data_4K5Y # _model_server_result.job_id hJeAQmg1Z1kJ7IuCnT9a-g _model_server_result.datetime_utc '2024-11-14 13:14:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 4K5Y # _exptl.entry_id 4K5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.476 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K5Y _cell.length_a 86.559 _cell.length_b 123.968 _cell.length_c 166.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,T 1 1 B,I,J,K,L,M,N,O,P,Q,U 2 1 C,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 188 1_555 A SG CYS 313 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 B SG CYS 86 B CYS 188 1_555 B SG CYS 313 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf3 C SG CYS 86 C CYS 188 1_555 C SG CYS 313 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C21 H30 N2 O' _chem_comp.formula_weight 326.476 _chem_comp.id 1Q5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C6 1Q5 sing 38 n n C18 C13 1Q5 sing 39 n n C5 C6 1Q5 doub 40 n y C5 C4 1Q5 sing 41 n y C7 C4 1Q5 sing 42 n n C6 C1 1Q5 sing 43 n y C4 C3 1Q5 doub 44 n y C13 N12 1Q5 doub 45 n y C13 C14 1Q5 sing 46 n y C22 C21 1Q5 sing 47 n n N12 C11 1Q5 sing 48 n y C14 C15 1Q5 doub 49 n y C1 O10 1Q5 sing 50 n n C1 C2 1Q5 doub 51 n y C21 C20 1Q5 sing 52 n n C3 C2 1Q5 sing 53 n y C11 O10 1Q5 sing 54 n n C11 C16 1Q5 doub 55 n y C20 N19 1Q5 sing 56 n n C20 C23 1Q5 sing 57 n n C15 C16 1Q5 sing 58 n y C15 N19 1Q5 sing 59 n n C2 C9 1Q5 sing 60 n n C16 C17 1Q5 sing 61 n n C23 C24 1Q5 sing 62 n n C18 H1 1Q5 sing 63 n n C18 H2 1Q5 sing 64 n n C18 H3 1Q5 sing 65 n n C20 H4 1Q5 sing 66 n n C17 H5 1Q5 sing 67 n n C17 H6 1Q5 sing 68 n n C17 H7 1Q5 sing 69 n n C14 H8 1Q5 sing 70 n n C7 H9 1Q5 sing 71 n n C7 H10 1Q5 sing 72 n n C7 H11 1Q5 sing 73 n n C8 H12 1Q5 sing 74 n n C8 H13 1Q5 sing 75 n n C8 H14 1Q5 sing 76 n n C9 H15 1Q5 sing 77 n n C9 H16 1Q5 sing 78 n n C9 H17 1Q5 sing 79 n n C5 H18 1Q5 sing 80 n n C3 H19 1Q5 sing 81 n n C24 H20 1Q5 sing 82 n n C24 H21 1Q5 sing 83 n n C24 H22 1Q5 sing 84 n n C23 H23 1Q5 sing 85 n n C23 H24 1Q5 sing 86 n n C21 H25 1Q5 sing 87 n n C21 H26 1Q5 sing 88 n n C22 H27 1Q5 sing 89 n n C22 H28 1Q5 sing 90 n n C22 H29 1Q5 sing 91 n n N19 H30 1Q5 sing 92 n n # _atom_sites.entry_id 4K5Y _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1Q5 A 1 401 401 1Q5 1Q5 . E 3 OLA A 1 501 501 OLA OLA . F 4 OLC A 1 502 502 OLC OLC . G 4 OLC A 1 503 503 OLC OLC . H 5 SO4 A 1 504 504 SO4 SO4 . I 2 1Q5 B 1 401 401 1Q5 1Q5 . J 4 OLC B 1 501 501 OLC OLC . K 6 PGW B 1 502 502 PGW PGW . L 6 PGW B 1 503 503 PGW PGW . M 6 PGW B 1 504 504 PGW PGW . N 7 1PE B 1 505 505 1PE 1PE . O 5 SO4 B 1 506 506 SO4 SO4 . P 5 SO4 B 1 507 507 SO4 SO4 . Q 5 SO4 B 1 508 508 SO4 SO4 . R 2 1Q5 C 1 401 401 1Q5 1Q5 . S 3 OLA C 1 501 501 OLA OLA . T 8 HOH A 1 601 601 HOH HOH . T 8 HOH A 2 602 602 HOH HOH . T 8 HOH A 3 603 603 HOH HOH . T 8 HOH A 4 604 604 HOH HOH . U 8 HOH B 1 601 601 HOH HOH . U 8 HOH B 2 602 602 HOH HOH . U 8 HOH B 3 603 603 HOH HOH . U 8 HOH B 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 1Q5 . . . I 2 -46.066 9.824 9.484 1 38.75 ? C18 1Q5 401 B 1 HETATM 2 C C20 1Q5 . . . I 2 -42.262 13.124 8.615 1 44.65 ? C20 1Q5 401 B 1 HETATM 3 C C1 1Q5 . . . I 2 -49.149 12.295 6.506 1 52.82 ? C1 1Q5 401 B 1 HETATM 4 C C17 1Q5 . . . I 2 -45.645 14.733 6.489 1 51.11 ? C17 1Q5 401 B 1 HETATM 5 C C16 1Q5 . . . I 2 -45.737 13.458 7.274 1 44.1 ? C16 1Q5 401 B 1 HETATM 6 C C15 1Q5 . . . I 2 -44.622 13.008 8.107 1 40.03 ? C15 1Q5 401 B 1 HETATM 7 C C14 1Q5 . . . I 2 -44.776 11.826 8.803 1 37.66 ? C14 1Q5 401 B 1 HETATM 8 C C13 1Q5 . . . I 2 -45.946 11.098 8.711 1 41.81 ? C13 1Q5 401 B 1 HETATM 9 C C11 1Q5 . . . I 2 -46.936 12.616 7.244 1 48.69 ? C11 1Q5 401 B 1 HETATM 10 C C6 1Q5 . . . I 2 -49.329 11.059 5.723 1 51.54 ? C6 1Q5 401 B 1 HETATM 11 C C7 1Q5 . . . I 2 -52.893 10.161 6.621 1 49.24 ? C7 1Q5 401 B 1 HETATM 12 C C8 1Q5 . . . I 2 -48.204 10.538 4.88 1 48.95 ? C8 1Q5 401 B 1 HETATM 13 C C9 1Q5 . . . I 2 -50.134 14.015 8.118 1 39.08 ? C9 1Q5 401 B 1 HETATM 14 C C5 1Q5 . . . I 2 -50.543 10.399 5.782 1 52.8 ? C5 1Q5 401 B 1 HETATM 15 C C4 1Q5 . . . I 2 -51.583 10.893 6.569 1 54.66 ? C4 1Q5 401 B 1 HETATM 16 C C3 1Q5 . . . I 2 -51.458 12.05 7.319 1 50.84 ? C3 1Q5 401 B 1 HETATM 17 C C2 1Q5 . . . I 2 -50.279 12.767 7.313 1 49.47 ? C2 1Q5 401 B 1 HETATM 18 C C24 1Q5 . . . I 2 -42.539 14.64 10.561 1 35.65 ? C24 1Q5 401 B 1 HETATM 19 C C23 1Q5 . . . I 2 -41.557 14.048 9.582 1 40.2 ? C23 1Q5 401 B 1 HETATM 20 C C21 1Q5 . . . I 2 -41.335 12.859 7.448 1 42.5 ? C21 1Q5 401 B 1 HETATM 21 C C22 1Q5 . . . I 2 -42.133 12.54 6.212 1 45.38 ? C22 1Q5 401 B 1 HETATM 22 N N19 1Q5 . . . I 2 -43.494 13.738 8.18 1 47.68 ? N19 1Q5 401 B 1 HETATM 23 N N12 1Q5 . . . I 2 -46.98 11.492 7.954 1 48.13 ? N12 1Q5 401 B 1 HETATM 24 O O10 1Q5 . . . I 2 -47.987 12.992 6.49 1 53.28 ? O10 1Q5 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #