data_4K4P
#
_model_server_result.job_id            3BRNzmvlm6SewAp8RABQyg 
_model_server_result.datetime_utc      '2025-08-30 18:58:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    4K4P 
#
_exptl.entry_id    4K4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              909.077 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K4P 
_cell.length_a            98.505 
_cell.length_b            98.505 
_cell.length_c            96.409 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C50 H64 N6 O10' 
_chem_comp.formula_weight    909.077 
_chem_comp.id                3TL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     'TL-3, C2 symmetric inhibitor' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 O8 3TL doub 1 n n 
C31 O9 3TL sing 2 n n 
C31 N4 3TL sing 3 n n 
O9 CA 3TL sing 4 n n 
CA C 3TL sing 5 n n 
CA HA1 3TL sing 6 n n 
CA HA2 3TL sing 7 n n 
C C13 3TL doub 8 n y 
C C17 3TL sing 9 n y 
C13 C14 3TL sing 10 n y 
C13 H13 3TL sing 11 n n 
C14 C15 3TL doub 12 n y 
C14 H14 3TL sing 13 n n 
C15 C16 3TL sing 14 n y 
C15 H15 3TL sing 15 n n 
C16 C17 3TL doub 16 n y 
C16 H16 3TL sing 17 n n 
C17 H17 3TL sing 18 n n 
N4 C18 3TL sing 19 n n 
N4 HN4 3TL sing 20 n n 
C18 C19 3TL sing 21 n n 
C18 C20 3TL sing 22 n n 
C18 H18 3TL sing 23 n n 
C19 O4 3TL doub 24 n n 
C19 N2 3TL sing 25 n n 
C20 H201 3TL sing 26 n n 
C20 H202 3TL sing 27 n n 
C20 H203 3TL sing 28 n n 
N2 C10 3TL sing 29 n n 
N2 HN2 3TL sing 30 n n 
C10 C11 3TL sing 31 n n 
C10 C12 3TL sing 32 n n 
C10 H10 3TL sing 33 n n 
C11 O2 3TL doub 34 n n 
C11 N1 3TL sing 35 n n 
C12 CG2 3TL sing 36 n n 
C12 CG1 3TL sing 37 n n 
C12 H12 3TL sing 38 n n 
CG2 HG21 3TL sing 39 n n 
CG2 HG22 3TL sing 40 n n 
CG2 HG23 3TL sing 41 n n 
CG1 HG11 3TL sing 42 n n 
CG1 HG12 3TL sing 43 n n 
CG1 HG13 3TL sing 44 n n 
C2 O1 3TL sing 45 n n 
C2 C1 3TL sing 46 n n 
C2 H2 3TL sing 47 n n 
C2 C52 3TL sing 48 n n 
O1 HO1 3TL sing 49 n n 
C1 N1 3TL sing 50 n n 
C1 C3 3TL sing 51 n n 
C1 H1 3TL sing 52 n n 
N1 HN1 3TL sing 53 n n 
C3 C4 3TL sing 54 n n 
C3 H31 3TL sing 55 n n 
C3 H32 3TL sing 56 n n 
C4 C5 3TL doub 57 n y 
C4 C9 3TL sing 58 n y 
C5 C6 3TL sing 59 n y 
C5 H5 3TL sing 60 n n 
C9 C8 3TL doub 61 n y 
C9 H9 3TL sing 62 n n 
C6 C7 3TL doub 63 n y 
C6 H6 3TL sing 64 n n 
C8 C7 3TL sing 65 n y 
C8 H8 3TL sing 66 n n 
C7 H7 3TL sing 67 n n 
N51 C51 3TL sing 68 n n 
N51 HN51 3TL sing 69 n n 
N51 C61 3TL sing 70 n n 
C51 C52 3TL sing 71 n n 
C51 C53 3TL sing 72 n n 
C51 H51 3TL sing 73 n n 
C52 O51 3TL sing 74 n n 
C52 H52 3TL sing 75 n n 
O51 HO51 3TL sing 76 n n 
C53 C54 3TL sing 77 n n 
C53 H531 3TL sing 78 n n 
C53 H532 3TL sing 79 n n 
C54 C55 3TL doub 80 n y 
C54 C59 3TL sing 81 n y 
C55 C56 3TL sing 82 n y 
C55 H55 3TL sing 83 n n 
C59 C58 3TL doub 84 n y 
C59 H59 3TL sing 85 n n 
C56 C57 3TL doub 86 n y 
C56 H56 3TL sing 87 n n 
C58 C57 3TL sing 88 n y 
C58 H58 3TL sing 89 n n 
C57 H57 3TL sing 90 n n 
N52 C60 3TL sing 91 n n 
N52 HN52 3TL sing 92 n n 
N52 C69 3TL sing 93 n n 
C60 C61 3TL sing 94 n n 
C60 C62 3TL sing 95 n n 
C60 H60 3TL sing 96 n n 
C61 O52 3TL doub 97 n n 
C62 CG6 3TL sing 98 n n 
C62 CG5 3TL sing 99 n n 
C62 H62 3TL sing 100 n n 
CG6 HG61 3TL sing 101 n n 
CG6 HG62 3TL sing 102 n n 
CG6 HG63 3TL sing 103 n n 
CG5 HG51 3TL sing 104 n n 
CG5 HG52 3TL sing 105 n n 
CG5 HG53 3TL sing 106 n n 
N54 C68 3TL sing 107 n n 
N54 HN54 3TL sing 108 n n 
N54 C81 3TL sing 109 n n 
C68 C69 3TL sing 110 n n 
C68 C70 3TL sing 111 n n 
C68 H68 3TL sing 112 n n 
C69 O54 3TL doub 113 n n 
C70 H701 3TL sing 114 n n 
C70 H702 3TL sing 115 n n 
C70 H703 3TL sing 116 n n 
C81 O58 3TL doub 117 n n 
C81 O59 3TL sing 118 n n 
O59 CA5 3TL sing 119 n n 
CA5 C50 3TL sing 120 n n 
CA5 HA51 3TL sing 121 n n 
CA5 HA52 3TL sing 122 n n 
C50 C63 3TL doub 123 n y 
C50 C67 3TL sing 124 n y 
C63 C64 3TL sing 125 n y 
C63 H63 3TL sing 126 n n 
C64 C65 3TL doub 127 n y 
C64 H64 3TL sing 128 n n 
C65 C66 3TL sing 129 n y 
C65 H65 3TL sing 130 n n 
C66 C67 3TL doub 131 n y 
C66 H66 3TL sing 132 n n 
C67 H67 3TL sing 133 n n 
#
_atom_sites.entry_id                     4K4P 
_atom_sites.fract_transf_matrix[1][1]    0.010152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NO3 A 1 101 101 NO3 NO3 . 
D 3 3TL B 1 101 102 3TL 3TL . 
E 4 HOH A 1 201 201 HOH HOH . 
E 4 HOH A 2 202 202 HOH HOH . 
E 4 HOH A 3 203 203 HOH HOH . 
E 4 HOH A 4 204 204 HOH HOH . 
E 4 HOH A 5 205 206 HOH HOH . 
E 4 HOH A 6 206 207 HOH HOH . 
E 4 HOH A 7 207 208 HOH HOH . 
E 4 HOH A 8 208 209 HOH HOH . 
F 4 HOH B 1 201 205 HOH HOH . 
F 4 HOH B 2 202 101 HOH HOH . 
F 4 HOH B 3 203 102 HOH HOH . 
F 4 HOH B 4 204 103 HOH HOH . 
F 4 HOH B 5 205 104 HOH HOH . 
F 4 HOH B 6 206 105 HOH HOH . 
F 4 HOH B 7 207 106 HOH HOH . 
F 4 HOH B 8 208 107 HOH HOH . 
F 4 HOH B 9 209 108 HOH HOH . 
F 4 HOH B 10 210 109 HOH HOH . 
F 4 HOH B 11 211 110 HOH HOH . 
F 4 HOH B 12 212 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C31 3TL . . . D 3 -21.72 2.852 -15.456 1 113.52 ? C31 3TL 101 B 1 
HETATM 2 O O8 3TL . . . D 3 -21.378 4.017 -15.195 1 114.28 ? O8 3TL 101 B 1 
HETATM 3 O O9 3TL . . . D 3 -22.225 2.106 -14.28 1 104.98 ? O9 3TL 101 B 1 
HETATM 4 C CA 3TL . . . D 3 -21.538 2.073 -13.019 1 126.07 ? CA 3TL 101 B 1 
HETATM 5 C C 3TL . . . D 3 -21.553 3.248 -12.011 1 149.57 ? C 3TL 101 B 1 
HETATM 6 C C13 3TL . . . D 3 -22.517 3.313 -10.979 1 152.93 ? C13 3TL 101 B 1 
HETATM 7 C C14 3TL . . . D 3 -22.492 4.36 -10.04 1 148.83 ? C14 3TL 101 B 1 
HETATM 8 C C15 3TL . . . D 3 -21.495 5.343 -10.098 1 151.02 ? C15 3TL 101 B 1 
HETATM 9 C C16 3TL . . . D 3 -20.514 5.286 -11.096 1 144.42 ? C16 3TL 101 B 1 
HETATM 10 C C17 3TL . . . D 3 -20.54 4.242 -12.033 1 149.39 ? C17 3TL 101 B 1 
HETATM 11 N N4 3TL . . . D 3 -21.579 2.366 -16.749 1 89.82 ? N4 3TL 101 B 1 
HETATM 12 C C18 3TL . . . D 3 -21.558 0.982 -17.277 1 69.34 ? C18 3TL 101 B 1 
HETATM 13 C C19 3TL . . . D 3 -20.641 1.019 -18.458 1 66.13 ? C19 3TL 101 B 1 
HETATM 14 O O4 3TL . . . D 3 -20.502 2.022 -19.179 1 68.53 ? O4 3TL 101 B 1 
HETATM 15 C C20 3TL . . . D 3 -22.827 0.19 -17.66 1 66.46 ? C20 3TL 101 B 1 
HETATM 16 N N2 3TL . . . D 3 -19.893 -0.081 -18.567 1 68.55 ? N2 3TL 101 B 1 
HETATM 17 C C10 3TL . . . D 3 -18.817 -0.185 -19.542 1 65.89 ? C10 3TL 101 B 1 
HETATM 18 C C11 3TL . . . D 3 -18.744 -1.603 -20.034 1 64.67 ? C11 3TL 101 B 1 
HETATM 19 O O2 3TL . . . D 3 -18.506 -2.57 -19.311 1 64.12 ? O2 3TL 101 B 1 
HETATM 20 C C12 3TL . . . D 3 -17.449 0.447 -19.16 1 65.65 ? C12 3TL 101 B 1 
HETATM 21 C CG2 3TL . . . D 3 -17.447 1.229 -17.842 1 61.61 ? CG2 3TL 101 B 1 
HETATM 22 C CG1 3TL . . . D 3 -16.227 -0.45 -19.235 1 63.15 ? CG1 3TL 101 B 1 
HETATM 23 C C2 3TL . . . D 3 -18.467 -2.672 -23.407 1 69.36 ? C2 3TL 101 B 1 
HETATM 24 O O1 3TL . . . D 3 -18.852 -1.484 -24.097 1 80.63 ? O1 3TL 101 B 1 
HETATM 25 C C1 3TL . . . D 3 -19.281 -2.772 -22.157 1 69.5 ? C1 3TL 101 B 1 
HETATM 26 N N1 3TL . . . D 3 -19.023 -1.625 -21.334 1 70.18 ? N1 3TL 101 B 1 
HETATM 27 C C3 3TL . . . D 3 -20.718 -2.733 -22.649 1 70.8 ? C3 3TL 101 B 1 
HETATM 28 C C4 3TL . . . D 3 -21.649 -3.004 -21.503 1 74.14 ? C4 3TL 101 B 1 
HETATM 29 C C5 3TL . . . D 3 -21.672 -4.27 -20.946 1 73.86 ? C5 3TL 101 B 1 
HETATM 30 C C9 3TL . . . D 3 -22.463 -1.986 -21.028 1 81.31 ? C9 3TL 101 B 1 
HETATM 31 C C6 3TL . . . D 3 -22.527 -4.55 -19.889 1 90.67 ? C6 3TL 101 B 1 
HETATM 32 C C8 3TL . . . D 3 -23.309 -2.26 -19.959 1 93.25 ? C8 3TL 101 B 1 
HETATM 33 C C7 3TL . . . D 3 -23.334 -3.531 -19.384 1 96.8 ? C7 3TL 101 B 1 
HETATM 34 N N51 3TL . . . D 3 -16.209 -4.804 -23.633 1 54.33 ? N51 3TL 101 B 1 
HETATM 35 C C51 3TL . . . D 3 -16.171 -3.633 -22.773 1 58.23 ? C51 3TL 101 B 1 
HETATM 36 C C52 3TL . . . D 3 -17.012 -2.443 -23.241 1 60.89 ? C52 3TL 101 B 1 
HETATM 37 O O51 3TL . . . D 3 -16.75 -2.084 -24.594 1 67.84 ? O51 3TL 101 B 1 
HETATM 38 C C53 3TL . . . D 3 -14.729 -3.181 -22.764 1 60.54 ? C53 3TL 101 B 1 
HETATM 39 C C54 3TL . . . D 3 -13.825 -4.237 -22.171 1 58.64 ? C54 3TL 101 B 1 
HETATM 40 C C55 3TL . . . D 3 -12.938 -4.947 -22.998 1 60.52 ? C55 3TL 101 B 1 
HETATM 41 C C59 3TL . . . D 3 -13.854 -4.466 -20.792 1 59.78 ? C59 3TL 101 B 1 
HETATM 42 C C56 3TL . . . D 3 -12.12 -5.938 -22.441 1 64.32 ? C56 3TL 101 B 1 
HETATM 43 C C58 3TL . . . D 3 -13.018 -5.433 -20.234 1 64.56 ? C58 3TL 101 B 1 
HETATM 44 C C57 3TL . . . D 3 -12.16 -6.172 -21.06 1 64.69 ? C57 3TL 101 B 1 
HETATM 45 N N52 3TL . . . D 3 -15.583 -8.017 -24.126 1 52.33 ? N52 3TL 101 B 1 
HETATM 46 C C60 3TL . . . D 3 -16.65 -7.075 -24.273 1 54.2 ? C60 3TL 101 B 1 
HETATM 47 C C61 3TL . . . D 3 -16.646 -5.997 -23.216 1 54.11 ? C61 3TL 101 B 1 
HETATM 48 O O52 3TL . . . D 3 -17.047 -6.161 -22.073 1 56.35 ? O52 3TL 101 B 1 
HETATM 49 C C62 3TL . . . D 3 -17.935 -7.882 -24.347 1 57.12 ? C62 3TL 101 B 1 
HETATM 50 C CG6 3TL . . . D 3 -19.165 -6.977 -24.338 1 57.58 ? CG6 3TL 101 B 1 
HETATM 51 C CG5 3TL . . . D 3 -17.909 -8.724 -25.637 1 58.21 ? CG5 3TL 101 B 1 
HETATM 52 N N54 3TL . . . D 3 -13.698 -10.444 -25.746 1 77.07 ? N54 3TL 101 B 1 
HETATM 53 C C68 3TL . . . D 3 -13.755 -9.393 -24.73 1 66.46 ? C68 3TL 101 B 1 
HETATM 54 C C69 3TL . . . D 3 -14.751 -8.309 -25.117 1 57.2 ? C69 3TL 101 B 1 
HETATM 55 O O54 3TL . . . D 3 -14.848 -7.757 -26.228 1 53.86 ? O54 3TL 101 B 1 
HETATM 56 C C70 3TL . . . D 3 -12.335 -8.943 -24.388 1 66.11 ? C70 3TL 101 B 1 
HETATM 57 C C81 3TL . . . D 3 -13.939 -11.711 -25.407 1 87.49 ? C81 3TL 101 B 1 
HETATM 58 O O58 3TL . . . D 3 -14.173 -12.034 -24.236 1 86.08 ? O58 3TL 101 B 1 
HETATM 59 O O59 3TL . . . D 3 -13.902 -12.736 -26.461 1 101.25 ? O59 3TL 101 B 1 
HETATM 60 C CA5 3TL . . . D 3 -13.671 -14.141 -26.174 1 117.59 ? CA5 3TL 101 B 1 
HETATM 61 C C50 3TL . . . D 3 -12.613 -14.514 -25.109 1 113.49 ? C50 3TL 101 B 1 
HETATM 62 C C63 3TL . . . D 3 -12.577 -15.846 -24.673 1 107.94 ? C63 3TL 101 B 1 
HETATM 63 C C64 3TL . . . D 3 -11.644 -16.255 -23.716 1 111.61 ? C64 3TL 101 B 1 
HETATM 64 C C65 3TL . . . D 3 -10.734 -15.337 -23.178 1 109.51 ? C65 3TL 101 B 1 
HETATM 65 C C66 3TL . . . D 3 -10.754 -14.006 -23.597 1 113.05 ? C66 3TL 101 B 1 
HETATM 66 C C67 3TL . . . D 3 -11.684 -13.601 -24.558 1 116.22 ? C67 3TL 101 B 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           195 
_model_server_stats.create_model_time_ms    97 
_model_server_stats.query_time_ms           1039 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           66 
#