 5 HOH A 141 541 143 HOH HOH . E 5 HOH A 142 542 144 HOH HOH . E 5 HOH A 143 543 145 HOH HOH . E 5 HOH A 144 544 146 HOH HOH . E 5 HOH A 145 545 147 HOH HOH . E 5 HOH A 146 546 148 HOH HOH . E 5 HOH A 147 547 149 HOH HOH . E 5 HOH A 148 548 150 HOH HOH . E 5 HOH A 149 549 151 HOH HOH . E 5 HOH A 150 550 152 HOH HOH . E 5 HOH A 151 551 153 HOH HOH . E 5 HOH A 152 552 154 HOH HOH . E 5 HOH A 153 553 155 HOH HOH . E 5 HOH A 154 554 156 HOH HOH . E 5 HOH A 155 555 157 HOH HOH . E 5 HOH A 156 556 158 HOH HOH . E 5 HOH A 157 557 159 HOH HOH . E 5 HOH A 158 558 160 HOH HOH . E 5 HOH A 159 559 161 HOH HOH . E 5 HOH A 160 560 162 HOH HOH . E 5 HOH A 161 561 163 HOH HOH . E 5 HOH A 162 562 164 HOH HOH . E 5 HOH A 163 563 165 HOH HOH . E 5 HOH A 164 564 166 HOH HOH . E 5 HOH A 165 565 167 HOH HOH . E 5 HOH A 166 566 168 HOH HOH . E 5 HOH A 167 567 169 HOH HOH . E 5 HOH A 168 568 170 HOH HOH . E 5 HOH A 169 569 171 HOH HOH . E 5 HOH A 170 570 172 HOH HOH . E 5 HOH A 171 571 173 HOH HOH . E 5 HOH A 172 572 174 HOH HOH . E 5 HOH A 173 573 175 HOH HOH . E 5 HOH A 174 574 176 HOH HOH . E 5 HOH A 175 575 177 HOH HOH . E 5 HOH A 176 576 178 HOH HOH . E 5 HOH A 177 577 179 HOH HOH . E 5 HOH A 178 578 180 HOH HOH . E 5 HOH A 179 579 181 HOH HOH . E 5 HOH A 180 580 182 HOH HOH . E 5 HOH A 181 581 183 HOH HOH . E 5 HOH A 182 582 184 HOH HOH . E 5 HOH A 183 583 185 HOH HOH . E 5 HOH A 184 584 187 HOH HOH . E 5 HOH A 185 585 188 HOH HOH . E 5 HOH A 186 586 189 HOH HOH . E 5 HOH A 187 587 190 HOH HOH . E 5 HOH A 188 588 191 HOH HOH . E 5 HOH A 189 589 192 HOH HOH . E 5 HOH A 190 590 193 HOH HOH . E 5 HOH A 191 591 194 HOH HOH . E 5 HOH A 192 592 195 HOH HOH . E 5 HOH A 193 593 196 HOH HOH . E 5 HOH A 194 594 197 HOH HOH . E 5 HOH A 195 595 198 HOH HOH . E 5 HOH A 196 596 199 HOH HOH . E 5 HOH A 197 597 200 HOH HOH . E 5 HOH A 198 598 201 HOH HOH . E 5 HOH A 199 599 202 HOH HOH . E 5 HOH A 200 600 203 HOH HOH . E 5 HOH A 201 601 204 HOH HOH . E 5 HOH A 202 602 205 HOH HOH . E 5 HOH A 203 603 206 HOH HOH . E 5 HOH A 204 604 207 HOH HOH . E 5 HOH A 205 605 208 HOH HOH . E 5 HOH A 206 606 209 HOH HOH . E 5 HOH A 207 607 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 80.801 51.565 10.311 1 36.95 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . C 3 81.068 52.744 11.243 1 36.76 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . C 3 82.121 53.657 10.629 1 40.72 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . C 3 83.4 52.848 10.442 1 38.12 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . C 3 83.135 51.622 9.577 1 39.77 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . C 3 84.358 50.713 9.606 1 39.75 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . C 3 79.131 53.169 12.626 1 36.27 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . C 3 78.28 54.265 13.191 1 28.04 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . C 3 79.837 53.452 11.534 1 34.02 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . C 3 82.35 54.777 11.455 1 33.79 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . C 3 84.433 53.622 9.866 1 42.35 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . C 3 81.998 50.872 9.99 1 41.39 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . C 3 83.997 49.444 9.111 1 36.3 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . C 3 79.153 52.065 13.171 1 41.47 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #