data_4K4R # _model_server_result.job_id v7rcByDNrtINQVusto2jNQ _model_server_result.datetime_utc '2024-10-11 04:21:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":106}' # _entry.id 4K4R # _exptl.entry_id 4K4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 909.077 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K4R _cell.length_a 98.488 _cell.length_b 98.488 _cell.length_c 96.571 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C50 H64 N6 O10' _chem_comp.formula_weight 909.077 _chem_comp.id 3TL _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TL-3, C2 symmetric inhibitor' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O8 3TL doub 23 n n C31 O9 3TL sing 24 n n C31 N4 3TL sing 25 n n O9 CA 3TL sing 26 n n CA C 3TL sing 27 n n CA HA1 3TL sing 28 n n CA HA2 3TL sing 29 n n C C13 3TL doub 30 n y C C17 3TL sing 31 n y C13 C14 3TL sing 32 n y C13 H13 3TL sing 33 n n C14 C15 3TL doub 34 n y C14 H14 3TL sing 35 n n C15 C16 3TL sing 36 n y C15 H15 3TL sing 37 n n C16 C17 3TL doub 38 n y C16 H16 3TL sing 39 n n C17 H17 3TL sing 40 n n N4 C18 3TL sing 41 n n N4 HN4 3TL sing 42 n n C18 C19 3TL sing 43 n n C18 C20 3TL sing 44 n n C18 H18 3TL sing 45 n n C19 O4 3TL doub 46 n n C19 N2 3TL sing 47 n n C20 H201 3TL sing 48 n n C20 H202 3TL sing 49 n n C20 H203 3TL sing 50 n n N2 C10 3TL sing 51 n n N2 HN2 3TL sing 52 n n C10 C11 3TL sing 53 n n C10 C12 3TL sing 54 n n C10 H10 3TL sing 55 n n C11 O2 3TL doub 56 n n C11 N1 3TL sing 57 n n C12 CG2 3TL sing 58 n n C12 CG1 3TL sing 59 n n C12 H12 3TL sing 60 n n CG2 HG21 3TL sing 61 n n CG2 HG22 3TL sing 62 n n CG2 HG23 3TL sing 63 n n CG1 HG11 3TL sing 64 n n CG1 HG12 3TL sing 65 n n CG1 HG13 3TL sing 66 n n C2 O1 3TL sing 67 n n C2 C1 3TL sing 68 n n C2 H2 3TL sing 69 n n C2 C52 3TL sing 70 n n O1 HO1 3TL sing 71 n n C1 N1 3TL sing 72 n n C1 C3 3TL sing 73 n n C1 H1 3TL sing 74 n n N1 HN1 3TL sing 75 n n C3 C4 3TL sing 76 n n C3 H31 3TL sing 77 n n C3 H32 3TL sing 78 n n C4 C5 3TL doub 79 n y C4 C9 3TL sing 80 n y C5 C6 3TL sing 81 n y C5 H5 3TL sing 82 n n C9 C8 3TL doub 83 n y C9 H9 3TL sing 84 n n C6 C7 3TL doub 85 n y C6 H6 3TL sing 86 n n C8 C7 3TL sing 87 n y C8 H8 3TL sing 88 n n C7 H7 3TL sing 89 n n N51 C51 3TL sing 90 n n N51 HN51 3TL sing 91 n n N51 C61 3TL sing 92 n n C51 C52 3TL sing 93 n n C51 C53 3TL sing 94 n n C51 H51 3TL sing 95 n n C52 O51 3TL sing 96 n n C52 H52 3TL sing 97 n n O51 HO51 3TL sing 98 n n C53 C54 3TL sing 99 n n C53 H531 3TL sing 100 n n C53 H532 3TL sing 101 n n C54 C55 3TL doub 102 n y C54 C59 3TL sing 103 n y C55 C56 3TL sing 104 n y C55 H55 3TL sing 105 n n C59 C58 3TL doub 106 n y C59 H59 3TL sing 107 n n C56 C57 3TL doub 108 n y C56 H56 3TL sing 109 n n C58 C57 3TL sing 110 n y C58 H58 3TL sing 111 n n C57 H57 3TL sing 112 n n N52 C60 3TL sing 113 n n N52 HN52 3TL sing 114 n n N52 C69 3TL sing 115 n n C60 C61 3TL sing 116 n n C60 C62 3TL sing 117 n n C60 H60 3TL sing 118 n n C61 O52 3TL doub 119 n n C62 CG6 3TL sing 120 n n C62 CG5 3TL sing 121 n n C62 H62 3TL sing 122 n n CG6 HG61 3TL sing 123 n n CG6 HG62 3TL sing 124 n n CG6 HG63 3TL sing 125 n n CG5 HG51 3TL sing 126 n n CG5 HG52 3TL sing 127 n n CG5 HG53 3TL sing 128 n n N54 C68 3TL sing 129 n n N54 HN54 3TL sing 130 n n N54 C81 3TL sing 131 n n C68 C69 3TL sing 132 n n C68 C70 3TL sing 133 n n C68 H68 3TL sing 134 n n C69 O54 3TL doub 135 n n C70 H701 3TL sing 136 n n C70 H702 3TL sing 137 n n C70 H703 3TL sing 138 n n C81 O58 3TL doub 139 n n C81 O59 3TL sing 140 n n O59 CA5 3TL sing 141 n n CA5 C50 3TL sing 142 n n CA5 HA51 3TL sing 143 n n CA5 HA52 3TL sing 144 n n C50 C63 3TL doub 145 n y C50 C67 3TL sing 146 n y C63 C64 3TL sing 147 n y C63 H63 3TL sing 148 n n C64 C65 3TL doub 149 n y C64 H64 3TL sing 150 n n C65 C66 3TL sing 151 n y C65 H65 3TL sing 152 n n C66 C67 3TL doub 153 n y C66 H66 3TL sing 154 n n C67 H67 3TL sing 155 n n # _atom_sites.entry_id 4K4R _atom_sites.fract_transf_matrix[1][1] 0.010154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 101 101 DMS DMS . D 3 27B A 1 102 102 27B 27B . E 4 NO3 A 1 103 103 NO3 NO3 . F 4 NO3 A 1 104 104 NO3 NO3 . G 4 NO3 A 1 105 105 NO3 NO3 . H 5 3TL A 1 106 106 3TL 3TL . I 4 NO3 B 1 101 101 NO3 NO3 . J 3 27B B 1 102 102 27B 27B . K 4 NO3 B 1 103 104 NO3 NO3 . L 6 BR B 1 104 105 BR BR . M 7 HOH A 1 201 201 HOH HOH . M 7 HOH A 2 202 202 HOH HOH . M 7 HOH A 3 203 203 HOH HOH . M 7 HOH A 4 204 204 HOH HOH . M 7 HOH A 5 205 205 HOH HOH . M 7 HOH A 6 206 206 HOH HOH . M 7 HOH A 7 207 207 HOH HOH . M 7 HOH A 8 208 208 HOH HOH . M 7 HOH A 9 209 209 HOH HOH . M 7 HOH A 10 210 210 HOH HOH . M 7 HOH A 11 211 211 HOH HOH . M 7 HOH A 12 212 212 HOH HOH . M 7 HOH A 13 213 213 HOH HOH . M 7 HOH A 14 214 214 HOH HOH . M 7 HOH A 15 215 215 HOH HOH . M 7 HOH A 16 216 216 HOH HOH . M 7 HOH A 17 217 217 HOH HOH . M 7 HOH A 18 218 218 HOH HOH . M 7 HOH A 19 219 219 HOH HOH . M 7 HOH A 20 220 220 HOH HOH . M 7 HOH A 21 221 221 HOH HOH . M 7 HOH A 22 222 222 HOH HOH . M 7 HOH A 23 223 223 HOH HOH . M 7 HOH A 24 224 224 HOH HOH . M 7 HOH A 25 225 225 HOH HOH . M 7 HOH A 26 226 226 HOH HOH . M 7 HOH A 27 227 227 HOH HOH . M 7 HOH A 28 228 228 HOH HOH . M 7 HOH A 29 229 229 HOH HOH . M 7 HOH A 30 230 230 HOH HOH . M 7 HOH A 31 231 231 HOH HOH . M 7 HOH A 32 232 232 HOH HOH . M 7 HOH A 33 233 233 HOH HOH . M 7 HOH A 34 234 234 HOH HOH . M 7 HOH A 35 235 235 HOH HOH . M 7 HOH A 36 236 236 HOH HOH . M 7 HOH A 37 237 237 HOH HOH . M 7 HOH A 38 238 238 HOH HOH . N 7 HOH B 1 201 201 HOH HOH . N 7 HOH B 2 202 202 HOH HOH . N 7 HOH B 3 203 203 HOH HOH . N 7 HOH B 4 204 204 HOH HOH . N 7 HOH B 5 205 205 HOH HOH . N 7 HOH B 6 206 206 HOH HOH . N 7 HOH B 7 207 207 HOH HOH . N 7 HOH B 8 208 208 HOH HOH . N 7 HOH B 9 209 209 HOH HOH . N 7 HOH B 10 210 210 HOH HOH . N 7 HOH B 11 211 211 HOH HOH . N 7 HOH B 12 212 212 HOH HOH . N 7 HOH B 13 213 213 HOH HOH . N 7 HOH B 14 214 214 HOH HOH . N 7 HOH B 15 215 215 HOH HOH . N 7 HOH B 16 216 216 HOH HOH . N 7 HOH B 17 217 217 HOH HOH . N 7 HOH B 18 218 218 HOH HOH . N 7 HOH B 19 219 219 HOH HOH . N 7 HOH B 20 220 220 HOH HOH . N 7 HOH B 21 221 221 HOH HOH . N 7 HOH B 22 222 222 HOH HOH . N 7 HOH B 23 223 223 HOH HOH . N 7 HOH B 24 224 224 HOH HOH . N 7 HOH B 25 225 225 HOH HOH . N 7 HOH B 26 226 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 3TL . . . H 5 -0.08 -23.307 17.649 1 62.72 ? C31 3TL 106 A 1 HETATM 2 O O8 3TL . . . H 5 0.379 -24.136 18.418 1 58.83 ? O8 3TL 106 A 1 HETATM 3 O O9 3TL . . . H 5 -1.355 -23.581 16.971 1 70.13 ? O9 3TL 106 A 1 HETATM 4 C CA 3TL . . . H 5 -1.553 -24.685 16.094 1 90 ? CA 3TL 106 A 1 HETATM 5 C C 3TL . . . H 5 -2.953 -24.763 15.479 1 103.74 ? C 3TL 106 A 1 HETATM 6 C C13 3TL . . . H 5 -3.152 -24.761 14.107 1 109.54 ? C13 3TL 106 A 1 HETATM 7 C C14 3TL . . . H 5 -4.436 -24.861 13.577 1 109 ? C14 3TL 106 A 1 HETATM 8 C C15 3TL . . . H 5 -5.56 -24.944 14.385 1 114.17 ? C15 3TL 106 A 1 HETATM 9 C C16 3TL . . . H 5 -5.381 -24.942 15.758 1 119.77 ? C16 3TL 106 A 1 HETATM 10 C C17 3TL . . . H 5 -4.083 -24.853 16.284 1 118.91 ? C17 3TL 106 A 1 HETATM 11 N N4 3TL . . . H 5 0.51 -22.118 17.415 1 51.23 ? N4 3TL 106 A 1 HETATM 12 C C18 3TL . . . H 5 1.707 -21.648 18.078 1 44.37 ? C18 3TL 106 A 1 HETATM 13 C C19 3TL . . . H 5 1.527 -20.568 19.121 1 42.82 ? C19 3TL 106 A 1 HETATM 14 O O4 3TL . . . H 5 2.414 -20.331 19.957 1 38.08 ? O4 3TL 106 A 1 HETATM 15 C C20 3TL . . . H 5 3.06 -21.918 17.407 1 48.56 ? C20 3TL 106 A 1 HETATM 16 N N2 3TL . . . H 5 0.36 -19.9 19.003 1 35.76 ? N2 3TL 106 A 1 HETATM 17 C C10 3TL . . . H 5 0.043 -18.754 19.86 1 35.62 ? C10 3TL 106 A 1 HETATM 18 C C11 3TL . . . H 5 -1.373 -18.718 20.418 1 36.5 ? C11 3TL 106 A 1 HETATM 19 O O2 3TL . . . H 5 -2.313 -18.588 19.651 1 33.3 ? O2 3TL 106 A 1 HETATM 20 C C12 3TL . . . H 5 0.508 -17.494 19.159 1 41.92 ? C12 3TL 106 A 1 HETATM 21 C CG2 3TL . . . H 5 1.606 -17.621 18.118 1 39.37 ? CG2 3TL 106 A 1 HETATM 22 C CG1 3TL . . . H 5 -0.053 -16.111 19.476 1 39.28 ? CG1 3TL 106 A 1 HETATM 23 C C2 3TL . . . H 5 -2.411 -17.72 23.786 1 41.86 ? C2 3TL 106 A 1 HETATM 24 O O1 3TL . . . H 5 -1.253 -17.624 24.652 1 42.24 ? O1 3TL 106 A 1 HETATM 25 C C1 3TL . . . H 5 -2.437 -18.867 22.777 1 42.74 ? C1 3TL 106 A 1 HETATM 26 N N1 3TL . . . H 5 -1.353 -18.835 21.765 1 40.53 ? N1 3TL 106 A 1 HETATM 27 C C3 3TL . . . H 5 -2.285 -20.189 23.474 1 43.48 ? C3 3TL 106 A 1 HETATM 28 C C4 3TL . . . H 5 -2.372 -21.308 22.401 1 41.79 ? C4 3TL 106 A 1 HETATM 29 C C5 3TL . . . H 5 -3.563 -21.539 21.705 1 39.79 ? C5 3TL 106 A 1 HETATM 30 C C9 3TL . . . H 5 -1.252 -22.112 22.093 1 42.34 ? C9 3TL 106 A 1 HETATM 31 C C6 3TL . . . H 5 -3.654 -22.534 20.741 1 43.71 ? C6 3TL 106 A 1 HETATM 32 C C8 3TL . . . H 5 -1.326 -23.124 21.128 1 44.96 ? C8 3TL 106 A 1 HETATM 33 C C7 3TL . . . H 5 -2.54 -23.326 20.439 1 45.25 ? C7 3TL 106 A 1 HETATM 34 N N51 3TL . . . H 5 -4.858 -16.118 23.543 1 30.75 ? N51 3TL 106 A 1 HETATM 35 C C51 3TL . . . H 5 -3.787 -15.887 22.574 1 33.34 ? C51 3TL 106 A 1 HETATM 36 C C52 3TL . . . H 5 -2.482 -16.371 23.15 1 38.69 ? C52 3TL 106 A 1 HETATM 37 O O51 3TL . . . H 5 -2.163 -15.42 24.149 1 47.76 ? O51 3TL 106 A 1 HETATM 38 C C53 3TL . . . H 5 -3.602 -14.387 22.234 1 34.8 ? C53 3TL 106 A 1 HETATM 39 C C54 3TL . . . H 5 -4.715 -13.789 21.432 1 44.13 ? C54 3TL 106 A 1 HETATM 40 C C55 3TL . . . H 5 -5.84 -13.274 22.098 1 48.71 ? C55 3TL 106 A 1 HETATM 41 C C59 3TL . . . H 5 -4.638 -13.737 20.056 1 45.2 ? C59 3TL 106 A 1 HETATM 42 C C56 3TL . . . H 5 -6.904 -12.763 21.384 1 49.7 ? C56 3TL 106 A 1 HETATM 43 C C58 3TL . . . H 5 -5.703 -13.206 19.322 1 48.38 ? C58 3TL 106 A 1 HETATM 44 C C57 3TL . . . H 5 -6.832 -12.736 19.989 1 51.08 ? C57 3TL 106 A 1 HETATM 45 N N52 3TL . . . H 5 -7.887 -15.807 24.239 1 26.09 ? N52 3TL 106 A 1 HETATM 46 C C60 3TL . . . H 5 -6.888 -16.853 24.455 1 26.23 ? C60 3TL 106 A 1 HETATM 47 C C61 3TL . . . H 5 -5.947 -16.824 23.303 1 27.77 ? C61 3TL 106 A 1 HETATM 48 O O52 3TL . . . H 5 -6.147 -17.389 22.262 1 32.16 ? O52 3TL 106 A 1 HETATM 49 C C62 3TL . . . H 5 -7.558 -18.195 24.624 1 29.52 ? C62 3TL 106 A 1 HETATM 50 C CG6 3TL . . . H 5 -6.506 -19.299 24.764 1 33.65 ? CG6 3TL 106 A 1 HETATM 51 C CG5 3TL . . . H 5 -8.553 -18.154 25.805 1 29.46 ? CG5 3TL 106 A 1 HETATM 52 N N54 3TL . . . H 5 -10.309 -13.828 25.768 1 29.74 ? N54 3TL 106 A 1 HETATM 53 C C68 3TL . . . H 5 -9.253 -13.883 24.786 1 29.35 ? C68 3TL 106 A 1 HETATM 54 C C69 3TL . . . H 5 -8.259 -14.966 25.16 1 26.98 ? C69 3TL 106 A 1 HETATM 55 O O54 3TL . . . H 5 -7.823 -14.949 26.297 1 28.26 ? O54 3TL 106 A 1 HETATM 56 C C70 3TL . . . H 5 -8.569 -12.5 24.87 1 30.6 ? C70 3TL 106 A 1 HETATM 57 C C81 3TL . . . H 5 -11.554 -14.197 25.498 1 31.88 ? C81 3TL 106 A 1 HETATM 58 O O58 3TL . . . H 5 -11.951 -14.68 24.451 1 32.06 ? O58 3TL 106 A 1 HETATM 59 O O59 3TL . . . H 5 -12.498 -13.942 26.537 1 34.36 ? O59 3TL 106 A 1 HETATM 60 C CA5 3TL . . . H 5 -13.9 -14.215 26.218 1 43.55 ? CA5 3TL 106 A 1 HETATM 61 C C50 3TL . . . H 5 -14.592 -12.982 25.651 1 42.62 ? C50 3TL 106 A 1 HETATM 62 C C63 3TL . . . H 5 -15.205 -13.014 24.376 1 44.37 ? C63 3TL 106 A 1 HETATM 63 C C64 3TL . . . H 5 -15.82 -11.858 23.891 1 45.6 ? C64 3TL 106 A 1 HETATM 64 C C65 3TL . . . H 5 -15.816 -10.681 24.649 1 52.96 ? C65 3TL 106 A 1 HETATM 65 C C66 3TL . . . H 5 -15.196 -10.644 25.906 1 57.46 ? C66 3TL 106 A 1 HETATM 66 C C67 3TL . . . H 5 -14.587 -11.803 26.407 1 50.42 ? C67 3TL 106 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #