data_4K4J # _model_server_result.job_id Ocwh_Iaq4-dpWN39qnAKSg _model_server_result.datetime_utc '2024-11-16 14:50:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 4K4J # _exptl.entry_id 4K4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.387 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6Z,8E)-8-(3,4-dihydronaphthalen-1(2H)-ylidene)-3,7-dimethylocta-2,4,6-trienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K4J _cell.length_a 66.04 _cell.length_b 66.04 _cell.length_c 111.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 132.08 132.08 55.58 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 O2' _chem_comp.formula_weight 294.387 _chem_comp.id 1O8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6Z,8E)-8-(3,4-dihydronaphthalen-1(2H)-ylidene)-3,7-dimethylocta-2,4,6-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C9 1O8 sing 1 n n C10 C9 1O8 doub 2 z n C10 C11 1O8 sing 3 n n C12 C11 1O8 doub 4 e n C12 C13 1O8 sing 5 n n C9 C8 1O8 sing 6 n n C14 C13 1O8 doub 7 e n C14 C15 1O8 sing 8 n n C13 C20 1O8 sing 9 n n O1 C15 1O8 doub 10 n n C15 O2 1O8 sing 11 n n C2' C1' 1O8 sing 12 n n C2' C7 1O8 sing 13 n n C8 C7 1O8 doub 14 e n C1' C18 1O8 sing 15 n n C7 C6 1O8 sing 16 n n C18 C5 1O8 sing 17 n n C6 C5 1O8 doub 18 n y C6 C1 1O8 sing 19 n y C5 C4 1O8 sing 20 n y C1 C2 1O8 doub 21 n y C4 C3 1O8 doub 22 n y C2 C3 1O8 sing 23 n y C2' H1 1O8 sing 24 n n C2' H2 1O8 sing 25 n n C1' H3 1O8 sing 26 n n C1' H4 1O8 sing 27 n n C18 H5 1O8 sing 28 n n C18 H6 1O8 sing 29 n n C4 H7 1O8 sing 30 n n C3 H8 1O8 sing 31 n n C2 H9 1O8 sing 32 n n C1 H10 1O8 sing 33 n n C8 H11 1O8 sing 34 n n C19 H12 1O8 sing 35 n n C19 H13 1O8 sing 36 n n C19 H14 1O8 sing 37 n n C10 H15 1O8 sing 38 n n C11 H16 1O8 sing 39 n n C12 H17 1O8 sing 40 n n C20 H18 1O8 sing 41 n n C20 H19 1O8 sing 42 n n C20 H20 1O8 sing 43 n n C14 H21 1O8 sing 44 n n O2 H22 1O8 sing 45 n n # _atom_sites.entry_id 4K4J _atom_sites.fract_transf_matrix[1][1] 0.015142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1O8 A 1 500 500 1O8 UAB . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 5 HOH TIP . D 4 HOH A 6 606 6 HOH TIP . D 4 HOH A 7 607 7 HOH TIP . D 4 HOH A 8 608 8 HOH TIP . D 4 HOH A 9 609 9 HOH TIP . D 4 HOH A 10 610 10 HOH TIP . D 4 HOH A 11 611 11 HOH TIP . D 4 HOH A 12 612 12 HOH TIP . D 4 HOH A 13 613 13 HOH TIP . D 4 HOH A 14 614 14 HOH TIP . D 4 HOH A 15 615 15 HOH TIP . D 4 HOH A 16 616 16 HOH TIP . D 4 HOH A 17 617 17 HOH TIP . D 4 HOH A 18 618 18 HOH TIP . D 4 HOH A 19 619 19 HOH TIP . D 4 HOH A 20 620 20 HOH TIP . D 4 HOH A 21 621 21 HOH TIP . D 4 HOH A 22 622 22 HOH TIP . D 4 HOH A 23 623 24 HOH TIP . D 4 HOH A 24 624 25 HOH TIP . D 4 HOH A 25 625 26 HOH TIP . D 4 HOH A 26 626 27 HOH TIP . D 4 HOH A 27 627 28 HOH TIP . D 4 HOH A 28 628 29 HOH TIP . D 4 HOH A 29 629 30 HOH TIP . D 4 HOH A 30 630 31 HOH TIP . D 4 HOH A 31 631 32 HOH TIP . D 4 HOH A 32 632 33 HOH TIP . D 4 HOH A 33 633 34 HOH TIP . D 4 HOH A 34 634 35 HOH TIP . D 4 HOH A 35 635 36 HOH TIP . D 4 HOH A 36 636 37 HOH TIP . D 4 HOH A 37 637 38 HOH TIP . D 4 HOH A 38 638 39 HOH TIP . D 4 HOH A 39 639 40 HOH TIP . D 4 HOH A 40 640 41 HOH TIP . D 4 HOH A 41 641 42 HOH TIP . D 4 HOH A 42 642 43 HOH TIP . D 4 HOH A 43 643 44 HOH TIP . D 4 HOH A 44 644 45 HOH TIP . D 4 HOH A 45 645 46 HOH TIP . D 4 HOH A 46 646 47 HOH TIP . D 4 HOH A 47 647 48 HOH TIP . D 4 HOH A 48 648 49 HOH TIP . D 4 HOH A 49 649 50 HOH TIP . D 4 HOH A 50 650 51 HOH TIP . D 4 HOH A 51 651 52 HOH TIP . D 4 HOH A 52 652 53 HOH TIP . D 4 HOH A 53 653 54 HOH TIP . D 4 HOH A 54 654 55 HOH TIP . D 4 HOH A 55 655 56 HOH TIP . D 4 HOH A 56 656 57 HOH TIP . D 4 HOH A 57 657 58 HOH TIP . D 4 HOH A 58 658 59 HOH TIP . D 4 HOH A 59 659 60 HOH TIP . D 4 HOH A 60 660 61 HOH TIP . D 4 HOH A 61 661 62 HOH TIP . D 4 HOH A 62 662 63 HOH TIP . D 4 HOH A 63 663 64 HOH TIP . D 4 HOH A 64 664 65 HOH TIP . D 4 HOH A 65 665 66 HOH TIP . D 4 HOH A 66 666 67 HOH TIP . D 4 HOH A 67 667 68 HOH TIP . D 4 HOH A 68 668 69 HOH TIP . D 4 HOH A 69 669 70 HOH TIP . D 4 HOH A 70 670 71 HOH TIP . D 4 HOH A 71 671 72 HOH TIP . D 4 HOH A 72 672 73 HOH TIP . D 4 HOH A 73 673 74 HOH TIP . D 4 HOH A 74 674 75 HOH TIP . D 4 HOH A 75 675 76 HOH TIP . D 4 HOH A 76 676 77 HOH TIP . D 4 HOH A 77 677 78 HOH TIP . D 4 HOH A 78 678 79 HOH TIP . D 4 HOH A 79 679 80 HOH TIP . D 4 HOH A 80 680 81 HOH TIP . D 4 HOH A 81 681 82 HOH TIP . D 4 HOH A 82 682 83 HOH TIP . D 4 HOH A 83 683 84 HOH TIP . D 4 HOH A 84 684 85 HOH TIP . D 4 HOH A 85 685 86 HOH TIP . D 4 HOH A 86 686 87 HOH TIP . D 4 HOH A 87 687 88 HOH TIP . D 4 HOH A 88 688 89 HOH TIP . D 4 HOH A 89 689 90 HOH TIP . D 4 HOH A 90 690 91 HOH TIP . D 4 HOH A 91 691 92 HOH TIP . D 4 HOH A 92 692 93 HOH TIP . D 4 HOH A 93 693 94 HOH TIP . D 4 HOH A 94 694 95 HOH TIP . D 4 HOH A 95 695 96 HOH TIP . D 4 HOH A 96 696 97 HOH TIP . D 4 HOH A 97 697 98 HOH TIP . D 4 HOH A 98 698 99 HOH TIP . D 4 HOH A 99 699 100 HOH TIP . D 4 HOH A 100 700 101 HOH TIP . D 4 HOH A 101 701 102 HOH TIP . D 4 HOH A 102 702 103 HOH TIP . D 4 HOH A 103 703 104 HOH TIP . D 4 HOH A 104 704 105 HOH TIP . D 4 HOH A 105 705 106 HOH TIP . D 4 HOH A 106 706 107 HOH TIP . D 4 HOH A 107 707 108 HOH TIP . D 4 HOH A 108 708 109 HOH TIP . D 4 HOH A 109 709 110 HOH TIP . D 4 HOH A 110 710 111 HOH TIP . D 4 HOH A 111 711 112 HOH TIP . D 4 HOH A 112 712 113 HOH TIP . D 4 HOH A 113 713 114 HOH TIP . D 4 HOH A 114 714 115 HOH TIP . E 4 HOH B 1 701 23 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2' 1O8 . . . C 3 66.019 46.352 29.846 1 37.74 ? C2' 1O8 500 A 1 HETATM 2 C C1' 1O8 . . . C 3 67.421 46.246 30.454 1 38.04 ? C1' 1O8 500 A 1 HETATM 3 C C18 1O8 . . . C 3 67.407 45.949 31.957 1 35.84 ? C18 1O8 500 A 1 HETATM 4 C C5 1O8 . . . C 3 66.415 46.844 32.707 1 36.61 ? C5 1O8 500 A 1 HETATM 5 C C4 1O8 . . . C 3 66.584 47.002 34.079 1 35.76 ? C4 1O8 500 A 1 HETATM 6 C C3 1O8 . . . C 3 65.703 47.78 34.822 1 36.99 ? C3 1O8 500 A 1 HETATM 7 C C2 1O8 . . . C 3 64.634 48.426 34.206 1 38.19 ? C2 1O8 500 A 1 HETATM 8 C C1 1O8 . . . C 3 64.462 48.278 32.836 1 36.51 ? C1 1O8 500 A 1 HETATM 9 C C6 1O8 . . . C 3 65.344 47.494 32.099 1 36.63 ? C6 1O8 500 A 1 HETATM 10 C C7 1O8 . . . C 3 65.164 47.336 30.647 1 36.88 ? C7 1O8 500 A 1 HETATM 11 C C8 1O8 . . . C 3 64.181 48.077 30.006 1 37.61 ? C8 1O8 500 A 1 HETATM 12 C C9 1O8 . . . C 3 63.958 47.958 28.557 1 37.19 ? C9 1O8 500 A 1 HETATM 13 C C19 1O8 . . . C 3 65.084 48.297 27.58 1 38.27 ? C19 1O8 500 A 1 HETATM 14 C C10 1O8 . . . C 3 62.716 47.571 28.062 1 36.57 ? C10 1O8 500 A 1 HETATM 15 C C11 1O8 . . . C 3 61.593 47.264 28.948 1 34.12 ? C11 1O8 500 A 1 HETATM 16 C C12 1O8 . . . C 3 60.368 46.896 28.399 1 35.31 ? C12 1O8 500 A 1 HETATM 17 C C13 1O8 . . . C 3 59.211 46.594 29.25 1 35.24 ? C13 1O8 500 A 1 HETATM 18 C C20 1O8 . . . C 3 59.424 46 30.644 1 36.21 ? C20 1O8 500 A 1 HETATM 19 C C14 1O8 . . . C 3 57.933 46.838 28.759 1 37.07 ? C14 1O8 500 A 1 HETATM 20 C C15 1O8 . . . C 3 56.72 46.567 29.537 1 36.53 ? C15 1O8 500 A 1 HETATM 21 O O1 1O8 . . . C 3 55.776 47.381 29.444 1 35.64 ? O1 1O8 500 A 1 HETATM 22 O O2 1O8 . . . C 3 56.685 45.548 30.261 1 39.13 ? O2 1O8 500 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #