data_4K42 # _model_server_result.job_id iWFjXb3efKLIv6O71cK7SA _model_server_result.datetime_utc '2024-11-24 20:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 4K42 # _exptl.entry_id 4K42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.42 _cell.angle_gamma 90 _cell.entry_id 4K42 _cell.length_a 54.65 _cell.length_b 67.343 _cell.length_c 207.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E CA CA . A CA 401 1_555 F O2B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 E CA CA . A CA 401 1_555 Q O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 E CA CA . A CA 401 1_555 Q O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc4 K CA CA . C CA 401 1_555 L O3B ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 K CA CA . C CA 401 1_555 L O2B ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc6 N CA CA . D CA 401 1_555 O O3B ADP . D ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc7 N CA CA . D CA 401 1_555 O O2B ADP . D ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc8 N CA CA . D CA 401 1_555 T O HOH . D HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4K42 _atom_sites.fract_transf_matrix[1][1] 0.018298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000775 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 401 376 CA CA . F 3 ADP A 1 402 380 ADP ADP . G 4 NWM A 1 403 381 NWM NWM . H 2 CA B 1 401 376 CA CA . I 3 ADP B 1 402 380 ADP ADP . J 4 NWM B 1 403 381 NWM NWM . K 2 CA C 1 401 376 CA CA . L 3 ADP C 1 402 380 ADP ADP . M 4 NWM C 1 403 381 NWM NWM . N 2 CA D 1 401 376 CA CA . O 3 ADP D 1 402 380 ADP ADP . P 4 NWM D 1 403 381 NWM NWM . Q 5 HOH A 1 501 8 HOH HOH . Q 5 HOH A 2 502 9 HOH HOH . Q 5 HOH A 3 503 15 HOH HOH . Q 5 HOH A 4 504 19 HOH HOH . Q 5 HOH A 5 505 21 HOH HOH . Q 5 HOH A 6 506 25 HOH HOH . Q 5 HOH A 7 507 29 HOH HOH . Q 5 HOH A 8 508 30 HOH HOH . Q 5 HOH A 9 509 34 HOH HOH . Q 5 HOH A 10 510 35 HOH HOH . Q 5 HOH A 11 511 37 HOH HOH . Q 5 HOH A 12 512 42 HOH HOH . Q 5 HOH A 13 513 43 HOH HOH . Q 5 HOH A 14 514 44 HOH HOH . Q 5 HOH A 15 515 46 HOH HOH . Q 5 HOH A 16 516 49 HOH HOH . Q 5 HOH A 17 517 50 HOH HOH . Q 5 HOH A 18 518 52 HOH HOH . Q 5 HOH A 19 519 53 HOH HOH . Q 5 HOH A 20 520 54 HOH HOH . Q 5 HOH A 21 521 58 HOH HOH . Q 5 HOH A 22 522 59 HOH HOH . Q 5 HOH A 23 523 62 HOH HOH . Q 5 HOH A 24 524 65 HOH HOH . Q 5 HOH A 25 525 67 HOH HOH . Q 5 HOH A 26 526 68 HOH HOH . Q 5 HOH A 27 527 69 HOH HOH . Q 5 HOH A 28 528 74 HOH HOH . Q 5 HOH A 29 529 78 HOH HOH . Q 5 HOH A 30 530 79 HOH HOH . Q 5 HOH A 31 531 80 HOH HOH . Q 5 HOH A 32 532 83 HOH HOH . Q 5 HOH A 33 533 86 HOH HOH . Q 5 HOH A 34 534 87 HOH HOH . Q 5 HOH A 35 535 90 HOH HOH . Q 5 HOH A 36 536 91 HOH HOH . Q 5 HOH A 37 537 95 HOH HOH . Q 5 HOH A 38 538 97 HOH HOH . Q 5 HOH A 39 539 100 HOH HOH . Q 5 HOH A 40 540 101 HOH HOH . Q 5 HOH A 41 541 102 HOH HOH . Q 5 HOH A 42 542 104 HOH HOH . R 5 HOH B 1 501 5 HOH HOH . R 5 HOH B 2 502 6 HOH HOH . R 5 HOH B 3 503 7 HOH HOH . R 5 HOH B 4 504 16 HOH HOH . R 5 HOH B 5 505 20 HOH HOH . R 5 HOH B 6 506 26 HOH HOH . R 5 HOH B 7 507 27 HOH HOH . R 5 HOH B 8 508 38 HOH HOH . R 5 HOH B 9 509 51 HOH HOH . R 5 HOH B 10 510 56 HOH HOH . R 5 HOH B 11 511 60 HOH HOH . R 5 HOH B 12 512 81 HOH HOH . R 5 HOH B 13 513 84 HOH HOH . R 5 HOH B 14 514 89 HOH HOH . R 5 HOH B 15 515 96 HOH HOH . S 5 HOH C 1 501 1 HOH HOH . S 5 HOH C 2 502 2 HOH HOH . S 5 HOH C 3 503 4 HOH HOH . S 5 HOH C 4 504 10 HOH HOH . S 5 HOH C 5 505 12 HOH HOH . S 5 HOH C 6 506 17 HOH HOH . S 5 HOH C 7 507 22 HOH HOH . S 5 HOH C 8 508 23 HOH HOH . S 5 HOH C 9 509 28 HOH HOH . S 5 HOH C 10 510 31 HOH HOH . S 5 HOH C 11 511 32 HOH HOH . S 5 HOH C 12 512 36 HOH HOH . S 5 HOH C 13 513 39 HOH HOH . S 5 HOH C 14 514 40 HOH HOH . S 5 HOH C 15 515 41 HOH HOH . S 5 HOH C 16 516 47 HOH HOH . S 5 HOH C 17 517 48 HOH HOH . S 5 HOH C 18 518 55 HOH HOH . S 5 HOH C 19 519 57 HOH HOH . S 5 HOH C 20 520 61 HOH HOH . S 5 HOH C 21 521 63 HOH HOH . S 5 HOH C 22 522 64 HOH HOH . S 5 HOH C 23 523 70 HOH HOH . S 5 HOH C 24 524 71 HOH HOH . S 5 HOH C 25 525 72 HOH HOH . S 5 HOH C 26 526 73 HOH HOH . S 5 HOH C 27 527 75 HOH HOH . S 5 HOH C 28 528 76 HOH HOH . S 5 HOH C 29 529 82 HOH HOH . S 5 HOH C 30 530 85 HOH HOH . S 5 HOH C 31 531 88 HOH HOH . S 5 HOH C 32 532 92 HOH HOH . S 5 HOH C 33 533 93 HOH HOH . S 5 HOH C 34 534 98 HOH HOH . S 5 HOH C 35 535 105 HOH HOH . T 5 HOH D 1 501 3 HOH HOH . T 5 HOH D 2 502 11 HOH HOH . T 5 HOH D 3 503 13 HOH HOH . T 5 HOH D 4 504 14 HOH HOH . T 5 HOH D 5 505 18 HOH HOH . T 5 HOH D 6 506 24 HOH HOH . T 5 HOH D 7 507 33 HOH HOH . T 5 HOH D 8 508 66 HOH HOH . T 5 HOH D 9 509 77 HOH HOH . T 5 HOH D 10 510 94 HOH HOH . T 5 HOH D 11 511 99 HOH HOH . T 5 HOH D 12 512 103 HOH HOH . T 5 HOH D 13 513 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.363 _atom_site.Cartn_y -24.74 _atom_site.Cartn_z -19.173 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #