data_4K4E # _model_server_result.job_id zigJONSYx2ETKaXHOs1jcw _model_server_result.datetime_utc '2025-02-05 06:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1402}' # _entry.id 4K4E # _exptl.entry_id 4K4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.912 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-(5-chloro-2-methoxyphenyl)-N-[trans-4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)cyclohexyl]glycinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K4E _cell.length_a 42.44 _cell.length_b 73.264 _cell.length_c 149.059 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 131 A CYS 1234 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc2 A ND1 HIS 134 A HIS 1237 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 A SG CYS 139 A CYS 1242 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 A SG CYS 142 A CYS 1245 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc5 B SG CYS 131 B CYS 1234 1_555 E ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc6 B ND1 HIS 134 B HIS 1237 1_555 E ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 B SG CYS 139 B CYS 1242 1_555 E ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B SG CYS 142 B CYS 1245 1_555 E ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C22 H25 Cl N4 O3' _chem_comp.formula_weight 428.912 _chem_comp.id K4E _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(5-chloro-2-methoxyphenyl)-N-[trans-4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)cyclohexyl]glycinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 K4E sing 173 n n C13 C10 K4E sing 174 n n C14 C15 K4E sing 175 n n O3 C16 K4E doub 176 n n O2 C9 K4E doub 177 n n C8 C9 K4E sing 178 n n C8 N1 K4E sing 179 n n C9 N2 K4E sing 180 n n N1 C1 K4E sing 181 n n C7 O1 K4E sing 182 n n C10 N2 K4E sing 183 n n C10 C11 K4E sing 184 n n O1 C6 K4E sing 185 n n C16 N4 K4E sing 186 n n C16 N3 K4E sing 187 n n N4 C17 K4E sing 188 n n C15 N3 K4E sing 189 n n C15 C12 K4E sing 190 n n N3 C18 K4E sing 191 n n C1 C6 K4E doub 192 n y C1 C2 K4E sing 193 n y C17 C18 K4E doub 194 n y C17 C22 K4E sing 195 n y C6 C5 K4E sing 196 n y C18 C19 K4E sing 197 n y C11 C12 K4E sing 198 n n C22 C21 K4E doub 199 n y C19 C20 K4E doub 200 n y C2 C3 K4E doub 201 n y C21 C20 K4E sing 202 n y C5 C4 K4E doub 203 n y C3 C4 K4E sing 204 n y C3 CL1 K4E sing 205 n n N1 H1 K4E sing 206 n n C2 H2 K4E sing 207 n n C4 H3 K4E sing 208 n n C5 H4 K4E sing 209 n n C7 H5 K4E sing 210 n n C7 H6 K4E sing 211 n n C7 H7 K4E sing 212 n n C8 H8 K4E sing 213 n n C8 H9 K4E sing 214 n n N2 H10 K4E sing 215 n n C10 H11 K4E sing 216 n n C11 H12 K4E sing 217 n n C11 H13 K4E sing 218 n n C12 H14 K4E sing 219 n n C12 H15 K4E sing 220 n n C13 H16 K4E sing 221 n n C13 H17 K4E sing 222 n n C14 H18 K4E sing 223 n n C14 H19 K4E sing 224 n n C15 H20 K4E sing 225 n n N4 H21 K4E sing 226 n n C19 H22 K4E sing 227 n n C20 H23 K4E sing 228 n n C21 H24 K4E sing 229 n n C22 H25 K4E sing 230 n n # _atom_sites.entry_id 4K4E _atom_sites.fract_transf_matrix[1][1] 0.023563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1401 1 ZN ZN . D 3 K4E A 1 1402 1 K4E K4E . E 2 ZN B 1 1401 1 ZN ZN . F 3 K4E B 1 1402 1 K4E K4E . G 4 HOH A 1 1501 3 HOH HOH . G 4 HOH A 2 1502 6 HOH HOH . G 4 HOH A 3 1503 14 HOH HOH . G 4 HOH A 4 1504 15 HOH HOH . G 4 HOH A 5 1505 16 HOH HOH . G 4 HOH A 6 1506 18 HOH HOH . G 4 HOH A 7 1507 20 HOH HOH . G 4 HOH A 8 1508 22 HOH HOH . G 4 HOH A 9 1509 24 HOH HOH . G 4 HOH A 10 1510 28 HOH HOH . G 4 HOH A 11 1511 32 HOH HOH . G 4 HOH A 12 1512 36 HOH HOH . G 4 HOH A 13 1513 37 HOH HOH . G 4 HOH A 14 1514 38 HOH HOH . G 4 HOH A 15 1515 44 HOH HOH . G 4 HOH A 16 1516 49 HOH HOH . G 4 HOH A 17 1517 53 HOH HOH . G 4 HOH A 18 1518 54 HOH HOH . G 4 HOH A 19 1519 58 HOH HOH . G 4 HOH A 20 1520 60 HOH HOH . G 4 HOH A 21 1521 61 HOH HOH . G 4 HOH A 22 1522 73 HOH HOH . G 4 HOH A 23 1523 75 HOH HOH . G 4 HOH A 24 1524 77 HOH HOH . G 4 HOH A 25 1525 80 HOH HOH . G 4 HOH A 26 1526 81 HOH HOH . G 4 HOH A 27 1527 82 HOH HOH . G 4 HOH A 28 1528 85 HOH HOH . G 4 HOH A 29 1529 87 HOH HOH . G 4 HOH A 30 1530 90 HOH HOH . G 4 HOH A 31 1531 93 HOH HOH . G 4 HOH A 32 1532 98 HOH HOH . G 4 HOH A 33 1533 111 HOH HOH . G 4 HOH A 34 1534 112 HOH HOH . G 4 HOH A 35 1535 118 HOH HOH . G 4 HOH A 36 1536 133 HOH HOH . G 4 HOH A 37 1537 138 HOH HOH . G 4 HOH A 38 1538 139 HOH HOH . G 4 HOH A 39 1539 148 HOH HOH . G 4 HOH A 40 1540 155 HOH HOH . G 4 HOH A 41 1541 156 HOH HOH . G 4 HOH A 42 1542 158 HOH HOH . G 4 HOH A 43 1543 167 HOH HOH . G 4 HOH A 44 1544 170 HOH HOH . G 4 HOH A 45 1545 173 HOH HOH . G 4 HOH A 46 1546 176 HOH HOH . G 4 HOH A 47 1547 180 HOH HOH . G 4 HOH A 48 1548 181 HOH HOH . G 4 HOH A 49 1549 183 HOH HOH . G 4 HOH A 50 1550 187 HOH HOH . G 4 HOH A 51 1551 190 HOH HOH . G 4 HOH A 52 1552 196 HOH HOH . G 4 HOH A 53 1553 199 HOH HOH . G 4 HOH A 54 1554 207 HOH HOH . G 4 HOH A 55 1555 220 HOH HOH . G 4 HOH A 56 1556 226 HOH HOH . G 4 HOH A 57 1557 248 HOH HOH . G 4 HOH A 58 1558 250 HOH HOH . G 4 HOH A 59 1559 254 HOH HOH . G 4 HOH A 60 1560 285 HOH HOH . G 4 HOH A 61 1561 304 HOH HOH . G 4 HOH A 62 1562 312 HOH HOH . G 4 HOH A 63 1563 327 HOH HOH . G 4 HOH A 64 1564 394 HOH HOH . H 4 HOH B 1 1501 10 HOH HOH . H 4 HOH B 2 1502 12 HOH HOH . H 4 HOH B 3 1503 13 HOH HOH . H 4 HOH B 4 1504 19 HOH HOH . H 4 HOH B 5 1505 21 HOH HOH . H 4 HOH B 6 1506 39 HOH HOH . H 4 HOH B 7 1507 41 HOH HOH . H 4 HOH B 8 1508 46 HOH HOH . H 4 HOH B 9 1509 57 HOH HOH . H 4 HOH B 10 1510 74 HOH HOH . H 4 HOH B 11 1511 86 HOH HOH . H 4 HOH B 12 1512 91 HOH HOH . H 4 HOH B 13 1513 92 HOH HOH . H 4 HOH B 14 1514 100 HOH HOH . H 4 HOH B 15 1515 103 HOH HOH . H 4 HOH B 16 1516 104 HOH HOH . H 4 HOH B 17 1517 109 HOH HOH . H 4 HOH B 18 1518 113 HOH HOH . H 4 HOH B 19 1519 134 HOH HOH . H 4 HOH B 20 1520 135 HOH HOH . H 4 HOH B 21 1521 136 HOH HOH . H 4 HOH B 22 1522 142 HOH HOH . H 4 HOH B 23 1523 150 HOH HOH . H 4 HOH B 24 1524 179 HOH HOH . H 4 HOH B 25 1525 184 HOH HOH . H 4 HOH B 26 1526 186 HOH HOH . H 4 HOH B 27 1527 189 HOH HOH . H 4 HOH B 28 1528 193 HOH HOH . H 4 HOH B 29 1529 201 HOH HOH . H 4 HOH B 30 1530 215 HOH HOH . H 4 HOH B 31 1531 218 HOH HOH . H 4 HOH B 32 1532 230 HOH HOH . H 4 HOH B 33 1533 241 HOH HOH . H 4 HOH B 34 1534 242 HOH HOH . H 4 HOH B 35 1535 243 HOH HOH . H 4 HOH B 36 1536 271 HOH HOH . H 4 HOH B 37 1537 286 HOH HOH . H 4 HOH B 38 1538 289 HOH HOH . H 4 HOH B 39 1539 305 HOH HOH . H 4 HOH B 40 1540 308 HOH HOH . H 4 HOH B 41 1541 311 HOH HOH . H 4 HOH B 42 1542 342 HOH HOH . H 4 HOH B 43 1543 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K4E . . . F 3 28.583 45.482 2.014 1 40.38 ? N1 K4E 1402 B 1 HETATM 2 C C1 K4E . . . F 3 29.135 45.756 0.756 1 42.57 ? C1 K4E 1402 B 1 HETATM 3 C C2 K4E . . . F 3 28.296 45.783 -0.406 1 42.82 ? C2 K4E 1402 B 1 HETATM 4 C C3 K4E . . . F 3 29.022 45.971 -1.626 1 44.73 ? C3 K4E 1402 B 1 HETATM 5 C C4 K4E . . . F 3 30.441 46.143 -1.812 1 44.47 ? C4 K4E 1402 B 1 HETATM 6 C C5 K4E . . . F 3 31.246 46.125 -0.649 1 45.13 ? C5 K4E 1402 B 1 HETATM 7 C C6 K4E . . . F 3 30.595 45.927 0.641 1 43.15 ? C6 K4E 1402 B 1 HETATM 8 O O1 K4E . . . F 3 31.379 45.852 1.85 1 43.5 ? O1 K4E 1402 B 1 HETATM 9 C C7 K4E . . . F 3 32.832 45.883 1.82 1 41.61 ? C7 K4E 1402 B 1 HETATM 10 CL CL1 K4E . . . F 3 28.151 45.973 -3.103 1 49.18 ? CL1 K4E 1402 B 1 HETATM 11 C C8 K4E . . . F 3 27.373 44.68 2.22 1 37.79 ? C8 K4E 1402 B 1 HETATM 12 C C9 K4E . . . F 3 27.635 43.255 1.965 1 35.47 ? C9 K4E 1402 B 1 HETATM 13 O O2 K4E . . . F 3 26.709 42.447 2.011 1 36.63 ? O2 K4E 1402 B 1 HETATM 14 N N2 K4E . . . F 3 28.935 43.012 1.701 1 32.29 ? N2 K4E 1402 B 1 HETATM 15 C C10 K4E . . . F 3 29.403 41.648 1.546 1 32.88 ? C10 K4E 1402 B 1 HETATM 16 C C11 K4E . . . F 3 29.818 41.278 0.11 1 31.06 ? C11 K4E 1402 B 1 HETATM 17 C C12 K4E . . . F 3 30.606 39.961 0.026 1 30.4 ? C12 K4E 1402 B 1 HETATM 18 C C13 K4E . . . F 3 30.618 41.572 2.505 1 33.18 ? C13 K4E 1402 B 1 HETATM 19 C C14 K4E . . . F 3 31.532 40.285 2.337 1 32.41 ? C14 K4E 1402 B 1 HETATM 20 C C15 K4E . . . F 3 31.888 39.975 0.884 1 30.09 ? C15 K4E 1402 B 1 HETATM 21 N N3 K4E . . . F 3 32.567 38.664 0.778 1 26.61 ? N3 K4E 1402 B 1 HETATM 22 C C16 K4E . . . F 3 32.22 37.45 1.202 1 25.7 ? C16 K4E 1402 B 1 HETATM 23 O O3 K4E . . . F 3 31.194 37.194 1.768 1 28.95 ? O3 K4E 1402 B 1 HETATM 24 N N4 K4E . . . F 3 33.147 36.514 0.909 1 27.06 ? N4 K4E 1402 B 1 HETATM 25 C C17 K4E . . . F 3 34.141 37.168 0.27 1 26.18 ? C17 K4E 1402 B 1 HETATM 26 C C18 K4E . . . F 3 33.775 38.531 0.162 1 27.22 ? C18 K4E 1402 B 1 HETATM 27 C C19 K4E . . . F 3 34.627 39.52 -0.463 1 27.51 ? C19 K4E 1402 B 1 HETATM 28 C C20 K4E . . . F 3 35.882 39.04 -0.971 1 27.78 ? C20 K4E 1402 B 1 HETATM 29 C C21 K4E . . . F 3 36.244 37.632 -0.846 1 26.71 ? C21 K4E 1402 B 1 HETATM 30 C C22 K4E . . . F 3 35.374 36.657 -0.219 1 27.4 ? C22 K4E 1402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #