data_4K46
#
_model_server_result.job_id            AX-GGxu6sBAoaay7HHkXbw 
_model_server_result.datetime_utc      '2024-12-21 12:38:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k46 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4K46 
#
_exptl.entry_id    4K46 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K46 
_cell.length_a            42.59 
_cell.length_b            70.23 
_cell.length_c            71.68 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K46 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4K46 
_atom_sites.fract_transf_matrix[1][1]    0.02348 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 1 ADP ADP . 
C 3 AMP A 1 302 1 AMP AMP . 
D 4 PO4 A 1 303 1 PO4 PO4 . 
E 5 HOH A 1 401 1 HOH HOH . 
E 5 HOH A 2 402 2 HOH HOH . 
E 5 HOH A 3 403 3 HOH HOH . 
E 5 HOH A 4 404 4 HOH HOH . 
E 5 HOH A 5 405 5 HOH HOH . 
E 5 HOH A 6 406 6 HOH HOH . 
E 5 HOH A 7 407 7 HOH HOH . 
E 5 HOH A 8 408 8 HOH HOH . 
E 5 HOH A 9 409 9 HOH HOH . 
E 5 HOH A 10 410 10 HOH HOH . 
E 5 HOH A 11 411 11 HOH HOH . 
E 5 HOH A 12 412 12 HOH HOH . 
E 5 HOH A 13 413 13 HOH HOH . 
E 5 HOH A 14 414 14 HOH HOH . 
E 5 HOH A 15 415 15 HOH HOH . 
E 5 HOH A 16 416 16 HOH HOH . 
E 5 HOH A 17 417 17 HOH HOH . 
E 5 HOH A 18 418 18 HOH HOH . 
E 5 HOH A 19 419 19 HOH HOH . 
E 5 HOH A 20 420 20 HOH HOH . 
E 5 HOH A 21 421 21 HOH HOH . 
E 5 HOH A 22 422 22 HOH HOH . 
E 5 HOH A 23 423 23 HOH HOH . 
E 5 HOH A 24 424 24 HOH HOH . 
E 5 HOH A 25 425 25 HOH HOH . 
E 5 HOH A 26 426 26 HOH HOH . 
E 5 HOH A 27 427 27 HOH HOH . 
E 5 HOH A 28 428 28 HOH HOH . 
E 5 HOH A 29 429 29 HOH HOH . 
E 5 HOH A 30 430 30 HOH HOH . 
E 5 HOH A 31 431 31 HOH HOH . 
E 5 HOH A 32 432 32 HOH HOH . 
E 5 HOH A 33 433 33 HOH HOH . 
E 5 HOH A 34 434 34 HOH HOH . 
E 5 HOH A 35 435 35 HOH HOH . 
E 5 HOH A 36 436 36 HOH HOH . 
E 5 HOH A 37 437 37 HOH HOH . 
E 5 HOH A 38 438 38 HOH HOH . 
E 5 HOH A 39 439 39 HOH HOH . 
E 5 HOH A 40 440 40 HOH HOH . 
E 5 HOH A 41 441 41 HOH HOH . 
E 5 HOH A 42 442 42 HOH HOH . 
E 5 HOH A 43 443 43 HOH HOH . 
E 5 HOH A 44 444 44 HOH HOH . 
E 5 HOH A 45 445 45 HOH HOH . 
E 5 HOH A 46 446 46 HOH HOH . 
E 5 HOH A 47 447 47 HOH HOH . 
E 5 HOH A 48 448 48 HOH HOH . 
E 5 HOH A 49 449 49 HOH HOH . 
E 5 HOH A 50 450 50 HOH HOH . 
E 5 HOH A 51 451 51 HOH HOH . 
E 5 HOH A 52 452 52 HOH HOH . 
E 5 HOH A 53 453 53 HOH HOH . 
E 5 HOH A 54 454 54 HOH HOH . 
E 5 HOH A 55 455 55 HOH HOH . 
E 5 HOH A 56 456 56 HOH HOH . 
E 5 HOH A 57 457 57 HOH HOH . 
E 5 HOH A 58 458 58 HOH HOH . 
E 5 HOH A 59 459 59 HOH HOH . 
E 5 HOH A 60 460 60 HOH HOH . 
E 5 HOH A 61 461 61 HOH HOH . 
E 5 HOH A 62 462 62 HOH HOH . 
E 5 HOH A 63 463 63 HOH HOH . 
E 5 HOH A 64 464 64 HOH HOH . 
E 5 HOH A 65 465 65 HOH HOH . 
E 5 HOH A 66 466 66 HOH HOH . 
E 5 HOH A 67 467 67 HOH HOH . 
E 5 HOH A 68 468 68 HOH HOH . 
E 5 HOH A 69 469 69 HOH HOH . 
E 5 HOH A 70 470 70 HOH HOH . 
E 5 HOH A 71 471 71 HOH HOH . 
E 5 HOH A 72 472 72 HOH HOH . 
E 5 HOH A 73 473 73 HOH HOH . 
E 5 HOH A 74 474 74 HOH HOH . 
E 5 HOH A 75 475 75 HOH HOH . 
E 5 HOH A 76 476 76 HOH HOH . 
E 5 HOH A 77 477 77 HOH HOH . 
E 5 HOH A 78 478 78 HOH HOH . 
E 5 HOH A 79 479 79 HOH HOH . 
E 5 HOH A 80 480 80 HOH HOH . 
E 5 HOH A 81 481 81 HOH HOH . 
E 5 HOH A 82 482 83 HOH HOH . 
E 5 HOH A 83 483 84 HOH HOH . 
E 5 HOH A 84 484 85 HOH HOH . 
E 5 HOH A 85 485 86 HOH HOH . 
E 5 HOH A 86 486 87 HOH HOH . 
E 5 HOH A 87 487 88 HOH HOH . 
E 5 HOH A 88 488 89 HOH HOH . 
E 5 HOH A 89 489 90 HOH HOH . 
E 5 HOH A 90 490 91 HOH HOH . 
E 5 HOH A 91 491 92 HOH HOH . 
E 5 HOH A 92 492 93 HOH HOH . 
E 5 HOH A 93 493 94 HOH HOH . 
E 5 HOH A 94 494 95 HOH HOH . 
E 5 HOH A 95 495 96 HOH HOH . 
E 5 HOH A 96 496 97 HOH HOH . 
E 5 HOH A 97 497 98 HOH HOH . 
E 5 HOH A 98 498 99 HOH HOH . 
E 5 HOH A 99 499 100 HOH HOH . 
E 5 HOH A 100 500 101 HOH HOH . 
E 5 HOH A 101 501 102 HOH HOH . 
E 5 HOH A 102 502 103 HOH HOH . 
E 5 HOH A 103 503 104 HOH HOH . 
E 5 HOH A 104 504 105 HOH HOH . 
E 5 HOH A 105 505 106 HOH HOH . 
E 5 HOH A 106 506 107 HOH HOH . 
E 5 HOH A 107 507 108 HOH HOH . 
E 5 HOH A 108 508 109 HOH HOH . 
E 5 HOH A 109 509 110 HOH HOH . 
E 5 HOH A 110 510 111 HOH HOH . 
E 5 HOH A 111 511 112 HOH HOH . 
E 5 HOH A 112 512 113 HOH HOH . 
E 5 HOH A 113 513 114 HOH HOH . 
E 5 HOH A 114 514 115 HOH HOH . 
E 5 HOH A 115 515 116 HOH HOH . 
E 5 HOH A 116 516 117 HOH HOH . 
E 5 HOH A 117 517 118 HOH HOH . 
E 5 HOH A 118 518 119 HOH HOH . 
E 5 HOH A 119 519 120 HOH HOH . 
E 5 HOH A 120 520 121 HOH HOH . 
E 5 HOH A 121 521 122 HOH HOH . 
E 5 HOH A 122 522 123 HOH HOH . 
E 5 HOH A 123 523 124 HOH HOH . 
E 5 HOH A 124 524 126 HOH HOH . 
E 5 HOH A 125 525 127 HOH HOH . 
E 5 HOH A 126 526 128 HOH HOH . 
E 5 HOH A 127 527 129 HOH HOH . 
E 5 HOH A 128 528 130 HOH HOH . 
E 5 HOH A 129 529 131 HOH HOH . 
E 5 HOH A 130 530 132 HOH HOH . 
E 5 HOH A 131 531 133 HOH HOH . 
E 5 HOH A 132 532 134 HOH HOH . 
E 5 HOH A 133 533 135 HOH HOH . 
E 5 HOH A 134 534 136 HOH HOH . 
E 5 HOH A 135 535 137 HOH HOH . 
E 5 HOH A 136 536 138 HOH HOH . 
E 5 HOH A 137 537 139 HOH HOH . 
E 5 HOH A 138 538 141 HOH HOH . 
E 5 HOH A 139 539 142 HOH HOH . 
E 5 HOH A 140 540 143 HOH HOH . 
E 5 HOH A 141 541 144 HOH HOH . 
E 5 HOH A 142 542 145 HOH HOH . 
E 5 HOH A 143 543 146 HOH HOH . 
E 5 HOH A 144 544 147 HOH HOH . 
E 5 HOH A 145 545 148 HOH HOH . 
E 5 HOH A 146 546 149 HOH HOH . 
E 5 HOH A 147 547 150 HOH HOH . 
E 5 HOH A 148 548 151 HOH HOH . 
E 5 HOH A 149 549 152 HOH HOH . 
E 5 HOH A 150 550 153 HOH HOH . 
E 5 HOH A 151 551 154 HOH HOH . 
E 5 HOH A 152 552 155 HOH HOH . 
E 5 HOH A 153 553 156 HOH HOH . 
E 5 HOH A 154 554 157 HOH HOH . 
E 5 HOH A 155 555 158 HOH HOH . 
E 5 HOH A 156 556 159 HOH HOH . 
E 5 HOH A 157 557 160 HOH HOH . 
E 5 HOH A 158 558 161 HOH HOH . 
E 5 HOH A 159 559 162 HOH HOH . 
E 5 HOH A 160 560 163 HOH HOH . 
E 5 HOH A 161 561 164 HOH HOH . 
E 5 HOH A 162 562 165 HOH HOH . 
E 5 HOH A 163 563 166 HOH HOH . 
E 5 HOH A 164 564 167 HOH HOH . 
E 5 HOH A 165 565 168 HOH HOH . 
E 5 HOH A 166 566 169 HOH HOH . 
E 5 HOH A 167 567 170 HOH HOH . 
E 5 HOH A 168 568 171 HOH HOH . 
E 5 HOH A 169 569 172 HOH HOH . 
E 5 HOH A 170 570 173 HOH HOH . 
E 5 HOH A 171 571 174 HOH HOH . 
E 5 HOH A 172 572 175 HOH HOH . 
E 5 HOH A 173 573 176 HOH HOH . 
E 5 HOH A 174 574 177 HOH HOH . 
E 5 HOH A 175 575 178 HOH HOH . 
E 5 HOH A 176 576 179 HOH HOH . 
E 5 HOH A 177 577 180 HOH HOH . 
E 5 HOH A 178 578 181 HOH HOH . 
E 5 HOH A 179 579 182 HOH HOH . 
E 5 HOH A 180 580 183 HOH HOH . 
E 5 HOH A 181 581 184 HOH HOH . 
E 5 HOH A 182 582 185 HOH HOH . 
E 5 HOH A 183 583 186 HOH HOH . 
E 5 HOH A 184 584 187 HOH HOH . 
E 5 HOH A 185 585 188 HOH HOH . 
E 5 HOH A 186 586 189 HOH HOH . 
E 5 HOH A 187 587 191 HOH HOH . 
E 5 HOH A 188 588 192 HOH HOH . 
E 5 HOH A 189 589 193 HOH HOH . 
E 5 HOH A 190 590 194 HOH HOH . 
E 5 HOH A 191 591 195 HOH HOH . 
E 5 HOH A 192 592 196 HOH HOH . 
E 5 HOH A 193 593 197 HOH HOH . 
E 5 HOH A 194 594 198 HOH HOH . 
E 5 HOH A 195 595 199 HOH HOH . 
E 5 HOH A 196 596 200 HOH HOH . 
E 5 HOH A 197 597 201 HOH HOH . 
E 5 HOH A 198 598 202 HOH HOH . 
E 5 HOH A 199 599 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -8.933 -0.984 -16.323 1 7.79 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . B 2 -7.559 -0.901 -15.705 1 7.12 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . B 2 -10.064 -0.842 -15.321 1 5.14 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . B 2 -9.066 -0.104 -17.56 1 6.77 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . B 2 -9.112 -3.195 -18.267 1 8.28 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . B 2 -7.753 -3.033 -18.918 1 9.77 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . B 2 -10.369 -2.767 -19.004 1 7.63 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . B 2 -9.062 -2.538 -16.773 1 10.48 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . B 2 -9.26 -4.754 -17.866 1 9.99 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . B 2 -8.253 -5.411 -17.09 1 9.09 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . B 2 -7.924 -6.791 -17.674 1 9.64 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . B 2 -9.034 -7.655 -17.459 1 10.18 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . B 2 -7.703 -6.772 -19.18 1 9.22 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . B 2 -6.772 -7.827 -19.505 1 11.79 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . B 2 -9.082 -7.067 -19.748 1 10.57 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . B 2 -9.024 -7.681 -21.036 1 8.5 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . B 2 -9.693 -7.979 -18.686 1 8.51 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . B 2 -11.142 -7.758 -18.431 1 10.77 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . B 2 -11.844 -6.618 -18.628 1 11.96 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . B 2 -13.139 -6.783 -18.265 1 12.39 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . B 2 -13.272 -8.052 -17.813 1 11.36 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . B 2 -14.363 -8.897 -17.276 1 17.35 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . B 2 -15.623 -8.415 -17.135 1 14.47 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . B 2 -14.056 -10.163 -16.92 1 12.92 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . B 2 -12.828 -10.686 -17.057 1 12.17 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . B 2 -11.788 -9.983 -17.54 1 12.56 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . B 2 -11.952 -8.686 -17.926 1 15.22 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#