data_4K3F # _model_server_result.job_id ljQ5E7g8QYgCUuRqTKNVvA _model_server_result.datetime_utc '2025-01-10 07:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 4K3F # _exptl.entry_id 4K3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K3F _cell.length_a 99.577 _cell.length_b 40.509 _cell.length_c 60.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 166 A ASP 186 1_555 A N MSE 167 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C MSE 167 A MSE 187 1_555 A N ALA 168 A ALA 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ALA 211 A ALA 231 1_555 A N MSE 212 A MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C MSE 212 A MSE 232 1_555 A N GLN 213 A GLN 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4K3F _atom_sites.fract_transf_matrix[1][1] 0.010042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MSE A 1 300 300 MSE MSE . C 3 CL A 1 301 301 CL CL . D 4 SO4 A 1 302 302 SO4 SO4 . E 4 SO4 A 1 303 303 SO4 SO4 . F 5 GOL A 1 304 304 GOL GOL . G 5 GOL A 1 305 305 GOL GOL . H 5 GOL A 1 306 306 GOL GOL . I 5 GOL A 1 307 307 GOL GOL . J 5 GOL A 1 308 308 GOL GOL . K 6 HOH A 1 401 309 HOH HOH . K 6 HOH A 2 402 310 HOH HOH . K 6 HOH A 3 403 311 HOH HOH . K 6 HOH A 4 404 312 HOH HOH . K 6 HOH A 5 405 313 HOH HOH . K 6 HOH A 6 406 314 HOH HOH . K 6 HOH A 7 407 315 HOH HOH . K 6 HOH A 8 408 316 HOH HOH . K 6 HOH A 9 409 317 HOH HOH . K 6 HOH A 10 410 318 HOH HOH . K 6 HOH A 11 411 319 HOH HOH . K 6 HOH A 12 412 320 HOH HOH . K 6 HOH A 13 413 321 HOH HOH . K 6 HOH A 14 414 322 HOH HOH . K 6 HOH A 15 415 323 HOH HOH . K 6 HOH A 16 416 324 HOH HOH . K 6 HOH A 17 417 325 HOH HOH . K 6 HOH A 18 418 326 HOH HOH . K 6 HOH A 19 419 327 HOH HOH . K 6 HOH A 20 420 328 HOH HOH . K 6 HOH A 21 421 329 HOH HOH . K 6 HOH A 22 422 330 HOH HOH . K 6 HOH A 23 423 331 HOH HOH . K 6 HOH A 24 424 332 HOH HOH . K 6 HOH A 25 425 333 HOH HOH . K 6 HOH A 26 426 334 HOH HOH . K 6 HOH A 27 427 335 HOH HOH . K 6 HOH A 28 428 336 HOH HOH . K 6 HOH A 29 429 337 HOH HOH . K 6 HOH A 30 430 338 HOH HOH . K 6 HOH A 31 431 339 HOH HOH . K 6 HOH A 32 432 340 HOH HOH . K 6 HOH A 33 433 341 HOH HOH . K 6 HOH A 34 434 342 HOH HOH . K 6 HOH A 35 435 343 HOH HOH . K 6 HOH A 36 436 344 HOH HOH . K 6 HOH A 37 437 345 HOH HOH . K 6 HOH A 38 438 346 HOH HOH . K 6 HOH A 39 439 347 HOH HOH . K 6 HOH A 40 440 348 HOH HOH . K 6 HOH A 41 441 349 HOH HOH . K 6 HOH A 42 442 350 HOH HOH . K 6 HOH A 43 443 351 HOH HOH . K 6 HOH A 44 444 352 HOH HOH . K 6 HOH A 45 445 353 HOH HOH . K 6 HOH A 46 446 354 HOH HOH . K 6 HOH A 47 447 355 HOH HOH . K 6 HOH A 48 448 356 HOH HOH . K 6 HOH A 49 449 357 HOH HOH . K 6 HOH A 50 450 358 HOH HOH . K 6 HOH A 51 451 359 HOH HOH . K 6 HOH A 52 452 360 HOH HOH . K 6 HOH A 53 453 361 HOH HOH . K 6 HOH A 54 454 362 HOH HOH . K 6 HOH A 55 455 363 HOH HOH . K 6 HOH A 56 456 364 HOH HOH . K 6 HOH A 57 457 365 HOH HOH . K 6 HOH A 58 458 366 HOH HOH . K 6 HOH A 59 459 367 HOH HOH . K 6 HOH A 60 460 368 HOH HOH . K 6 HOH A 61 461 369 HOH HOH . K 6 HOH A 62 462 370 HOH HOH . K 6 HOH A 63 463 371 HOH HOH . K 6 HOH A 64 464 372 HOH HOH . K 6 HOH A 65 465 373 HOH HOH . K 6 HOH A 66 466 374 HOH HOH . K 6 HOH A 67 467 375 HOH HOH . K 6 HOH A 68 468 376 HOH HOH . K 6 HOH A 69 469 377 HOH HOH . K 6 HOH A 70 470 378 HOH HOH . K 6 HOH A 71 471 379 HOH HOH . K 6 HOH A 72 472 380 HOH HOH . K 6 HOH A 73 473 381 HOH HOH . K 6 HOH A 74 474 382 HOH HOH . K 6 HOH A 75 475 383 HOH HOH . K 6 HOH A 76 476 384 HOH HOH . K 6 HOH A 77 477 385 HOH HOH . K 6 HOH A 78 478 386 HOH HOH . K 6 HOH A 79 479 387 HOH HOH . K 6 HOH A 80 480 388 HOH HOH . K 6 HOH A 81 481 389 HOH HOH . K 6 HOH A 82 482 390 HOH HOH . K 6 HOH A 83 483 391 HOH HOH . K 6 HOH A 84 484 392 HOH HOH . K 6 HOH A 85 485 393 HOH HOH . K 6 HOH A 86 486 394 HOH HOH . K 6 HOH A 87 487 395 HOH HOH . K 6 HOH A 88 488 396 HOH HOH . K 6 HOH A 89 489 397 HOH HOH . K 6 HOH A 90 490 398 HOH HOH . K 6 HOH A 91 491 399 HOH HOH . K 6 HOH A 92 492 400 HOH HOH . K 6 HOH A 93 493 401 HOH HOH . K 6 HOH A 94 494 402 HOH HOH . K 6 HOH A 95 495 403 HOH HOH . K 6 HOH A 96 496 404 HOH HOH . K 6 HOH A 97 497 405 HOH HOH . K 6 HOH A 98 498 406 HOH HOH . K 6 HOH A 99 499 407 HOH HOH . K 6 HOH A 100 500 408 HOH HOH . K 6 HOH A 101 501 409 HOH HOH . K 6 HOH A 102 502 410 HOH HOH . K 6 HOH A 103 503 411 HOH HOH . K 6 HOH A 104 504 412 HOH HOH . K 6 HOH A 105 505 413 HOH HOH . K 6 HOH A 106 506 414 HOH HOH . K 6 HOH A 107 507 415 HOH HOH . K 6 HOH A 108 508 416 HOH HOH . K 6 HOH A 109 509 417 HOH HOH . K 6 HOH A 110 510 418 HOH HOH . K 6 HOH A 111 511 419 HOH HOH . K 6 HOH A 112 512 420 HOH HOH . K 6 HOH A 113 513 421 HOH HOH . K 6 HOH A 114 514 422 HOH HOH . K 6 HOH A 115 515 423 HOH HOH . K 6 HOH A 116 516 424 HOH HOH . K 6 HOH A 117 517 425 HOH HOH . K 6 HOH A 118 518 426 HOH HOH . K 6 HOH A 119 519 427 HOH HOH . K 6 HOH A 120 520 428 HOH HOH . K 6 HOH A 121 521 429 HOH HOH . K 6 HOH A 122 522 430 HOH HOH . K 6 HOH A 123 523 431 HOH HOH . K 6 HOH A 124 524 432 HOH HOH . K 6 HOH A 125 525 433 HOH HOH . K 6 HOH A 126 526 434 HOH HOH . K 6 HOH A 127 527 435 HOH HOH . K 6 HOH A 128 528 436 HOH HOH . K 6 HOH A 129 529 437 HOH HOH . K 6 HOH A 130 530 438 HOH HOH . K 6 HOH A 131 531 439 HOH HOH . K 6 HOH A 132 532 440 HOH HOH . K 6 HOH A 133 533 441 HOH HOH . K 6 HOH A 134 534 442 HOH HOH . K 6 HOH A 135 535 443 HOH HOH . K 6 HOH A 136 536 444 HOH HOH . K 6 HOH A 137 537 445 HOH HOH . K 6 HOH A 138 538 446 HOH HOH . K 6 HOH A 139 539 447 HOH HOH . K 6 HOH A 140 540 448 HOH HOH . K 6 HOH A 141 541 449 HOH HOH . K 6 HOH A 142 542 450 HOH HOH . K 6 HOH A 143 543 451 HOH HOH . K 6 HOH A 144 544 452 HOH HOH . K 6 HOH A 145 545 453 HOH HOH . K 6 HOH A 146 546 454 HOH HOH . K 6 HOH A 147 547 455 HOH HOH . K 6 HOH A 148 548 456 HOH HOH . K 6 HOH A 149 549 457 HOH HOH . K 6 HOH A 150 550 458 HOH HOH . K 6 HOH A 151 551 459 HOH HOH . K 6 HOH A 152 552 460 HOH HOH . K 6 HOH A 153 553 461 HOH HOH . K 6 HOH A 154 554 462 HOH HOH . K 6 HOH A 155 555 463 HOH HOH . K 6 HOH A 156 556 464 HOH HOH . K 6 HOH A 157 557 465 HOH HOH . K 6 HOH A 158 558 466 HOH HOH . K 6 HOH A 159 559 467 HOH HOH . K 6 HOH A 160 560 468 HOH HOH . K 6 HOH A 161 561 469 HOH HOH . K 6 HOH A 162 562 470 HOH HOH . K 6 HOH A 163 563 471 HOH HOH . K 6 HOH A 164 564 472 HOH HOH . K 6 HOH A 165 565 473 HOH HOH . K 6 HOH A 166 566 474 HOH HOH . K 6 HOH A 167 567 475 HOH HOH . K 6 HOH A 168 568 476 HOH HOH . K 6 HOH A 169 569 477 HOH HOH . K 6 HOH A 170 570 478 HOH HOH . K 6 HOH A 171 571 479 HOH HOH . K 6 HOH A 172 572 480 HOH HOH . K 6 HOH A 173 573 481 HOH HOH . K 6 HOH A 174 574 482 HOH HOH . K 6 HOH A 175 575 483 HOH HOH . K 6 HOH A 176 576 484 HOH HOH . K 6 HOH A 177 577 485 HOH HOH . K 6 HOH A 178 578 486 HOH HOH . K 6 HOH A 179 579 487 HOH HOH . K 6 HOH A 180 580 488 HOH HOH . K 6 HOH A 181 581 489 HOH HOH . K 6 HOH A 182 582 490 HOH HOH . K 6 HOH A 183 583 491 HOH HOH . K 6 HOH A 184 584 492 HOH HOH . K 6 HOH A 185 585 493 HOH HOH . K 6 HOH A 186 586 494 HOH HOH . K 6 HOH A 187 587 495 HOH HOH . K 6 HOH A 188 588 496 HOH HOH . K 6 HOH A 189 589 497 HOH HOH . K 6 HOH A 190 590 498 HOH HOH . K 6 HOH A 191 591 499 HOH HOH . K 6 HOH A 192 592 500 HOH HOH . K 6 HOH A 193 593 501 HOH HOH . K 6 HOH A 194 594 502 HOH HOH . K 6 HOH A 195 595 503 HOH HOH . K 6 HOH A 196 596 504 HOH HOH . K 6 HOH A 197 597 505 HOH HOH . K 6 HOH A 198 598 506 HOH HOH . K 6 HOH A 199 599 507 HOH HOH . K 6 HOH A 200 600 508 HOH HOH . K 6 HOH A 201 601 509 HOH HOH . K 6 HOH A 202 602 510 HOH HOH . K 6 HOH A 203 603 511 HOH HOH . K 6 HOH A 204 604 512 HOH HOH . K 6 HOH A 205 605 513 HOH HOH . K 6 HOH A 206 606 514 HOH HOH . K 6 HOH A 207 607 515 HOH HOH . K 6 HOH A 208 608 516 HOH HOH . K 6 HOH A 209 609 517 HOH HOH . K 6 HOH A 210 610 518 HOH HOH . K 6 HOH A 211 611 519 HOH HOH . K 6 HOH A 212 612 520 HOH HOH . K 6 HOH A 213 613 521 HOH HOH . K 6 HOH A 214 614 522 HOH HOH . K 6 HOH A 215 615 523 HOH HOH . K 6 HOH A 216 616 524 HOH HOH . K 6 HOH A 217 617 525 HOH HOH . K 6 HOH A 218 618 526 HOH HOH . K 6 HOH A 219 619 527 HOH HOH . K 6 HOH A 220 620 528 HOH HOH . K 6 HOH A 221 621 529 HOH HOH . K 6 HOH A 222 622 530 HOH HOH . K 6 HOH A 223 623 531 HOH HOH . K 6 HOH A 224 624 532 HOH HOH . K 6 HOH A 225 625 533 HOH HOH . K 6 HOH A 226 626 534 HOH HOH . K 6 HOH A 227 627 535 HOH HOH . K 6 HOH A 228 628 536 HOH HOH . K 6 HOH A 229 629 537 HOH HOH . K 6 HOH A 230 630 538 HOH HOH . K 6 HOH A 231 631 539 HOH HOH . K 6 HOH A 232 632 540 HOH HOH . K 6 HOH A 233 633 541 HOH HOH . K 6 HOH A 234 634 542 HOH HOH . K 6 HOH A 235 635 543 HOH HOH . K 6 HOH A 236 636 544 HOH HOH . K 6 HOH A 237 637 545 HOH HOH . K 6 HOH A 238 638 546 HOH HOH . K 6 HOH A 239 639 547 HOH HOH . K 6 HOH A 240 640 548 HOH HOH . K 6 HOH A 241 641 549 HOH HOH . K 6 HOH A 242 642 550 HOH HOH . K 6 HOH A 243 643 551 HOH HOH . K 6 HOH A 244 644 552 HOH HOH . K 6 HOH A 245 645 553 HOH HOH . K 6 HOH A 246 646 554 HOH HOH . K 6 HOH A 247 647 555 HOH HOH . K 6 HOH A 248 648 556 HOH HOH . K 6 HOH A 249 649 557 HOH HOH . K 6 HOH A 250 650 558 HOH HOH . K 6 HOH A 251 651 559 HOH HOH . K 6 HOH A 252 652 560 HOH HOH . K 6 HOH A 253 653 561 HOH HOH . K 6 HOH A 254 654 562 HOH HOH . K 6 HOH A 255 655 563 HOH HOH . K 6 HOH A 256 656 564 HOH HOH . K 6 HOH A 257 657 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 1.078 -0.483 6.687 0.5 29.11 ? C1 GOL 306 A 1 HETATM 2 O O1 GOL . . . H 5 1.296 -0.776 8.067 0.5 26.16 ? O1 GOL 306 A 1 HETATM 3 C C2 GOL . . . H 5 0.095 0.665 6.577 0.5 26.49 ? C2 GOL 306 A 1 HETATM 4 O O2 GOL . . . H 5 -1.207 0.092 6.421 0.5 32.1 ? O2 GOL 306 A 1 HETATM 5 C C3 GOL . . . H 5 0.163 1.506 7.843 0.5 29.05 ? C3 GOL 306 A 1 HETATM 6 O O3 GOL . . . H 5 -1.141 1.631 8.409 0.5 40.36 ? O3 GOL 306 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #