data_4K3H # _model_server_result.job_id qGNMjSpBxiNZ8auStrLaRw _model_server_result.datetime_utc '2025-02-05 17:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":203}' # _entry.id 4K3H # _exptl.entry_id 4K3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K3H _cell.length_a 94.11 _cell.length_b 94.11 _cell.length_c 175.8 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,BA,CA 1 1 C,D,N,O,P,Q,DA,EA 2 1 E,F,R,S,T,U,V,FA,GA 3 1 G,H,W,X,Y,Z,AA,HA,IA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 U N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 22 B CYS 23 1_555 B SG CYS 90 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 C SG CYS 22 C CYS 23 1_555 C SG CYS 90 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 90 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 E SG CYS 22 E CYS 23 1_555 E SG CYS 90 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 F SG CYS 22 F CYS 23 1_555 F SG CYS 90 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 G SG CYS 22 G CYS 23 1_555 G SG CYS 90 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 H SG CYS 22 H CYS 23 1_555 H SG CYS 90 H CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D OG1 THR 26 D THR 27 1_555 Q C1 MAN . D MAN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 E OG1 THR 26 E THR 27 1_555 U C1 MAN . E MAN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 H OG1 THR 26 H THR 27 1_555 AA C1 MAN . H MAN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 285 n n C1 O1 MAN sing 286 n n C1 O5 MAN sing 287 n n C1 H1 MAN sing 288 n n C2 C3 MAN sing 289 n n C2 O2 MAN sing 290 n n C2 H2 MAN sing 291 n n C3 C4 MAN sing 292 n n C3 O3 MAN sing 293 n n C3 H3 MAN sing 294 n n C4 C5 MAN sing 295 n n C4 O4 MAN sing 296 n n C4 H4 MAN sing 297 n n C5 C6 MAN sing 298 n n C5 O5 MAN sing 299 n n C5 H5 MAN sing 300 n n C6 O6 MAN sing 301 n n C6 H61 MAN sing 302 n n C6 H62 MAN sing 303 n n O1 HO1 MAN sing 304 n n O2 HO2 MAN sing 305 n n O3 HO3 MAN sing 306 n n O4 HO4 MAN sing 307 n n O6 HO6 MAN sing 308 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4K3H _atom_sites.fract_transf_matrix[1][1] 0.010626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 1OM A 1 201 1 1OM 1OM . J 3 GOL B 1 201 1 GOL GOL . K 3 GOL B 1 202 5 GOL GOL . L 3 GOL B 1 203 6 GOL GOL . M 3 GOL B 1 204 10 GOL GOL . N 3 GOL C 1 201 2 GOL GOL . O 2 1OM D 1 201 1 1OM 1OM . P 3 GOL D 1 202 9 GOL GOL . Q 4 MAN D 1 203 427 MAN MAN . R 2 1OM E 1 201 1 1OM 1OM . S 3 GOL E 1 202 3 GOL GOL . T 3 GOL E 1 203 8 GOL GOL . U 4 MAN E 1 204 427 MAN MAN . V 3 GOL F 1 201 12 GOL GOL . W 2 1OM G 1 201 1 1OM 1OM . X 3 GOL G 1 202 4 GOL GOL . Y 3 GOL H 1 201 7 GOL GOL . Z 3 GOL H 1 202 11 GOL GOL . AA 4 MAN H 1 203 427 MAN MAN . BA 5 HOH A 1 301 8 HOH HOH . BA 5 HOH A 2 302 10 HOH HOH . BA 5 HOH A 3 303 11 HOH HOH . BA 5 HOH A 4 304 14 HOH HOH . BA 5 HOH A 5 305 20 HOH HOH . BA 5 HOH A 6 306 48 HOH HOH . BA 5 HOH A 7 307 55 HOH HOH . BA 5 HOH A 8 308 58 HOH HOH . BA 5 HOH A 9 309 60 HOH HOH . BA 5 HOH A 10 310 64 HOH HOH . BA 5 HOH A 11 311 71 HOH HOH . BA 5 HOH A 12 312 74 HOH HOH . BA 5 HOH A 13 313 76 HOH HOH . BA 5 HOH A 14 314 85 HOH HOH . BA 5 HOH A 15 315 86 HOH HOH . BA 5 HOH A 16 316 90 HOH HOH . BA 5 HOH A 17 317 92 HOH HOH . BA 5 HOH A 18 318 94 HOH HOH . BA 5 HOH A 19 319 95 HOH HOH . BA 5 HOH A 20 320 96 HOH HOH . BA 5 HOH A 21 321 103 HOH HOH . BA 5 HOH A 22 322 109 HOH HOH . BA 5 HOH A 23 323 119 HOH HOH . BA 5 HOH A 24 324 121 HOH HOH . BA 5 HOH A 25 325 132 HOH HOH . BA 5 HOH A 26 326 136 HOH HOH . BA 5 HOH A 27 327 137 HOH HOH . BA 5 HOH A 28 328 140 HOH HOH . BA 5 HOH A 29 329 141 HOH HOH . BA 5 HOH A 30 330 156 HOH HOH . BA 5 HOH A 31 331 157 HOH HOH . BA 5 HOH A 32 332 159 HOH HOH . BA 5 HOH A 33 333 161 HOH HOH . BA 5 HOH A 34 334 162 HOH HOH . BA 5 HOH A 35 335 163 HOH HOH . CA 5 HOH B 1 301 39 HOH HOH . CA 5 HOH B 2 302 43 HOH HOH . CA 5 HOH B 3 303 49 HOH HOH . CA 5 HOH B 4 304 56 HOH HOH . CA 5 HOH B 5 305 63 HOH HOH . CA 5 HOH B 6 306 67 HOH HOH . CA 5 HOH B 7 307 68 HOH HOH . CA 5 HOH B 8 308 81 HOH HOH . CA 5 HOH B 9 309 82 HOH HOH . CA 5 HOH B 10 310 83 HOH HOH . CA 5 HOH B 11 311 101 HOH HOH . CA 5 HOH B 12 312 108 HOH HOH . CA 5 HOH B 13 313 113 HOH HOH . CA 5 HOH B 14 314 125 HOH HOH . CA 5 HOH B 15 315 131 HOH HOH . CA 5 HOH B 16 316 134 HOH HOH . CA 5 HOH B 17 317 138 HOH HOH . CA 5 HOH B 18 318 142 HOH HOH . CA 5 HOH B 19 319 143 HOH HOH . CA 5 HOH B 20 320 144 HOH HOH . CA 5 HOH B 21 321 148 HOH HOH . CA 5 HOH B 22 322 167 HOH HOH . DA 5 HOH C 1 301 2 HOH HOH . DA 5 HOH C 2 302 4 HOH HOH . DA 5 HOH C 3 303 21 HOH HOH . DA 5 HOH C 4 304 23 HOH HOH . DA 5 HOH C 5 305 24 HOH HOH . DA 5 HOH C 6 306 31 HOH HOH . DA 5 HOH C 7 307 38 HOH HOH . DA 5 HOH C 8 308 40 HOH HOH . DA 5 HOH C 9 309 41 HOH HOH . DA 5 HOH C 10 310 42 HOH HOH . DA 5 HOH C 11 311 47 HOH HOH . DA 5 HOH C 12 312 61 HOH HOH . DA 5 HOH C 13 313 65 HOH HOH . DA 5 HOH C 14 314 66 HOH HOH . DA 5 HOH C 15 315 73 HOH HOH . DA 5 HOH C 16 316 87 HOH HOH . DA 5 HOH C 17 317 88 HOH HOH . DA 5 HOH C 18 318 91 HOH HOH . DA 5 HOH C 19 319 100 HOH HOH . DA 5 HOH C 20 320 102 HOH HOH . DA 5 HOH C 21 321 104 HOH HOH . DA 5 HOH C 22 322 106 HOH HOH . DA 5 HOH C 23 323 107 HOH HOH . DA 5 HOH C 24 324 111 HOH HOH . DA 5 HOH C 25 325 120 HOH HOH . DA 5 HOH C 26 326 127 HOH HOH . DA 5 HOH C 27 327 152 HOH HOH . DA 5 HOH C 28 328 153 HOH HOH . DA 5 HOH C 29 329 158 HOH HOH . DA 5 HOH C 30 330 160 HOH HOH . EA 5 HOH D 1 301 1 HOH HOH . EA 5 HOH D 2 302 12 HOH HOH . EA 5 HOH D 3 303 18 HOH HOH . EA 5 HOH D 4 304 45 HOH HOH . EA 5 HOH D 5 305 46 HOH HOH . EA 5 HOH D 6 306 50 HOH HOH . EA 5 HOH D 7 307 52 HOH HOH . EA 5 HOH D 8 308 54 HOH HOH . EA 5 HOH D 9 309 62 HOH HOH . EA 5 HOH D 10 310 69 HOH HOH . EA 5 HOH D 11 311 70 HOH HOH . EA 5 HOH D 12 312 75 HOH HOH . EA 5 HOH D 13 313 89 HOH HOH . EA 5 HOH D 14 314 93 HOH HOH . EA 5 HOH D 15 315 112 HOH HOH . EA 5 HOH D 16 316 114 HOH HOH . EA 5 HOH D 17 317 115 HOH HOH . EA 5 HOH D 18 318 116 HOH HOH . EA 5 HOH D 19 319 117 HOH HOH . EA 5 HOH D 20 320 122 HOH HOH . EA 5 HOH D 21 321 126 HOH HOH . EA 5 HOH D 22 322 130 HOH HOH . EA 5 HOH D 23 323 139 HOH HOH . EA 5 HOH D 24 324 146 HOH HOH . EA 5 HOH D 25 325 150 HOH HOH . EA 5 HOH D 26 326 165 HOH HOH . EA 5 HOH D 27 327 166 HOH HOH . EA 5 HOH D 28 328 169 HOH HOH . FA 5 HOH E 1 301 13 HOH HOH . FA 5 HOH E 2 302 17 HOH HOH . FA 5 HOH E 3 303 34 HOH HOH . FA 5 HOH E 4 304 51 HOH HOH . FA 5 HOH E 5 305 53 HOH HOH . FA 5 HOH E 6 306 77 HOH HOH . FA 5 HOH E 7 307 79 HOH HOH . FA 5 HOH E 8 308 97 HOH HOH . FA 5 HOH E 9 309 99 HOH HOH . FA 5 HOH E 10 310 118 HOH HOH . FA 5 HOH E 11 311 128 HOH HOH . FA 5 HOH E 12 312 135 HOH HOH . FA 5 HOH E 13 313 147 HOH HOH . FA 5 HOH E 14 314 149 HOH HOH . FA 5 HOH E 15 315 154 HOH HOH . FA 5 HOH E 16 316 164 HOH HOH . FA 5 HOH E 17 317 168 HOH HOH . GA 5 HOH F 1 301 26 HOH HOH . GA 5 HOH F 2 302 27 HOH HOH . GA 5 HOH F 3 303 28 HOH HOH . GA 5 HOH F 4 304 30 HOH HOH . GA 5 HOH F 5 305 57 HOH HOH . GA 5 HOH F 6 306 80 HOH HOH . GA 5 HOH F 7 307 84 HOH HOH . HA 5 HOH G 1 301 5 HOH HOH . HA 5 HOH G 2 302 6 HOH HOH . HA 5 HOH G 3 303 7 HOH HOH . HA 5 HOH G 4 304 9 HOH HOH . HA 5 HOH G 5 305 15 HOH HOH . HA 5 HOH G 6 306 19 HOH HOH . HA 5 HOH G 7 307 22 HOH HOH . HA 5 HOH G 8 308 36 HOH HOH . HA 5 HOH G 9 309 37 HOH HOH . HA 5 HOH G 10 310 59 HOH HOH . HA 5 HOH G 11 311 129 HOH HOH . IA 5 HOH H 1 301 3 HOH HOH . IA 5 HOH H 2 302 16 HOH HOH . IA 5 HOH H 3 303 25 HOH HOH . IA 5 HOH H 4 304 29 HOH HOH . IA 5 HOH H 5 305 32 HOH HOH . IA 5 HOH H 6 306 33 HOH HOH . IA 5 HOH H 7 307 35 HOH HOH . IA 5 HOH H 8 308 44 HOH HOH . IA 5 HOH H 9 309 72 HOH HOH . IA 5 HOH H 10 310 78 HOH HOH . IA 5 HOH H 11 311 98 HOH HOH . IA 5 HOH H 12 312 105 HOH HOH . IA 5 HOH H 13 313 110 HOH HOH . IA 5 HOH H 14 314 123 HOH HOH . IA 5 HOH H 15 315 124 HOH HOH . IA 5 HOH H 16 316 133 HOH HOH . IA 5 HOH H 17 317 145 HOH HOH . IA 5 HOH H 18 318 151 HOH HOH . IA 5 HOH H 19 319 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . Q 4 -12.873 -16.303 -2.746 1 112.71 ? C1 MAN 203 D 1 HETATM 2 C C2 MAN . . . Q 4 -12.934 -17.464 -1.761 1 113.1 ? C2 MAN 203 D 1 HETATM 3 C C3 MAN . . . Q 4 -12.254 -17.063 -0.453 1 112.63 ? C3 MAN 203 D 1 HETATM 4 C C4 MAN . . . Q 4 -10.879 -16.439 -0.726 1 112.37 ? C4 MAN 203 D 1 HETATM 5 C C5 MAN . . . Q 4 -10.987 -15.35 -1.797 1 112.8 ? C5 MAN 203 D 1 HETATM 6 C C6 MAN . . . Q 4 -9.652 -14.689 -2.136 1 111.47 ? C6 MAN 203 D 1 HETATM 7 O O2 MAN . . . Q 4 -12.341 -18.617 -2.33 1 112.64 ? O2 MAN 203 D 1 HETATM 8 O O3 MAN . . . Q 4 -12.161 -18.193 0.391 1 110.57 ? O3 MAN 203 D 1 HETATM 9 O O4 MAN . . . Q 4 -10.355 -15.875 0.453 1 110.58 ? O4 MAN 203 D 1 HETATM 10 O O5 MAN . . . Q 4 -11.539 -15.911 -2.968 1 113.12 ? O5 MAN 203 D 1 HETATM 11 O O6 MAN . . . Q 4 -9.195 -13.926 -1.038 1 113.64 ? O6 MAN 203 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #